Wall clock time and date at job start Sat Apr 11 2020 05:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47011 * 2 1 4 4 C 1.52997 * 109.47224 * 240.00503 * 2 1 3 5 5 N 1.46899 * 109.47086 * 184.32961 * 4 2 1 6 6 C 1.46897 * 111.00067 * 163.80823 * 5 4 2 7 7 C 1.46906 * 110.99888 * 287.75728 * 5 4 2 8 8 C 1.50691 * 109.47189 * 170.00196 * 7 5 4 9 9 O 1.21294 * 120.00444 * 0.02562 * 8 7 5 10 10 N 1.34781 * 119.99838 * 179.97438 * 8 7 5 11 11 C 1.37099 * 119.99706 * 180.02562 * 10 8 7 12 12 H 1.07997 * 120.00524 * 359.97438 * 11 10 8 13 13 C 1.38957 * 119.99917 * 180.02562 * 11 10 8 14 14 N 1.31406 * 119.99943 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99560 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47164 * 90.00492 * 15 13 11 17 17 H 1.48505 * 109.46797 * 210.00315 * 15 13 11 18 18 H 1.48492 * 109.47542 * 330.00266 * 15 13 11 19 19 N 1.46500 * 109.47332 * 119.99734 * 2 1 3 20 20 C 1.34770 * 120.00453 * 271.38522 * 19 2 1 21 21 O 1.21282 * 119.99824 * 4.74723 * 20 19 2 22 22 C 1.50698 * 120.00040 * 184.75152 * 20 19 2 23 23 C 1.52998 * 109.47603 * 94.87020 * 22 20 19 24 24 C 1.53005 * 117.49403 * 248.74665 * 23 22 20 25 25 C 1.52998 * 117.50141 * 180.08826 * 23 22 20 26 26 C 1.53011 * 109.46997 * 214.86848 * 22 20 19 27 27 C 1.52996 * 117.50032 * 134.00886 * 26 22 20 28 28 C 1.52992 * 117.49900 * 65.34763 * 26 22 20 29 29 H 1.09005 * 109.46976 * 299.99612 * 1 2 3 30 30 H 1.08993 * 109.47155 * 59.99885 * 1 2 3 31 31 H 1.09002 * 109.47011 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46916 * 304.32069 * 4 2 1 33 33 H 1.08999 * 109.47320 * 64.32357 * 4 2 1 34 34 H 1.08997 * 109.47715 * 65.32881 * 6 5 4 35 35 H 1.09000 * 109.47225 * 185.33350 * 6 5 4 36 36 H 1.09004 * 109.46981 * 305.33159 * 6 5 4 37 37 H 1.09001 * 109.46987 * 290.00259 * 7 5 4 38 38 H 1.09002 * 109.47014 * 49.99841 * 7 5 4 39 39 H 0.96991 * 120.00209 * 0.02562 * 10 8 7 40 40 H 0.97003 * 119.99821 * 179.97438 * 14 13 11 41 41 H 0.97002 * 119.99484 * 91.10638 * 19 2 1 42 42 H 1.08999 * 109.47321 * 334.86476 * 22 20 19 43 43 H 1.09003 * 115.55036 * 34.40935 * 23 22 20 44 44 H 1.08997 * 117.50063 * 359.97438 * 24 23 22 45 45 H 1.09000 * 117.49544 * 145.02055 * 24 23 22 46 46 H 1.08995 * 117.49821 * 214.97750 * 25 23 22 47 47 H 1.08996 * 117.49806 * 359.97412 * 25 23 22 48 48 H 1.08994 * 115.54606 * 279.68099 * 26 22 20 49 49 H 1.09006 * 117.49579 * 359.97438 * 27 26 22 50 50 H 1.08998 * 117.49927 * 145.01602 * 27 26 22 51 51 H 1.09006 * 117.50124 * 214.98039 * 28 26 22 52 52 H 1.09008 * 117.50023 * 359.97438 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5053 -0.8123 -1.1981 6 6 4.0044 -1.8096 -2.1543 7 6 4.1230 0.4994 -1.4350 8 6 5.5977 0.4217 -1.1350 9 8 6.0864 -0.6236 -0.7611 10 7 6.3739 1.5135 -1.2832 11 6 7.7157 1.4427 -1.0107 12 1 8.1507 0.5122 -0.6770 13 6 8.5159 2.5684 -1.1630 14 7 9.8019 2.5007 -0.9013 15 14 7.7635 4.1780 -1.7395 16 1 7.3126 4.9633 -0.5625 17 1 8.7782 4.9563 -2.4945 18 1 6.6018 3.8942 -2.6197 19 7 2.0184 -0.6905 1.1962 20 6 2.2165 -0.0025 2.3379 21 8 1.9096 1.1692 2.4008 22 6 2.8194 -0.6888 3.5364 23 6 4.3302 -0.4482 3.5556 24 6 5.2402 -1.6492 3.2894 25 6 5.1302 -1.0700 4.7020 26 6 2.1968 -0.1236 4.8147 27 6 1.7469 -1.1223 5.8829 28 6 0.7055 -0.3758 5.0454 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6148 -1.7240 -1.2889 33 1 1.7414 -0.1645 -2.1375 34 1 3.7896 -1.4783 -3.1702 35 1 5.0811 -1.9253 -2.0298 36 1 3.5128 -2.7653 -1.9723 37 1 3.9787 0.7861 -2.4767 38 1 3.6588 1.2421 -0.7861 39 1 5.9833 2.3493 -1.5825 40 1 10.3606 3.2865 -1.0080 41 1 2.1954 -1.6439 1.1675 42 1 2.6227 -1.7594 3.4792 43 1 4.6564 0.5228 3.1828 44 1 4.7625 -2.6106 3.1011 45 1 6.1652 -1.4681 2.7420 46 1 5.9828 -0.5082 5.0834 47 1 4.5800 -1.6501 5.4429 48 1 2.6048 0.8280 5.1553 49 1 1.8942 -2.1821 5.6748 50 1 1.8588 -0.8276 6.9263 51 1 0.1325 0.4097 5.5383 52 1 0.1678 -0.9441 4.2864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268752314.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:10:36 Heat of formation + Delta-G solvation = -14.196040 kcal Electronic energy + Delta-G solvation = -31003.799284 eV Core-core repulsion = 27005.251580 eV Total energy + Delta-G solvation = -3998.547705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.19075 -38.87487 -37.87109 -36.76100 -36.10710 -34.67840 -33.78343 -31.64650 -31.33402 -28.91955 -28.23349 -26.98734 -24.59659 -23.00808 -22.49953 -22.20963 -21.56036 -21.31668 -20.47006 -19.62665 -19.29108 -18.24016 -17.30571 -16.25847 -16.16424 -15.90061 -15.33151 -15.00852 -14.86311 -14.64548 -14.45029 -14.15970 -14.09412 -13.70692 -13.35075 -13.27871 -13.15853 -12.93265 -12.49460 -12.38079 -12.17490 -11.99714 -11.81468 -11.75219 -11.65828 -11.55637 -11.43115 -11.29265 -11.27120 -11.10687 -10.68426 -10.56762 -10.51968 -10.40679 -10.24268 -9.95792 -9.74555 -9.50844 -9.34932 -8.88759 -8.54767 -8.15397 -7.95980 -6.29200 -3.79969 2.82349 3.04753 3.10060 3.17432 3.22587 3.76532 3.78584 3.93827 3.95089 4.12841 4.54726 4.61401 4.73948 4.76804 4.88835 4.99034 5.04366 5.10895 5.15622 5.18832 5.25770 5.28430 5.35878 5.37208 5.48622 5.50005 5.51076 5.55783 5.60308 5.66675 5.73169 5.78452 5.81913 5.84425 5.87716 5.96121 5.97811 6.00497 6.09085 6.15685 6.18292 6.39024 6.44366 6.46546 6.65085 7.13846 7.27490 7.60784 7.71522 8.16696 8.45264 8.62779 8.97662 9.45305 9.86582 10.83955 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009912 B = 0.003831 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.144490 B = 7307.045709 C = 8534.294042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.087 0.913 4 C 0.043 3.957 5 N -0.511 5.511 6 C 0.022 3.978 7 C 0.040 3.960 8 C 0.456 3.544 9 O -0.557 6.557 10 N -0.592 5.592 11 C -0.302 4.302 12 H 0.119 0.881 13 C 0.042 3.958 14 N -0.882 5.882 15 Si 0.877 3.123 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 N -0.705 5.705 20 C 0.529 3.471 21 O -0.543 6.543 22 C -0.038 4.038 23 C -0.139 4.139 24 C -0.163 4.163 25 C -0.174 4.174 26 C -0.122 4.122 27 C -0.178 4.178 28 C -0.177 4.177 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.014 0.986 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.369 0.631 40 H 0.273 0.727 41 H 0.401 0.599 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.111 0.889 49 H 0.092 0.908 50 H 0.094 0.906 51 H 0.093 0.907 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.644 -7.657 5.728 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.086 4.086 5 N -0.235 5.235 6 C -0.125 4.125 7 C -0.091 4.091 8 C 0.242 3.758 9 O -0.439 6.439 10 N -0.232 5.232 11 C -0.431 4.431 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.523 5.523 15 Si 0.703 3.297 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.196 1.196 19 N -0.355 5.355 20 C 0.315 3.685 21 O -0.420 6.420 22 C -0.059 4.059 23 C -0.158 4.158 24 C -0.200 4.200 25 C -0.211 4.211 26 C -0.141 4.141 27 C -0.215 4.215 28 C -0.214 4.214 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.202 0.798 40 H 0.083 0.917 41 H 0.235 0.765 42 H 0.101 0.899 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.121 0.879 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.129 0.871 49 H 0.111 0.889 50 H 0.113 0.887 51 H 0.112 0.888 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.158 -7.572 6.482 21.596 hybrid contribution -0.549 1.307 -1.435 2.017 sum -19.707 -6.265 5.047 21.286 Atomic orbital electron populations 1.22145 0.95317 1.01951 1.02521 1.20930 0.93097 0.97762 0.84272 0.89540 1.22505 0.89074 1.00887 0.96149 1.61550 1.03395 1.06669 1.51888 1.22557 1.04193 0.94135 0.91650 1.21964 0.95484 0.91896 0.99777 1.19571 0.87020 0.84897 0.84307 1.90505 1.74511 1.29183 1.49695 1.42218 1.09187 1.10364 1.61414 1.19396 0.80996 1.00182 1.42490 0.86298 1.25012 0.95323 0.97976 0.97756 1.69617 1.04139 1.30377 1.48122 0.86713 0.79250 0.84263 0.79433 1.19560 1.20210 1.19584 1.45765 1.67261 1.12427 1.10043 1.20358 0.77220 0.87026 0.83885 1.90665 1.51190 1.16482 1.83671 1.20382 0.94231 0.99545 0.91766 1.21904 0.89893 0.99320 1.04691 1.23023 1.02137 0.96577 0.98243 1.22929 1.02281 1.04095 0.91794 1.21915 0.96409 1.00413 0.95365 1.23045 1.04157 0.97624 0.96720 1.22895 0.92138 1.03268 1.03079 0.91860 0.91855 0.92545 0.90282 0.93583 0.96750 0.88385 0.92238 0.93510 0.89474 0.79830 0.91673 0.76520 0.89865 0.87363 0.89073 0.87851 0.88815 0.88931 0.87099 0.88934 0.88744 0.88839 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.51 37.16 0.35 -1.16 16 2 C 0.14 1.68 2.55 -67.93 -0.17 1.51 16 3 H 0.09 1.23 6.17 -51.93 -0.32 0.91 16 4 C 0.04 0.47 4.55 -3.83 -0.02 0.45 16 5 N -0.51 -7.51 4.19 -244.37 -1.02 -8.53 16 6 C 0.02 0.32 9.18 60.06 0.55 0.87 16 7 C 0.04 0.68 5.30 -4.98 -0.03 0.65 16 8 C 0.46 10.23 7.52 -10.99 -0.08 10.15 16 9 O -0.56 -14.20 13.88 5.55 0.08 -14.12 16 10 N -0.59 -14.21 5.09 -10.96 -0.06 -14.27 16 11 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 12 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 13 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 14 N -0.88 -25.88 13.96 55.50 0.77 -25.10 16 15 Si 0.88 19.79 27.74 -169.99 -4.71 15.07 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -5.59 6.52 56.52 0.37 -5.22 16 19 N -0.70 -8.52 4.78 -53.81 -0.26 -8.78 16 20 C 0.53 7.50 6.58 -10.99 -0.07 7.42 16 21 O -0.54 -9.57 16.11 5.56 0.09 -9.48 16 22 C -0.04 -0.46 2.46 -91.77 -0.23 -0.68 16 23 C -0.14 -1.94 5.13 -90.62 -0.46 -2.41 16 24 C -0.16 -2.24 10.18 -26.69 -0.27 -2.51 16 25 C -0.17 -2.10 9.88 -26.69 -0.26 -2.36 16 26 C -0.12 -1.38 4.25 -90.62 -0.39 -1.77 16 27 C -0.18 -1.58 10.18 -26.70 -0.27 -1.85 16 28 C -0.18 -1.76 10.01 -26.70 -0.27 -2.03 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.73 7.87 -51.93 -0.41 0.32 16 33 H 0.05 0.47 8.05 -51.93 -0.42 0.05 16 34 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 35 H 0.10 1.79 5.91 -51.93 -0.31 1.48 16 36 H 0.06 0.71 7.97 -51.93 -0.41 0.30 16 37 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 38 H 0.09 1.43 6.49 -51.93 -0.34 1.09 16 39 H 0.37 7.98 5.76 -40.82 -0.24 7.74 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.40 4.25 8.61 -40.82 -0.35 3.89 16 42 H 0.08 0.85 7.65 -51.93 -0.40 0.46 16 43 H 0.11 1.84 8.11 -51.93 -0.42 1.42 16 44 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 45 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 46 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 49 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 50 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 52 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 LS Contribution 421.49 15.07 6.35 6.35 Total: -1.00 -32.81 421.49 -9.70 -42.51 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -9.07 Total: 17.66 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.86 Total: -1.32 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.56 Total: -56.68 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.17 Total: -23.60 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.71 Total: 15.07 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.81 -9.70 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268752314.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.313 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds