Wall clock time and date at job start Sat Apr 11 2020 05:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.47144 * 2 1 4 4 C 1.52996 * 109.46824 * 239.99856 * 2 1 3 5 5 C 1.52998 * 109.46929 * 175.00282 * 4 2 1 6 6 N 1.46506 * 109.47237 * 179.97438 * 5 4 2 7 7 C 1.36939 * 120.00073 * 179.72302 * 6 5 4 8 8 H 1.08004 * 119.99859 * 0.02562 * 7 6 5 9 9 C 1.38805 * 119.99849 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00455 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00168 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47227 * 89.99498 * 11 9 7 13 13 H 1.48496 * 109.47434 * 209.99930 * 11 9 7 14 14 H 1.48507 * 109.46769 * 330.00032 * 11 9 7 15 15 N 1.46501 * 109.46695 * 119.99908 * 2 1 3 16 16 C 1.34778 * 120.00048 * 274.99345 * 15 2 1 17 17 O 1.21278 * 120.00067 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99603 * 180.02562 * 16 15 2 19 19 H 1.09000 * 110.85818 * 62.34442 * 18 16 15 20 20 C 1.54622 * 110.97179 * 298.54817 * 18 16 15 21 21 C 1.51286 * 104.19516 * 266.67798 * 20 18 16 22 22 O 1.21284 * 124.93955 * 163.71166 * 21 20 18 23 23 N 1.34415 * 110.11827 * 343.75250 * 21 20 18 24 24 C 1.46496 * 124.34941 * 179.56721 * 23 21 20 25 25 C 1.54267 * 110.03156 * 57.14189 * 24 23 21 26 26 C 1.54893 * 104.19798 * 217.10428 * 25 24 23 27 27 C 1.54890 * 102.74536 * 37.94047 * 26 25 24 28 28 C 1.53870 * 110.03534 * 299.97496 * 24 23 21 29 29 C 1.46765 * 111.29878 * 359.58807 * 23 21 20 30 30 H 1.08995 * 109.46978 * 60.00077 * 1 2 3 31 31 H 1.08998 * 109.46949 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46582 * 300.00255 * 1 2 3 33 33 H 1.09000 * 109.47441 * 55.00371 * 4 2 1 34 34 H 1.09002 * 109.47087 * 294.99817 * 4 2 1 35 35 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 36 36 H 1.08998 * 109.47454 * 300.00107 * 5 4 2 37 37 H 0.97005 * 119.99811 * 0.02562 * 6 5 4 38 38 H 0.97000 * 120.00679 * 179.97438 * 10 9 7 39 39 H 0.97003 * 120.00004 * 94.99973 * 15 2 1 40 40 H 1.08994 * 110.48983 * 25.36396 * 20 18 16 41 41 H 1.09004 * 110.48339 * 148.00675 * 20 18 16 42 42 H 1.09003 * 110.01885 * 178.58079 * 24 23 21 43 43 H 1.09002 * 110.48783 * 335.78537 * 25 24 23 44 44 H 1.08998 * 110.48719 * 98.42753 * 25 24 23 45 45 H 1.09007 * 110.75328 * 279.63191 * 26 25 24 46 46 H 1.08992 * 110.75692 * 156.25807 * 26 25 24 47 47 H 1.09005 * 110.48622 * 203.38188 * 27 26 25 48 48 H 1.09001 * 110.48667 * 80.73942 * 27 26 25 49 49 H 1.08996 * 110.03583 * 238.56742 * 28 24 23 50 50 H 1.09001 * 110.03438 * 359.97438 * 28 24 23 51 51 H 1.08996 * 110.24393 * 258.01691 * 29 23 21 52 52 H 1.09004 * 110.24058 * 136.01899 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 7 4.0532 -1.3046 -2.5095 7 6 5.3948 -1.3362 -2.7821 8 1 6.0929 -0.8520 -2.1153 9 6 5.8574 -1.9906 -3.9155 10 7 5.0067 -2.5812 -4.7279 11 14 7.6876 -2.0345 -4.2870 12 1 8.2932 -3.2321 -3.6513 13 1 7.8931 -2.0967 -5.7564 14 1 8.3314 -0.8093 -3.7486 15 7 2.0183 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3572 17 8 1.8584 1.1584 2.4117 18 6 2.6499 -0.7286 3.5875 19 1 3.6655 -1.0944 3.4366 20 6 1.7002 -1.8812 3.9879 21 6 0.7598 -1.2547 4.9938 22 8 -0.2999 -1.7297 5.3436 23 7 1.2692 -0.0947 5.4428 24 6 0.6097 0.7742 6.4206 25 6 0.3262 -0.0103 7.7182 26 6 -1.0457 0.5277 8.1955 27 6 -1.8195 0.7166 6.8671 28 6 -0.7546 1.2364 5.8794 29 6 2.5708 0.1898 4.8271 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.6054 -0.2618 -2.1370 34 1 1.7516 -1.7715 -1.2055 35 1 3.9995 -1.0729 -0.4260 36 1 3.8533 0.4368 -1.3573 37 1 3.4258 -1.7360 -3.1105 38 1 5.3300 -3.0382 -5.5201 39 1 2.2490 -1.6318 1.1527 40 1 1.1470 -2.2389 3.1196 41 1 2.2612 -2.6959 4.4460 42 1 1.2382 1.6384 6.6356 43 1 0.2662 -1.0790 7.5125 44 1 1.0957 0.1932 8.4629 45 1 -0.9283 1.4800 8.7129 46 1 -1.5456 -0.2009 8.8336 47 1 -2.6159 1.4505 6.9906 48 1 -2.2261 -0.2348 6.5239 49 1 -0.7885 2.3248 5.8327 50 1 -0.9259 0.8146 4.8891 51 1 3.3764 -0.0452 5.5227 52 1 2.6248 1.2360 4.5257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268420250.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:10:16 Heat of formation + Delta-G solvation = -75.562709 kcal Electronic energy + Delta-G solvation = -30017.738055 eV Core-core repulsion = 26016.529292 eV Total energy + Delta-G solvation = -4001.208763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.31367 -39.63104 -37.65134 -36.86892 -36.02210 -34.40746 -32.79369 -31.66774 -30.53033 -28.97225 -27.99571 -27.88009 -27.71667 -24.33388 -23.60771 -21.85628 -21.58497 -20.94485 -20.71880 -20.28342 -18.98147 -17.83481 -17.19273 -17.06265 -16.37036 -16.11807 -15.68465 -15.16930 -14.90074 -14.67729 -14.61060 -14.07793 -14.01670 -13.86477 -13.66993 -13.50591 -13.41623 -13.34096 -12.95652 -12.84581 -12.33181 -12.13716 -11.98490 -11.88073 -11.81376 -11.73549 -11.34833 -11.33695 -11.24255 -11.16356 -11.05717 -10.82818 -10.77871 -10.68605 -10.59577 -10.07976 -9.88889 -9.83748 -9.73334 -9.08382 -8.90539 -8.89289 -6.96132 -5.79970 -3.09047 2.36455 2.50054 2.71265 3.05858 3.40843 3.46147 3.47996 3.96205 4.00165 4.32880 4.34717 4.41562 4.53452 4.56680 4.67245 4.89785 5.00261 5.03200 5.10251 5.17508 5.20130 5.25382 5.27431 5.29399 5.32051 5.39688 5.44276 5.48659 5.51985 5.56945 5.63211 5.69081 5.72561 5.74829 5.88751 5.90299 5.95747 5.99340 6.14463 6.19710 6.24675 6.29819 6.43989 6.48176 6.76364 6.81927 6.90085 7.45348 7.66390 7.97037 8.13791 8.38883 9.49942 10.07570 10.41990 11.42811 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023451 B = 0.002100 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.678433 B =13327.607237 C =13788.054437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.715 5.715 16 C 0.522 3.478 17 O -0.536 6.536 18 C -0.128 4.128 19 H 0.128 0.872 20 C -0.149 4.149 21 C 0.518 3.482 22 O -0.525 6.525 23 N -0.610 5.610 24 C 0.156 3.844 25 C -0.135 4.135 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.130 4.130 29 C 0.115 3.885 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.402 0.598 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.079 0.921 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.367 5.205 25.070 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.107 0.893 4 C -0.174 4.174 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.366 5.366 16 C 0.307 3.693 17 O -0.413 6.413 18 C -0.149 4.149 19 H 0.146 0.854 20 C -0.189 4.189 21 C 0.305 3.695 22 O -0.401 6.401 23 N -0.343 5.343 24 C 0.054 3.946 25 C -0.173 4.173 26 C -0.158 4.158 27 C -0.158 4.158 28 C -0.168 4.168 29 C -0.009 4.009 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.237 0.763 40 H 0.124 0.876 41 H 0.134 0.866 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.098 0.902 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.984 5.898 25.322 28.225 hybrid contribution 1.136 -0.673 -0.682 1.486 sum -9.848 5.226 24.640 27.045 Atomic orbital electron populations 1.22158 0.95415 1.02069 1.02279 1.20995 0.93551 0.97669 0.83656 0.89312 1.22070 0.98077 1.00833 0.96373 1.20625 0.90317 0.95577 0.90756 1.42376 1.05422 1.64915 1.25129 1.19217 0.83858 1.28452 1.05591 0.91246 1.24755 0.97752 1.00880 0.97677 1.69657 1.32819 1.40498 1.15220 0.86183 0.85057 0.77662 0.77250 1.21701 1.21738 1.20764 1.46089 1.66663 1.14292 1.09556 1.20124 0.77633 0.87205 0.84321 1.90695 1.49942 1.15833 1.84825 1.22340 1.02344 0.96469 0.93781 0.85374 1.22413 0.97797 0.98134 1.00573 1.20700 0.86052 0.80931 0.81768 1.90715 1.22386 1.65891 1.61118 1.48392 1.20798 1.22158 1.42987 1.21653 0.93813 0.92002 0.87167 1.22740 0.97428 1.01421 0.95715 1.22408 0.95378 1.00670 0.97307 1.22300 0.97301 1.01529 0.94651 1.22457 0.93842 1.00526 1.00018 1.22041 0.84986 1.01570 0.92273 0.91477 0.92486 0.92547 0.90213 0.91314 0.96413 0.96475 0.78308 0.93490 0.76273 0.87574 0.86643 0.89028 0.90215 0.91531 0.91564 0.91465 0.91947 0.90892 0.91344 0.91169 0.90249 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.48 37.16 0.35 -1.51 16 2 C 0.15 1.86 2.57 -67.93 -0.17 1.68 16 3 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 4 C -0.14 -1.99 4.87 -26.73 -0.13 -2.12 16 5 C 0.15 2.96 6.15 -4.04 -0.02 2.94 16 6 N -0.73 -18.18 5.60 -59.91 -0.34 -18.52 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 11 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 N -0.71 -7.98 4.26 -53.81 -0.23 -8.21 16 16 C 0.52 6.01 7.12 -10.98 -0.08 5.93 16 17 O -0.54 -7.97 15.17 5.56 0.08 -7.89 16 18 C -0.13 -1.01 3.54 -90.14 -0.32 -1.33 16 19 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 20 C -0.15 -1.18 6.39 -26.74 -0.17 -1.35 16 21 C 0.52 5.73 6.85 -10.86 -0.07 5.65 16 22 O -0.52 -7.47 15.94 5.55 0.09 -7.38 16 23 N -0.61 -5.78 2.83 -163.58 -0.46 -6.24 16 24 C 0.16 1.38 3.55 -66.82 -0.24 1.14 16 25 C -0.13 -1.12 6.28 -25.07 -0.16 -1.28 16 26 C -0.12 -0.91 6.91 -24.74 -0.17 -1.08 16 27 C -0.12 -1.08 6.83 -25.07 -0.17 -1.26 16 28 C -0.13 -1.27 6.03 -25.62 -0.15 -1.42 16 29 C 0.11 0.90 6.69 -3.12 -0.02 0.88 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.02 0.33 7.75 -51.93 -0.40 -0.07 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 9.96 7.67 -40.82 -0.31 9.64 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.40 3.83 8.42 -40.82 -0.34 3.49 16 40 H 0.11 0.86 7.51 -51.93 -0.39 0.47 16 41 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 43 H 0.08 0.84 6.42 -51.93 -0.33 0.50 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.87 7.39 -51.93 -0.38 0.49 16 51 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.10 0.90 6.94 -51.93 -0.36 0.54 16 LS Contribution 412.47 15.07 6.22 6.22 Total: -1.00 -34.27 412.47 -9.94 -44.21 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -9.23 Total: 8.32 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.78 Total: -0.44 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.30 Total: -60.18 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.17 Total: -15.27 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.27 -9.94 -44.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268420250.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.349 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds