Wall clock time and date at job start Sat Apr 11 2020 05:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 109.47144 * 2 1 4 4 C 1.52996 * 109.46824 * 239.99856 * 2 1 3 5 5 C 1.52998 * 109.46929 * 175.00282 * 4 2 1 6 6 N 1.46506 * 109.47237 * 179.97438 * 5 4 2 7 7 C 1.36939 * 120.00073 * 179.72302 * 6 5 4 8 8 H 1.08004 * 119.99859 * 0.02562 * 7 6 5 9 9 C 1.38805 * 119.99849 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00455 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00168 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47227 * 89.99498 * 11 9 7 13 13 H 1.48496 * 109.47434 * 209.99930 * 11 9 7 14 14 H 1.48507 * 109.46769 * 330.00032 * 11 9 7 15 15 N 1.46501 * 109.46695 * 119.99908 * 2 1 3 16 16 C 1.34778 * 120.00048 * 274.99345 * 15 2 1 17 17 O 1.21278 * 120.00067 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99603 * 180.02562 * 16 15 2 19 19 H 1.09000 * 110.85818 * 62.34442 * 18 16 15 20 20 C 1.54622 * 110.97179 * 298.54817 * 18 16 15 21 21 C 1.51286 * 104.19516 * 266.67798 * 20 18 16 22 22 O 1.21284 * 124.93955 * 163.71166 * 21 20 18 23 23 N 1.34415 * 110.11827 * 343.75250 * 21 20 18 24 24 C 1.46496 * 124.34941 * 179.56721 * 23 21 20 25 25 C 1.54267 * 110.03156 * 57.14189 * 24 23 21 26 26 C 1.54893 * 104.19798 * 217.10428 * 25 24 23 27 27 C 1.54890 * 102.74536 * 37.94047 * 26 25 24 28 28 C 1.53870 * 110.03534 * 299.97496 * 24 23 21 29 29 C 1.46765 * 111.29878 * 359.58807 * 23 21 20 30 30 H 1.08995 * 109.46978 * 60.00077 * 1 2 3 31 31 H 1.08998 * 109.46949 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46582 * 300.00255 * 1 2 3 33 33 H 1.09000 * 109.47441 * 55.00371 * 4 2 1 34 34 H 1.09002 * 109.47087 * 294.99817 * 4 2 1 35 35 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 36 36 H 1.08998 * 109.47454 * 300.00107 * 5 4 2 37 37 H 0.97005 * 119.99811 * 0.02562 * 6 5 4 38 38 H 0.97000 * 120.00679 * 179.97438 * 10 9 7 39 39 H 0.97003 * 120.00004 * 94.99973 * 15 2 1 40 40 H 1.08994 * 110.48983 * 25.36396 * 20 18 16 41 41 H 1.09004 * 110.48339 * 148.00675 * 20 18 16 42 42 H 1.09003 * 110.01885 * 178.58079 * 24 23 21 43 43 H 1.09002 * 110.48783 * 335.78537 * 25 24 23 44 44 H 1.08998 * 110.48719 * 98.42753 * 25 24 23 45 45 H 1.09007 * 110.75328 * 279.63191 * 26 25 24 46 46 H 1.08992 * 110.75692 * 156.25807 * 26 25 24 47 47 H 1.09005 * 110.48622 * 203.38188 * 27 26 25 48 48 H 1.09001 * 110.48667 * 80.73942 * 27 26 25 49 49 H 1.08996 * 110.03583 * 238.56742 * 28 24 23 50 50 H 1.09001 * 110.03438 * 359.97438 * 28 24 23 51 51 H 1.08996 * 110.24393 * 258.01691 * 29 23 21 52 52 H 1.09004 * 110.24058 * 136.01899 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 7 4.0532 -1.3046 -2.5095 7 6 5.3948 -1.3362 -2.7821 8 1 6.0929 -0.8520 -2.1153 9 6 5.8574 -1.9906 -3.9155 10 7 5.0067 -2.5812 -4.7279 11 14 7.6876 -2.0345 -4.2870 12 1 8.2932 -3.2321 -3.6513 13 1 7.8931 -2.0967 -5.7564 14 1 8.3314 -0.8093 -3.7486 15 7 2.0183 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3572 17 8 1.8584 1.1584 2.4117 18 6 2.6499 -0.7286 3.5875 19 1 3.6655 -1.0944 3.4366 20 6 1.7002 -1.8812 3.9879 21 6 0.7598 -1.2547 4.9938 22 8 -0.2999 -1.7297 5.3436 23 7 1.2692 -0.0947 5.4428 24 6 0.6097 0.7742 6.4206 25 6 0.3262 -0.0103 7.7182 26 6 -1.0457 0.5277 8.1955 27 6 -1.8195 0.7166 6.8671 28 6 -0.7546 1.2364 5.8794 29 6 2.5708 0.1898 4.8271 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.6054 -0.2618 -2.1370 34 1 1.7516 -1.7715 -1.2055 35 1 3.9995 -1.0729 -0.4260 36 1 3.8533 0.4368 -1.3573 37 1 3.4258 -1.7360 -3.1105 38 1 5.3300 -3.0382 -5.5201 39 1 2.2490 -1.6318 1.1527 40 1 1.1470 -2.2389 3.1196 41 1 2.2612 -2.6959 4.4460 42 1 1.2382 1.6384 6.6356 43 1 0.2662 -1.0790 7.5125 44 1 1.0957 0.1932 8.4629 45 1 -0.9283 1.4800 8.7129 46 1 -1.5456 -0.2009 8.8336 47 1 -2.6159 1.4505 6.9906 48 1 -2.2261 -0.2348 6.5239 49 1 -0.7885 2.3248 5.8327 50 1 -0.9259 0.8146 4.8891 51 1 3.3764 -0.0452 5.5227 52 1 2.6248 1.2360 4.5257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268420250.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:10:15 Heat of formation + Delta-G solvation = -97.939137 kcal Electronic energy + Delta-G solvation = -30018.708370 eV Core-core repulsion = 26016.529292 eV Total energy + Delta-G solvation = -4002.179078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.09203 -40.55430 -38.40490 -37.99773 -36.99465 -36.07033 -33.82881 -33.12405 -31.76554 -29.67979 -29.43757 -28.65858 -28.41684 -25.92471 -24.69995 -23.16250 -22.53231 -21.84648 -21.63471 -21.17443 -19.75763 -19.22157 -18.51993 -17.90414 -17.36316 -16.90378 -16.71501 -16.47935 -15.96433 -15.70600 -15.50332 -15.42815 -15.18944 -15.09521 -14.82044 -14.61765 -14.38310 -14.23109 -14.09550 -13.85752 -13.34331 -13.10316 -12.90665 -12.89681 -12.87120 -12.59940 -12.53625 -12.43331 -12.34574 -12.25525 -12.07552 -11.98059 -11.97807 -11.92698 -11.84321 -11.64291 -11.51354 -10.93959 -10.82394 -10.66387 -10.07478 -9.64139 -8.99426 -7.94875 -5.23816 1.48620 1.49990 1.56129 1.58490 1.61388 2.02075 2.19449 2.56418 3.28621 3.33438 3.38977 3.59189 3.64544 3.67305 3.73652 3.86754 3.99415 4.06596 4.16142 4.36593 4.38024 4.41576 4.46400 4.50640 4.54715 4.55099 4.62602 4.65411 4.69440 4.75442 4.77747 4.81246 4.83566 4.87618 4.89283 4.98506 4.98583 5.06036 5.18281 5.21144 5.23300 5.26895 5.33613 5.43598 5.50018 5.57457 5.72904 6.17276 6.27527 6.56382 7.18131 7.24886 7.34062 8.09997 8.32896 9.28392 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023451 B = 0.002100 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.678433 B =13327.607237 C =13788.054437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.071 0.929 4 C -0.119 4.119 5 C 0.155 3.845 6 N -0.747 5.747 7 C -0.245 4.245 8 H 0.074 0.926 9 C -0.076 4.076 10 N -0.968 5.968 11 Si 0.973 3.027 12 H -0.284 1.284 13 H -0.297 1.297 14 H -0.271 1.271 15 N -0.712 5.712 16 C 0.517 3.483 17 O -0.574 6.574 18 C -0.117 4.117 19 H 0.163 0.837 20 C -0.141 4.141 21 C 0.504 3.496 22 O -0.568 6.568 23 N -0.609 5.609 24 C 0.149 3.851 25 C -0.129 4.129 26 C -0.115 4.115 27 C -0.120 4.120 28 C -0.129 4.129 29 C 0.113 3.887 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.007 0.993 37 H 0.375 0.625 38 H 0.251 0.749 39 H 0.413 0.587 40 H 0.104 0.896 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.044 0.956 49 H 0.078 0.922 50 H 0.035 0.965 51 H 0.114 0.886 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.842 5.314 26.792 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.050 3.950 3 H 0.089 0.911 4 C -0.157 4.157 5 C 0.029 3.971 6 N -0.390 5.390 7 C -0.377 4.377 8 H 0.092 0.908 9 C -0.269 4.269 10 N -0.619 5.619 11 Si 0.802 3.198 12 H -0.211 1.211 13 H -0.223 1.223 14 H -0.196 1.196 15 N -0.363 5.363 16 C 0.304 3.696 17 O -0.453 6.453 18 C -0.138 4.138 19 H 0.180 0.820 20 C -0.181 4.181 21 C 0.293 3.707 22 O -0.447 6.447 23 N -0.342 5.342 24 C 0.046 3.954 25 C -0.168 4.168 26 C -0.153 4.153 27 C -0.158 4.158 28 C -0.168 4.168 29 C -0.009 4.009 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.048 0.952 36 H 0.025 0.975 37 H 0.206 0.794 38 H 0.060 0.940 39 H 0.249 0.751 40 H 0.122 0.878 41 H 0.163 0.837 42 H 0.130 0.870 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.063 0.937 49 H 0.097 0.903 50 H 0.054 0.946 51 H 0.132 0.868 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.437 6.025 27.082 29.305 hybrid contribution 0.607 -0.630 -1.188 1.476 sum -8.830 5.395 25.893 27.884 Atomic orbital electron populations 1.22073 0.94354 1.02659 1.02037 1.20752 0.94213 0.96540 0.83535 0.91114 1.21889 0.94913 1.01654 0.97265 1.20763 0.93155 0.94212 0.88991 1.42594 1.04531 1.65256 1.26586 1.19608 0.85312 1.27393 1.05370 0.90778 1.25574 1.01997 1.01350 0.97937 1.69807 1.34610 1.41806 1.15681 0.85149 0.80143 0.78022 0.76496 1.21108 1.22328 1.19597 1.46056 1.66411 1.14742 1.09133 1.20801 0.76762 0.86902 0.85184 1.90683 1.51517 1.17669 1.85474 1.22394 1.03722 0.95962 0.91767 0.81967 1.22439 0.97266 0.98642 0.99732 1.21285 0.85942 0.81361 0.82110 1.90690 1.24249 1.67095 1.62692 1.48530 1.21325 1.21666 1.42665 1.21829 0.93514 0.92755 0.87261 1.22686 0.98422 0.99726 0.95926 1.22419 0.94682 1.01739 0.96429 1.22266 0.97682 1.00365 0.95447 1.22444 0.95061 1.00923 0.98359 1.22214 0.85002 1.00862 0.92849 0.90710 0.91447 0.93796 0.90524 0.90375 0.95198 0.97501 0.79359 0.93997 0.75059 0.87787 0.83674 0.86970 0.92713 0.89431 0.89454 0.91337 0.90755 0.93668 0.90308 0.94632 0.86818 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.48 71.98 0.68 -2.76 16 2 C 0.15 3.83 2.57 44.99 0.12 3.95 16 3 H 0.07 2.04 7.58 -2.39 -0.02 2.03 16 4 C -0.12 -3.38 4.87 30.59 0.15 -3.23 16 5 C 0.16 5.78 6.15 86.38 0.53 6.32 16 6 N -0.75 -36.70 5.60 -343.44 -1.92 -38.63 16 7 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 10 N -0.97 -58.27 13.06 21.65 0.28 -57.98 16 11 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 N -0.71 -14.91 4.26 -442.54 -1.88 -16.80 16 16 C 0.52 11.27 7.12 87.66 0.62 11.89 16 17 O -0.57 -16.98 15.17 -3.02 -0.05 -17.02 16 18 C -0.12 -1.55 3.54 -10.48 -0.04 -1.59 16 19 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 20 C -0.14 -1.95 6.39 30.59 0.20 -1.76 16 21 C 0.50 10.95 6.85 87.90 0.60 11.56 16 22 O -0.57 -16.75 15.94 -3.04 -0.05 -16.80 16 23 N -0.61 -10.94 2.83 -790.02 -2.23 -13.18 16 24 C 0.15 2.48 3.55 45.72 0.16 2.64 16 25 C -0.13 -2.00 6.28 31.67 0.20 -1.80 16 26 C -0.11 -1.63 6.91 31.89 0.22 -1.41 16 27 C -0.12 -2.21 6.83 31.67 0.22 -1.99 16 28 C -0.13 -2.57 6.03 31.32 0.19 -2.38 16 29 C 0.11 1.52 6.69 86.83 0.58 2.10 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.03 1.06 7.75 -2.39 -0.02 1.04 16 36 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.37 19.50 7.67 -92.70 -0.71 18.79 16 38 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.41 6.97 8.42 -92.71 -0.78 6.19 16 40 H 0.10 1.52 7.51 -2.39 -0.02 1.50 16 41 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.11 1.39 8.09 -2.39 -0.02 1.37 16 43 H 0.05 1.15 6.42 -2.39 -0.02 1.13 16 44 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 49 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.03 0.94 7.39 -2.39 -0.02 0.92 16 51 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.09 1.43 6.94 -2.38 -0.02 1.42 16 Total: -1.00 -75.99 412.47 1.33 -74.66 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -0.58 Total: 33.37 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 5.74 Total: 5.12 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -5.76 Total: -126.58 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.09 Total: -33.83 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -75.99 1.33 -74.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268420250.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.284 kcal (2) G-P(sol) polarization free energy of solvation -75.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds