Wall clock time and date at job start Sat Apr 11 2020 05:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46930 * 2 1 4 4 C 1.52993 * 109.47660 * 239.99619 * 2 1 3 5 5 N 1.46905 * 109.47039 * 65.00109 * 4 2 1 6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46943 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00024 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99767 * 180.02562 * 7 6 5 10 10 C 1.37102 * 120.00095 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99386 * 359.97438 * 10 9 7 12 12 C 1.38941 * 120.00393 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99786 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00292 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47100 * 90.00207 * 14 12 10 16 16 H 1.48501 * 109.47251 * 210.00227 * 14 12 10 17 17 H 1.48503 * 109.46881 * 330.00341 * 14 12 10 18 18 C 1.53002 * 109.47018 * 119.99296 * 2 1 3 19 19 N 1.46497 * 109.47145 * 295.00697 * 18 2 1 20 20 C 1.34779 * 119.99900 * 179.97438 * 19 18 2 21 21 O 1.21279 * 120.00214 * 359.97438 * 20 19 18 22 22 C 1.50706 * 120.00162 * 179.97438 * 20 19 18 23 23 C 1.52300 * 115.91490 * 111.38656 * 22 20 19 24 24 C 1.52059 * 115.93123 * 179.67941 * 22 20 19 25 25 H 1.09003 * 117.25655 * 0.63315 * 24 22 20 26 26 C 1.52716 * 120.52653 * 149.26161 * 24 22 20 27 27 C 1.52884 * 110.14645 * 338.52538 * 26 24 22 28 28 C 1.53305 * 108.57897 * 54.52511 * 27 26 24 29 29 C 1.51672 * 108.14557 * 285.44627 * 28 27 26 30 30 H 1.09008 * 109.46827 * 60.00928 * 1 2 3 31 31 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47633 * 300.00550 * 1 2 3 33 33 H 1.09001 * 109.47393 * 305.00390 * 4 2 1 34 34 H 1.08998 * 109.47408 * 185.00036 * 4 2 1 35 35 H 1.00901 * 110.99869 * 56.04956 * 5 4 2 36 36 H 1.09004 * 109.47031 * 299.99620 * 6 5 4 37 37 H 1.08995 * 109.47111 * 59.99900 * 6 5 4 38 38 H 0.96997 * 120.00713 * 359.97438 * 9 7 6 39 39 H 0.97001 * 119.99428 * 179.97438 * 13 12 10 40 40 H 1.09002 * 109.46730 * 55.00366 * 18 2 1 41 41 H 1.08994 * 109.47589 * 175.00151 * 18 2 1 42 42 H 0.97000 * 120.00674 * 359.97438 * 19 18 2 43 43 H 1.08999 * 117.54167 * 213.90135 * 23 22 20 44 44 H 1.09006 * 117.53933 * 359.15241 * 23 22 20 45 45 H 1.08999 * 109.35548 * 98.73322 * 26 24 22 46 46 H 1.09001 * 109.35502 * 218.45875 * 26 24 22 47 47 H 1.09003 * 109.61455 * 174.24866 * 27 26 24 48 48 H 1.08994 * 109.61858 * 294.79563 * 27 26 24 49 49 H 1.08994 * 109.61883 * 45.28665 * 28 27 26 50 50 H 1.09003 * 109.61447 * 165.64245 * 28 27 26 51 51 H 1.09000 * 109.72292 * 294.55510 * 29 28 27 52 52 H 1.09003 * 108.14632 * 175.48578 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6515 0.0374 -2.4456 6 6 2.1250 -0.6273 -3.6671 7 6 1.7091 0.1784 -4.8708 8 8 1.0798 1.2051 -4.7254 9 7 2.0356 -0.2423 -6.1088 10 6 1.6569 0.4904 -7.2040 11 1 1.0965 1.4046 -7.0745 12 6 1.9939 0.0570 -8.4803 13 7 2.6753 -1.0556 -8.6378 14 14 1.4772 1.0550 -9.9725 15 1 2.5365 2.0434 -10.2979 16 1 1.2753 0.1466 -11.1298 17 1 0.2089 1.7682 -9.6759 18 6 2.0399 -0.7211 1.2494 19 7 1.6522 0.0355 2.4424 20 6 1.9953 -0.4133 3.6660 21 8 2.6246 -1.4438 3.7795 22 6 1.5970 0.3653 4.8933 23 6 0.5538 -0.2907 5.7883 24 6 2.0254 -0.2289 6.2259 25 1 2.5927 -1.1593 6.1983 26 6 2.3331 0.6771 7.4161 27 6 2.6641 2.0888 6.9316 28 6 1.5116 2.5858 6.0513 29 6 1.5983 1.8755 4.7140 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6055 -1.7198 -1.2951 34 1 3.1264 -0.7995 -1.2054 35 1 1.9883 0.9872 -2.3967 36 1 3.2119 -0.7051 -3.6404 37 1 1.6907 -1.6250 -3.7295 38 1 2.5386 -1.0635 -6.2252 39 1 2.9103 -1.3583 -9.5289 40 1 1.6053 -1.7197 1.2953 41 1 3.1262 -0.7994 1.2058 42 1 1.1486 0.8596 2.3517 43 1 -0.1524 0.3622 6.3014 44 1 0.1605 -1.2588 5.4779 45 1 1.4656 0.7153 8.0749 46 1 3.1858 0.2762 7.9642 47 1 2.7820 2.7517 7.7888 48 1 3.5862 2.0696 6.3508 49 1 0.5599 2.3586 6.5316 50 1 1.6002 3.6625 5.9059 51 1 2.5095 2.1755 4.1965 52 1 0.7338 2.1676 4.1177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270509469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:10:56 Heat of formation + Delta-G solvation = -75.364144 kcal Electronic energy + Delta-G solvation = -28454.443891 eV Core-core repulsion = 24453.243739 eV Total energy + Delta-G solvation = -4001.200153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09957 -38.84284 -38.30744 -37.12327 -34.95017 -33.87390 -33.54014 -32.50528 -31.26418 -31.12116 -27.43399 -27.06787 -25.36044 -24.87680 -23.89677 -22.81339 -21.85399 -20.91575 -20.55499 -19.25524 -18.76012 -17.92435 -17.75850 -16.46326 -15.93249 -15.81918 -15.55277 -15.29738 -14.86934 -14.73096 -14.46538 -14.40282 -14.26278 -14.17493 -13.83523 -13.64976 -13.47528 -13.13974 -12.92404 -12.64989 -12.49704 -12.44212 -12.30348 -11.93055 -11.68298 -11.52174 -11.47566 -11.34114 -11.15187 -11.07409 -10.99170 -10.98685 -10.87917 -10.41348 -10.39639 -10.22111 -10.13676 -9.92883 -9.51181 -9.30852 -8.46690 -8.06006 -7.95998 -6.41875 -3.82823 2.24378 2.83301 3.17623 3.26316 3.32281 3.34649 3.90782 4.06629 4.10366 4.17328 4.28126 4.30786 4.36309 4.57800 4.70326 4.74374 4.76158 4.83311 4.93644 5.00686 5.05516 5.15139 5.17170 5.25780 5.29984 5.33399 5.37594 5.41842 5.46639 5.56915 5.61953 5.63783 5.66748 5.67266 5.75112 5.77335 5.83577 5.86831 5.89073 5.94249 5.98474 6.08401 6.22988 6.26741 6.38814 7.19287 7.22839 7.54950 7.64466 7.96472 8.06131 8.61043 9.17627 9.54234 10.05551 10.75841 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.001489 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.703741 B =18798.011311 C =19172.303584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.123 3.877 19 N -0.721 5.721 20 C 0.545 3.455 21 O -0.541 6.541 22 C -0.145 4.145 23 C -0.153 4.153 24 C -0.115 4.115 25 H 0.116 0.884 26 C -0.090 4.090 27 C -0.123 4.123 28 C -0.120 4.120 29 C -0.083 4.083 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.029 0.971 35 H 0.348 0.652 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.402 0.598 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.073 0.927 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 2.674 31.107 31.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.000 4.000 19 N -0.373 5.373 20 C 0.331 3.669 21 O -0.418 6.418 22 C -0.149 4.149 23 C -0.190 4.190 24 C -0.134 4.134 25 H 0.134 0.866 26 C -0.127 4.127 27 C -0.160 4.160 28 C -0.158 4.158 29 C -0.121 4.121 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.167 0.833 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.237 0.763 43 H 0.123 0.877 44 H 0.116 0.884 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.091 0.909 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.534 2.234 31.028 31.147 hybrid contribution 0.848 0.374 -1.082 1.425 sum -0.686 2.608 29.946 30.067 Atomic orbital electron populations 1.21757 0.93712 1.02181 1.02079 1.21338 0.97636 0.99936 0.92937 0.90531 1.21894 0.97343 0.97976 0.89215 1.60037 1.64166 1.05824 0.99783 1.21667 0.97760 0.98660 0.90111 1.19808 0.85544 0.87926 0.84087 1.90517 1.44123 1.26435 1.85750 1.41867 1.49514 1.24214 1.04443 1.19707 1.32905 1.06722 0.83632 0.87921 1.25263 0.96923 0.96637 0.99113 1.69617 1.38927 1.21677 1.24068 0.85852 0.79144 0.79029 0.80225 1.20439 1.20918 1.19409 1.21415 1.00021 0.95468 0.83142 1.45946 1.57767 1.27979 1.05603 1.19643 0.78681 0.84838 0.83736 1.90698 1.39968 1.24603 1.86558 1.21064 1.07406 0.95515 0.90866 1.23208 0.92286 1.01927 1.01623 1.22271 0.97383 1.01194 0.92513 0.86621 1.21108 1.01817 0.94357 0.95453 1.21615 0.98731 0.96054 0.99618 1.21393 0.99141 0.99844 0.95374 1.20615 1.02642 0.90281 0.98530 0.90382 0.92789 0.93736 0.90730 0.95278 0.83251 0.93884 0.89580 0.77450 0.91875 0.91215 0.91477 0.76325 0.87712 0.88388 0.91281 0.91241 0.91679 0.91540 0.91514 0.91177 0.90862 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.95 37.16 0.33 -1.08 16 2 C -0.10 -0.96 2.57 -90.62 -0.23 -1.19 16 3 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 4 C 0.07 0.77 5.07 -3.82 -0.02 0.75 16 5 N -0.67 -10.29 5.58 -115.06 -0.64 -10.93 16 6 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 7 C 0.44 10.36 7.82 -10.99 -0.09 10.28 16 8 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 11 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 14 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.12 1.19 5.06 -4.04 -0.02 1.17 16 19 N -0.72 -6.33 5.18 -60.29 -0.31 -6.64 16 20 C 0.54 5.75 7.26 -10.98 -0.08 5.67 16 21 O -0.54 -7.81 16.07 5.56 0.09 -7.72 16 22 C -0.15 -1.12 2.49 -156.96 -0.39 -1.52 16 23 C -0.15 -1.05 9.29 -26.75 -0.25 -1.29 16 24 C -0.12 -0.88 5.66 -90.91 -0.51 -1.39 16 25 H 0.12 1.09 7.50 -51.93 -0.39 0.70 16 26 C -0.09 -0.50 5.83 -26.94 -0.16 -0.66 16 27 C -0.12 -0.64 5.92 -26.63 -0.16 -0.80 16 28 C -0.12 -0.58 5.70 -27.25 -0.16 -0.73 16 29 C -0.08 -0.48 4.63 -27.87 -0.13 -0.61 16 30 H 0.08 0.97 7.75 -51.92 -0.40 0.56 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.37 7.18 -51.93 -0.37 0.00 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.40 2.71 6.67 -40.82 -0.27 2.44 16 43 H 0.10 0.54 7.26 -51.93 -0.38 0.17 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.33 8.06 -51.93 -0.42 -0.09 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 48 H 0.07 0.40 8.03 -51.93 -0.42 -0.01 16 49 H 0.07 0.30 7.11 -51.93 -0.37 -0.07 16 50 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 51 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.07 0.33 7.81 -51.93 -0.41 -0.08 16 LS Contribution 414.42 15.07 6.25 6.25 Total: -1.00 -32.79 414.42 -10.10 -42.90 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -9.08 Total: 12.55 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.13 Total: 1.43 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.29 Total: -55.77 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.18 Total: -23.37 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.79 -10.10 -42.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270509469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.468 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds