Wall clock time and date at job start Sat Apr 11 2020 05:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.53005 * 109.46982 * 120.00322 * 2 1 3 5 5 N 1.46900 * 109.46927 * 174.99932 * 4 2 1 6 6 C 1.46895 * 111.00057 * 66.04539 * 5 4 2 7 7 C 1.46896 * 110.99599 * 189.99671 * 5 4 2 8 8 C 1.50708 * 109.46922 * 170.00220 * 7 5 4 9 9 O 1.21289 * 119.99853 * 359.97438 * 8 7 5 10 10 N 1.34772 * 119.99805 * 180.02562 * 8 7 5 11 11 C 1.37102 * 119.99993 * 180.02562 * 10 8 7 12 12 H 1.07996 * 119.99424 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00086 * 180.02562 * 11 10 8 14 14 N 1.31414 * 119.99936 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 120.00121 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46867 * 90.00357 * 15 13 11 17 17 H 1.48500 * 109.46897 * 210.00261 * 15 13 11 18 18 H 1.48503 * 109.46872 * 330.00273 * 15 13 11 19 19 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 20 20 C 1.34771 * 119.99635 * 85.00546 * 19 2 1 21 21 O 1.21284 * 120.00644 * 359.97438 * 20 19 2 22 22 C 1.50706 * 119.99767 * 180.02562 * 20 19 2 23 23 C 1.55926 * 115.92008 * 297.93185 * 22 20 19 24 24 C 1.58466 * 103.90819 * 199.43257 * 23 22 20 25 25 C 1.55930 * 103.90564 * 359.97438 * 24 23 22 26 26 C 1.55920 * 104.50047 * 289.45427 * 25 24 23 27 27 C 1.54584 * 104.64440 * 71.08515 * 26 25 24 28 28 C 1.56949 * 101.40945 * 33.75383 * 25 24 23 29 29 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 31 31 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 32 32 H 1.09000 * 109.46692 * 294.99866 * 4 2 1 33 33 H 1.08993 * 109.47016 * 54.99791 * 4 2 1 34 34 H 1.09008 * 109.47354 * 59.99412 * 6 5 4 35 35 H 1.09005 * 109.47377 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47102 * 300.00037 * 6 5 4 37 37 H 1.09007 * 109.47297 * 289.99900 * 7 5 4 38 38 H 1.08996 * 109.47274 * 49.99931 * 7 5 4 39 39 H 0.97004 * 120.00221 * 359.97438 * 10 8 7 40 40 H 0.96998 * 119.99898 * 180.02562 * 14 13 11 41 41 H 0.97000 * 119.99818 * 265.00273 * 19 2 1 42 42 H 1.09000 * 110.40608 * 318.76793 * 23 22 20 43 43 H 1.09008 * 110.39932 * 81.17945 * 23 22 20 44 44 H 1.09009 * 110.98664 * 241.34634 * 24 23 22 45 45 H 1.08998 * 110.62900 * 118.48762 * 24 23 22 46 46 H 1.08996 * 115.92195 * 160.57274 * 25 24 23 47 47 H 1.08999 * 110.40652 * 312.29389 * 26 25 24 48 48 H 1.09002 * 110.50239 * 189.92476 * 26 25 24 49 49 H 1.08995 * 110.40340 * 241.21240 * 27 26 25 50 50 H 1.08995 * 110.50347 * 118.84110 * 27 26 25 51 51 H 1.08997 * 112.02938 * 189.50072 * 28 25 24 52 52 H 1.09001 * 112.02859 * 62.97213 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5040 -0.8268 1.1904 6 6 4.1310 0.4991 1.2720 7 6 4.0106 -1.7145 2.2454 8 6 5.4724 -1.9938 2.0079 9 8 6.0364 -1.5022 1.0532 10 7 6.1526 -2.7908 2.8555 11 6 7.4825 -3.0445 2.6397 12 1 7.9849 -2.6061 1.7902 13 6 8.1837 -3.8666 3.5134 14 7 9.4586 -4.1094 3.3068 15 14 7.3145 -4.6256 4.9824 16 1 6.7450 -5.9413 4.5951 17 1 8.2860 -4.8133 6.0897 18 1 6.2214 -3.7255 5.4301 19 7 2.0184 -0.6907 -1.1962 20 6 2.1471 -0.0183 -2.3571 21 8 1.8584 1.1584 -2.4117 22 6 2.6489 -0.7289 -3.5877 23 6 4.0936 -1.3088 -3.4985 24 6 4.5184 -1.5074 -5.0122 25 6 3.2745 -1.0220 -5.8174 26 6 2.1939 -2.1172 -5.5643 27 6 1.7795 -1.9235 -4.0877 28 6 2.7396 0.1314 -4.8970 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -0.1584 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 3.8524 0.9757 2.2120 35 1 5.2148 0.3920 1.2266 36 1 3.7911 1.1137 0.4384 37 1 3.8857 -1.2338 3.2158 38 1 3.4544 -2.6517 2.2299 39 1 5.7014 -3.1843 3.6188 40 1 9.9479 -4.6836 3.9164 41 1 2.2490 -1.6318 -1.1526 42 1 4.7548 -0.6056 -2.9922 43 1 4.0869 -2.2670 -2.9788 44 1 4.7231 -2.5566 -5.2258 45 1 5.3883 -0.8953 -5.2503 46 1 3.4539 -0.7618 -6.8605 47 1 2.6175 -3.1105 -5.7128 48 1 1.3376 -1.9679 -6.2220 49 1 1.9994 -2.8215 -3.5104 50 1 0.7199 -1.6777 -4.0177 51 1 1.7622 0.4909 -5.2185 52 1 3.4585 0.9452 -4.8020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268734829.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:10:30 Heat of formation + Delta-G solvation = -64.285103 kcal Electronic energy + Delta-G solvation = -30642.090127 eV Core-core repulsion = 26641.370398 eV Total energy + Delta-G solvation = -4000.719729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76050 -39.16913 -38.49443 -36.94938 -34.72262 -33.83194 -31.69910 -31.48189 -30.39729 -29.32853 -28.20460 -27.75284 -26.97068 -24.79570 -23.18266 -22.34393 -22.03690 -20.43113 -19.67460 -19.36125 -19.07314 -18.25591 -17.14659 -16.31426 -16.16844 -15.55682 -15.28155 -15.10645 -15.09444 -14.87325 -14.57052 -14.16012 -14.08200 -13.53752 -13.27294 -12.97997 -12.88157 -12.65953 -12.63174 -12.42801 -12.28386 -12.11825 -12.01003 -11.86318 -11.78947 -11.49564 -11.40081 -11.35226 -11.13155 -11.07199 -11.03723 -10.96478 -10.77034 -10.61909 -10.48387 -10.07005 -9.99557 -9.62450 -9.55474 -8.96959 -8.58973 -8.19748 -7.99697 -6.32789 -3.84172 2.70438 3.00155 3.04429 3.13056 3.22842 3.72056 3.87090 4.08305 4.20004 4.32503 4.40196 4.69531 4.75530 4.89753 4.97996 5.00808 5.06915 5.16344 5.18076 5.22066 5.26861 5.29670 5.36647 5.39463 5.43031 5.53748 5.56662 5.58571 5.62690 5.68629 5.77463 5.82581 5.84258 5.86191 5.90536 5.94927 5.95369 6.00041 6.04908 6.06826 6.11638 6.20749 6.25787 6.51130 6.58240 7.12043 7.25380 7.56818 7.65457 8.13070 8.35609 8.58638 8.93857 9.40909 9.82097 10.80372 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.002962 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.243804 B = 9451.789206 C =10884.173629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.087 0.913 4 C 0.043 3.957 5 N -0.513 5.513 6 C 0.021 3.979 7 C 0.042 3.958 8 C 0.453 3.547 9 O -0.557 6.557 10 N -0.592 5.592 11 C -0.304 4.304 12 H 0.119 0.881 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.270 1.270 19 N -0.702 5.702 20 C 0.548 3.452 21 O -0.549 6.549 22 C -0.103 4.103 23 C -0.104 4.104 24 C -0.118 4.118 25 C -0.108 4.108 26 C -0.118 4.118 27 C -0.107 4.107 28 C -0.093 4.093 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.014 0.986 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.404 0.596 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.071 0.929 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.296 3.376 -10.408 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.105 0.895 4 C -0.086 4.086 5 N -0.237 5.237 6 C -0.127 4.127 7 C -0.090 4.090 8 C 0.238 3.762 9 O -0.438 6.438 10 N -0.231 5.231 11 C -0.432 4.432 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.706 3.294 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.196 1.196 19 N -0.352 5.352 20 C 0.334 3.666 21 O -0.427 6.427 22 C -0.106 4.106 23 C -0.142 4.142 24 C -0.156 4.156 25 C -0.126 4.126 26 C -0.156 4.156 27 C -0.145 4.145 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.033 0.967 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.239 0.761 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.117 0.883 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.090 0.910 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.777 4.224 -11.450 22.394 hybrid contribution -0.617 -0.897 2.284 2.530 sum -19.393 3.327 -9.166 21.707 Atomic orbital electron populations 1.22148 0.95203 1.02124 1.02513 1.20927 0.93209 0.97699 0.84066 0.89488 1.22503 0.89090 1.00848 0.96183 1.61559 1.03224 1.12314 1.46607 1.22574 1.03024 0.88412 0.98705 1.21918 0.96161 0.97760 0.93124 1.19626 0.87593 0.83655 0.85277 1.90534 1.69782 1.52961 1.30557 1.42220 1.10969 1.44829 1.25132 1.19416 0.83178 1.27902 1.12752 0.86291 1.25034 0.95550 0.97454 0.98117 1.69620 1.07499 1.37184 1.37865 0.86681 0.79675 0.80087 0.82975 1.19625 1.20227 1.19572 1.45769 1.66372 1.14334 1.08700 1.19707 0.76627 0.86547 0.83675 1.90664 1.50733 1.15997 1.85288 1.22921 0.97665 0.96622 0.93397 1.23199 0.93220 1.01190 0.96576 1.23263 0.97145 1.01055 0.94117 1.23568 0.95397 0.95270 0.98345 1.22600 0.98444 0.98868 0.95650 1.22575 0.98800 0.96631 0.96445 1.23293 1.01223 0.96438 0.92108 0.92384 0.91756 0.91916 0.93569 0.90314 0.96702 0.88566 0.91951 0.93404 0.89362 0.79788 0.91626 0.76078 0.90821 0.90826 0.91360 0.91567 0.88348 0.91425 0.91859 0.91097 0.91797 0.91043 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.15 1.65 2.35 -67.92 -0.16 1.49 16 3 H 0.09 1.17 6.23 -51.93 -0.32 0.85 16 4 C 0.04 0.47 4.52 -3.82 -0.02 0.45 16 5 N -0.51 -7.56 4.22 -244.36 -1.03 -8.59 16 6 C 0.02 0.33 8.96 60.06 0.54 0.86 16 7 C 0.04 0.66 5.45 -4.97 -0.03 0.63 16 8 C 0.45 9.84 7.47 -10.98 -0.08 9.76 16 9 O -0.56 -14.24 13.91 5.55 0.08 -14.16 16 10 N -0.59 -13.68 5.09 -10.96 -0.06 -13.73 16 11 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 12 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 13 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 14 N -0.88 -25.49 13.96 55.50 0.77 -24.71 16 15 Si 0.88 19.05 27.74 -169.99 -4.71 14.33 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 19 N -0.70 -8.32 4.80 -53.80 -0.26 -8.57 16 20 C 0.55 7.42 7.17 -10.98 -0.08 7.34 16 21 O -0.55 -9.22 16.17 5.55 0.09 -9.13 16 22 C -0.10 -1.17 1.26 -150.38 -0.19 -1.36 16 23 C -0.10 -1.23 6.07 -22.15 -0.13 -1.37 16 24 C -0.12 -1.18 6.41 -22.15 -0.14 -1.32 16 25 C -0.11 -0.95 5.14 -85.36 -0.44 -1.39 16 26 C -0.12 -0.96 6.20 -24.34 -0.15 -1.11 16 27 C -0.11 -0.97 5.86 -24.30 -0.14 -1.11 16 28 C -0.09 -1.01 5.68 -22.47 -0.13 -1.13 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.47 8.12 -51.93 -0.42 0.04 16 33 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 34 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 16 35 H 0.10 1.88 5.83 -51.93 -0.30 1.57 16 36 H 0.06 0.97 6.58 -51.93 -0.34 0.62 16 37 H 0.05 0.68 8.12 -51.92 -0.42 0.26 16 38 H 0.09 1.17 7.93 -51.93 -0.41 0.76 16 39 H 0.37 7.50 5.76 -40.82 -0.24 7.27 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.40 4.47 8.60 -40.82 -0.35 4.12 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.87 7.80 -51.92 -0.41 0.47 16 44 H 0.07 0.63 7.82 -51.92 -0.41 0.23 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.52 7.81 -51.93 -0.41 0.11 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.60 7.80 -51.93 -0.41 0.20 16 50 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 405.91 15.07 6.12 6.12 Total: -1.00 -32.72 405.91 -9.10 -41.82 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -9.05 Total: 13.59 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.05 Total: 3.05 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.57 Total: -55.61 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: 0.17 Total: -23.29 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.72 -9.10 -41.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268734829.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.469 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds