Wall clock time and date at job start Sat Apr 11 2020 05:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.53005 * 109.46982 * 120.00322 * 2 1 3 5 5 N 1.46900 * 109.46927 * 174.99932 * 4 2 1 6 6 C 1.46895 * 111.00057 * 66.04539 * 5 4 2 7 7 C 1.46896 * 110.99599 * 189.99671 * 5 4 2 8 8 C 1.50708 * 109.46922 * 170.00220 * 7 5 4 9 9 O 1.21289 * 119.99853 * 359.97438 * 8 7 5 10 10 N 1.34772 * 119.99805 * 180.02562 * 8 7 5 11 11 C 1.37102 * 119.99993 * 180.02562 * 10 8 7 12 12 H 1.07996 * 119.99424 * 359.97438 * 11 10 8 13 13 C 1.38949 * 120.00086 * 180.02562 * 11 10 8 14 14 N 1.31414 * 119.99936 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 120.00121 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46867 * 90.00357 * 15 13 11 17 17 H 1.48500 * 109.46897 * 210.00261 * 15 13 11 18 18 H 1.48503 * 109.46872 * 330.00273 * 15 13 11 19 19 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 20 20 C 1.34771 * 119.99635 * 85.00546 * 19 2 1 21 21 O 1.21284 * 120.00644 * 359.97438 * 20 19 2 22 22 C 1.50706 * 119.99767 * 180.02562 * 20 19 2 23 23 C 1.55926 * 115.92008 * 297.93185 * 22 20 19 24 24 C 1.58466 * 103.90819 * 199.43257 * 23 22 20 25 25 C 1.55930 * 103.90564 * 359.97438 * 24 23 22 26 26 C 1.55920 * 104.50047 * 289.45427 * 25 24 23 27 27 C 1.54584 * 104.64440 * 71.08515 * 26 25 24 28 28 C 1.56949 * 101.40945 * 33.75383 * 25 24 23 29 29 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 31 31 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 32 32 H 1.09000 * 109.46692 * 294.99866 * 4 2 1 33 33 H 1.08993 * 109.47016 * 54.99791 * 4 2 1 34 34 H 1.09008 * 109.47354 * 59.99412 * 6 5 4 35 35 H 1.09005 * 109.47377 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47102 * 300.00037 * 6 5 4 37 37 H 1.09007 * 109.47297 * 289.99900 * 7 5 4 38 38 H 1.08996 * 109.47274 * 49.99931 * 7 5 4 39 39 H 0.97004 * 120.00221 * 359.97438 * 10 8 7 40 40 H 0.96998 * 119.99898 * 180.02562 * 14 13 11 41 41 H 0.97000 * 119.99818 * 265.00273 * 19 2 1 42 42 H 1.09000 * 110.40608 * 318.76793 * 23 22 20 43 43 H 1.09008 * 110.39932 * 81.17945 * 23 22 20 44 44 H 1.09009 * 110.98664 * 241.34634 * 24 23 22 45 45 H 1.08998 * 110.62900 * 118.48762 * 24 23 22 46 46 H 1.08996 * 115.92195 * 160.57274 * 25 24 23 47 47 H 1.08999 * 110.40652 * 312.29389 * 26 25 24 48 48 H 1.09002 * 110.50239 * 189.92476 * 26 25 24 49 49 H 1.08995 * 110.40340 * 241.21240 * 27 26 25 50 50 H 1.08995 * 110.50347 * 118.84110 * 27 26 25 51 51 H 1.08997 * 112.02938 * 189.50072 * 28 25 24 52 52 H 1.09001 * 112.02859 * 62.97213 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5040 -0.8268 1.1904 6 6 4.1310 0.4991 1.2720 7 6 4.0106 -1.7145 2.2454 8 6 5.4724 -1.9938 2.0079 9 8 6.0364 -1.5022 1.0532 10 7 6.1526 -2.7908 2.8555 11 6 7.4825 -3.0445 2.6397 12 1 7.9849 -2.6061 1.7902 13 6 8.1837 -3.8666 3.5134 14 7 9.4586 -4.1094 3.3068 15 14 7.3145 -4.6256 4.9824 16 1 6.7450 -5.9413 4.5951 17 1 8.2860 -4.8133 6.0897 18 1 6.2214 -3.7255 5.4301 19 7 2.0184 -0.6907 -1.1962 20 6 2.1471 -0.0183 -2.3571 21 8 1.8584 1.1584 -2.4117 22 6 2.6489 -0.7289 -3.5877 23 6 4.0936 -1.3088 -3.4985 24 6 4.5184 -1.5074 -5.0122 25 6 3.2745 -1.0220 -5.8174 26 6 2.1939 -2.1172 -5.5643 27 6 1.7795 -1.9235 -4.0877 28 6 2.7396 0.1314 -4.8970 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.7516 -0.1584 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 3.8524 0.9757 2.2120 35 1 5.2148 0.3920 1.2266 36 1 3.7911 1.1137 0.4384 37 1 3.8857 -1.2338 3.2158 38 1 3.4544 -2.6517 2.2299 39 1 5.7014 -3.1843 3.6188 40 1 9.9479 -4.6836 3.9164 41 1 2.2490 -1.6318 -1.1526 42 1 4.7548 -0.6056 -2.9922 43 1 4.0869 -2.2670 -2.9788 44 1 4.7231 -2.5566 -5.2258 45 1 5.3883 -0.8953 -5.2503 46 1 3.4539 -0.7618 -6.8605 47 1 2.6175 -3.1105 -5.7128 48 1 1.3376 -1.9679 -6.2220 49 1 1.9994 -2.8215 -3.5104 50 1 0.7199 -1.6777 -4.0177 51 1 1.7622 0.4909 -5.2185 52 1 3.4585 0.9452 -4.8020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268734829.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:10:29 Heat of formation + Delta-G solvation = -88.343816 kcal Electronic energy + Delta-G solvation = -30643.133391 eV Core-core repulsion = 26641.370398 eV Total energy + Delta-G solvation = -4001.762993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68566 -40.54358 -39.74715 -38.21501 -36.12391 -35.52503 -33.72411 -32.44563 -31.19198 -30.18893 -29.61444 -28.61229 -28.01873 -26.55303 -24.32502 -23.19126 -23.13576 -21.40878 -21.20965 -20.51313 -20.14571 -19.96606 -18.11999 -17.69359 -17.31721 -16.79870 -16.66315 -16.37205 -16.14570 -15.92264 -15.70639 -15.48931 -15.31444 -14.93459 -14.83995 -14.33791 -14.14917 -13.79359 -13.63519 -13.49843 -13.42915 -13.20626 -13.12790 -12.89330 -12.79258 -12.67942 -12.64768 -12.44295 -12.38283 -12.18989 -11.98586 -11.96986 -11.87572 -11.81565 -11.71275 -11.44437 -11.29228 -10.88625 -10.70059 -10.33372 -10.20348 -9.96859 -9.21405 -8.39038 -5.99427 1.31045 1.36935 1.45508 1.64715 2.00819 2.24608 2.28304 2.62891 3.16947 3.26683 3.34315 3.51192 3.56549 3.77878 4.01420 4.09739 4.16228 4.20166 4.23198 4.32362 4.37592 4.39499 4.44142 4.46460 4.53309 4.54973 4.56836 4.57624 4.69014 4.70145 4.79012 4.81750 4.83711 5.01499 5.05005 5.07840 5.12776 5.15913 5.17474 5.21662 5.29273 5.33759 5.36151 5.44011 5.55474 5.61337 5.90767 6.01261 6.16671 6.62907 6.65544 6.92288 7.33180 7.43919 8.02435 8.78829 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012529 B = 0.002962 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.243804 B = 9451.789206 C =10884.173629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.059 0.941 4 C 0.049 3.951 5 N -0.531 5.531 6 C 0.032 3.968 7 C 0.054 3.946 8 C 0.451 3.549 9 O -0.604 6.604 10 N -0.594 5.594 11 C -0.324 4.324 12 H 0.053 0.947 13 C -0.017 4.017 14 N -0.937 5.937 15 Si 0.965 3.035 16 H -0.256 1.256 17 H -0.279 1.279 18 H -0.231 1.231 19 N -0.695 5.695 20 C 0.541 3.459 21 O -0.589 6.589 22 C -0.106 4.106 23 C -0.105 4.105 24 C -0.117 4.117 25 C -0.096 4.096 26 C -0.114 4.114 27 C -0.101 4.101 28 C -0.098 4.098 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.035 0.965 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.128 0.872 39 H 0.389 0.611 40 H 0.278 0.722 41 H 0.410 0.590 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.118 0.882 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.068 0.932 51 H 0.072 0.928 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.288 1.330 -8.837 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.077 0.923 4 C -0.079 4.079 5 N -0.255 5.255 6 C -0.117 4.117 7 C -0.076 4.076 8 C 0.239 3.761 9 O -0.488 6.488 10 N -0.236 5.236 11 C -0.454 4.454 12 H 0.071 0.929 13 C -0.215 4.215 14 N -0.578 5.578 15 Si 0.785 3.215 16 H -0.180 1.180 17 H -0.204 1.204 18 H -0.154 1.154 19 N -0.344 5.344 20 C 0.329 3.671 21 O -0.470 6.470 22 C -0.110 4.110 23 C -0.143 4.143 24 C -0.154 4.154 25 C -0.114 4.114 26 C -0.151 4.151 27 C -0.138 4.138 28 C -0.136 4.136 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.146 0.854 39 H 0.224 0.776 40 H 0.087 0.913 41 H 0.246 0.754 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.136 0.864 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.086 0.914 51 H 0.091 0.909 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.807 2.171 -9.872 24.946 hybrid contribution 0.695 -0.139 1.697 1.839 sum -22.111 2.031 -8.175 23.662 Atomic orbital electron populations 1.22051 0.93094 1.03323 1.02466 1.21013 0.94744 0.96315 0.84083 0.92257 1.22582 0.86089 1.02787 0.96424 1.61451 1.05687 1.11400 1.46975 1.22318 1.00275 0.89548 0.99525 1.21862 0.91277 1.00021 0.94479 1.20943 0.90127 0.81381 0.83631 1.90537 1.71651 1.54078 1.32487 1.42037 1.09299 1.45833 1.26413 1.18970 0.85597 1.29003 1.11785 0.92859 1.26113 0.96198 0.97337 1.01861 1.69813 1.09931 1.38325 1.39775 0.85363 0.79160 0.79829 0.77129 1.18000 1.20411 1.15395 1.45791 1.65540 1.14482 1.08565 1.20123 0.76111 0.86192 0.84716 1.90635 1.52738 1.17686 1.85990 1.22919 0.97625 0.97648 0.92759 1.23152 0.93161 1.00060 0.97889 1.23280 0.97652 1.01822 0.92691 1.23590 0.94761 0.94394 0.98643 1.22610 0.98597 0.98954 0.94949 1.22576 0.98437 0.95551 0.97273 1.23315 1.00838 0.96673 0.92773 0.90465 0.89963 0.93841 0.91403 0.87416 0.94694 0.93032 0.92552 0.90514 0.85423 0.77561 0.91271 0.75444 0.94383 0.90930 0.90050 0.92144 0.86417 0.90248 0.90407 0.90221 0.91350 0.90945 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.48 71.98 0.68 -1.72 16 2 C 0.14 3.01 2.35 44.99 0.11 3.12 16 3 H 0.06 1.60 6.23 -2.39 -0.01 1.58 16 4 C 0.05 0.88 4.52 86.30 0.39 1.27 16 5 N -0.53 -14.60 4.22 -927.03 -3.92 -18.51 16 6 C 0.03 1.00 8.96 127.69 1.14 2.15 16 7 C 0.05 1.52 5.45 85.56 0.47 1.99 16 8 C 0.45 19.51 7.47 87.66 0.66 20.16 16 9 O -0.60 -32.44 13.91 -3.06 -0.04 -32.49 16 10 N -0.59 -27.07 5.09 -306.98 -1.56 -28.64 16 11 C -0.32 -18.71 10.16 84.04 0.85 -17.86 16 12 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 13 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 14 N -0.94 -56.33 13.96 21.66 0.30 -56.03 16 15 Si 0.97 38.04 27.74 68.60 1.90 39.94 16 16 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 17 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 18 H -0.23 -7.55 6.52 99.48 0.65 -6.91 16 19 N -0.69 -16.08 4.80 -442.51 -2.12 -18.21 16 20 C 0.54 15.09 7.17 87.66 0.63 15.72 16 21 O -0.59 -20.79 16.17 -3.04 -0.05 -20.84 16 22 C -0.11 -2.45 1.26 -49.50 -0.06 -2.51 16 23 C -0.10 -2.60 6.07 33.56 0.20 -2.40 16 24 C -0.12 -2.31 6.41 33.56 0.22 -2.10 16 25 C -0.10 -1.58 5.14 -7.38 -0.04 -1.62 16 26 C -0.11 -1.58 6.20 32.14 0.20 -1.38 16 27 C -0.10 -1.67 5.86 32.17 0.19 -1.48 16 28 C -0.10 -2.18 5.68 33.36 0.19 -1.99 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 33 H 0.11 1.42 7.93 -2.39 -0.02 1.40 16 34 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.05 2.11 5.83 -2.38 -0.01 2.10 16 36 H 0.06 1.82 6.58 -2.39 -0.02 1.81 16 37 H 0.08 1.79 8.12 -2.38 -0.02 1.77 16 38 H 0.13 2.66 7.93 -2.39 -0.02 2.64 16 39 H 0.39 14.53 5.76 -92.71 -0.53 13.99 16 40 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.41 8.53 8.60 -92.71 -0.80 7.74 16 42 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.77 7.80 -2.38 -0.02 1.75 16 44 H 0.08 1.41 7.82 -2.38 -0.02 1.39 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.08 0.96 7.81 -2.39 -0.02 0.94 16 48 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.08 1.18 7.80 -2.39 -0.02 1.17 16 50 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -80.27 405.91 0.33 -79.94 By element: Atomic # 1 Polarization: 44.41 SS G_CDS: -0.47 Total: 43.94 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 6.29 Total: 10.89 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -7.30 Total: -121.39 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -0.09 Total: -53.32 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.94 kcal Total: -80.27 0.33 -79.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268734829.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.404 kcal (2) G-P(sol) polarization free energy of solvation -80.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds