Wall clock time and date at job start Sat Apr 11 2020 05:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46930 * 2 1 4 4 C 1.52993 * 109.47660 * 239.99619 * 2 1 3 5 5 N 1.46905 * 109.47039 * 65.00109 * 4 2 1 6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46943 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00024 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99767 * 180.02562 * 7 6 5 10 10 C 1.37102 * 120.00095 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99386 * 359.97438 * 10 9 7 12 12 C 1.38941 * 120.00393 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99786 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00292 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47100 * 90.00207 * 14 12 10 16 16 H 1.48501 * 109.47251 * 210.00227 * 14 12 10 17 17 H 1.48503 * 109.46881 * 330.00341 * 14 12 10 18 18 C 1.53002 * 109.47018 * 119.99296 * 2 1 3 19 19 N 1.46497 * 109.47145 * 295.00697 * 18 2 1 20 20 C 1.34779 * 119.99900 * 179.97438 * 19 18 2 21 21 O 1.21279 * 120.00214 * 359.97438 * 20 19 18 22 22 C 1.50706 * 120.00162 * 179.97438 * 20 19 18 23 23 C 1.52300 * 115.91490 * 111.38656 * 22 20 19 24 24 C 1.52059 * 115.93123 * 179.67941 * 22 20 19 25 25 H 1.09003 * 117.25655 * 0.63315 * 24 22 20 26 26 C 1.52716 * 120.52653 * 149.26161 * 24 22 20 27 27 C 1.52884 * 110.14645 * 338.52538 * 26 24 22 28 28 C 1.53305 * 108.57897 * 54.52511 * 27 26 24 29 29 C 1.51672 * 108.14557 * 285.44627 * 28 27 26 30 30 H 1.09008 * 109.46827 * 60.00928 * 1 2 3 31 31 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47633 * 300.00550 * 1 2 3 33 33 H 1.09001 * 109.47393 * 305.00390 * 4 2 1 34 34 H 1.08998 * 109.47408 * 185.00036 * 4 2 1 35 35 H 1.00901 * 110.99869 * 56.04956 * 5 4 2 36 36 H 1.09004 * 109.47031 * 299.99620 * 6 5 4 37 37 H 1.08995 * 109.47111 * 59.99900 * 6 5 4 38 38 H 0.96997 * 120.00713 * 359.97438 * 9 7 6 39 39 H 0.97001 * 119.99428 * 179.97438 * 13 12 10 40 40 H 1.09002 * 109.46730 * 55.00366 * 18 2 1 41 41 H 1.08994 * 109.47589 * 175.00151 * 18 2 1 42 42 H 0.97000 * 120.00674 * 359.97438 * 19 18 2 43 43 H 1.08999 * 117.54167 * 213.90135 * 23 22 20 44 44 H 1.09006 * 117.53933 * 359.15241 * 23 22 20 45 45 H 1.08999 * 109.35548 * 98.73322 * 26 24 22 46 46 H 1.09001 * 109.35502 * 218.45875 * 26 24 22 47 47 H 1.09003 * 109.61455 * 174.24866 * 27 26 24 48 48 H 1.08994 * 109.61858 * 294.79563 * 27 26 24 49 49 H 1.08994 * 109.61883 * 45.28665 * 28 27 26 50 50 H 1.09003 * 109.61447 * 165.64245 * 28 27 26 51 51 H 1.09000 * 109.72292 * 294.55510 * 29 28 27 52 52 H 1.09003 * 108.14632 * 175.48578 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6515 0.0374 -2.4456 6 6 2.1250 -0.6273 -3.6671 7 6 1.7091 0.1784 -4.8708 8 8 1.0798 1.2051 -4.7254 9 7 2.0356 -0.2423 -6.1088 10 6 1.6569 0.4904 -7.2040 11 1 1.0965 1.4046 -7.0745 12 6 1.9939 0.0570 -8.4803 13 7 2.6753 -1.0556 -8.6378 14 14 1.4772 1.0550 -9.9725 15 1 2.5365 2.0434 -10.2979 16 1 1.2753 0.1466 -11.1298 17 1 0.2089 1.7682 -9.6759 18 6 2.0399 -0.7211 1.2494 19 7 1.6522 0.0355 2.4424 20 6 1.9953 -0.4133 3.6660 21 8 2.6246 -1.4438 3.7795 22 6 1.5970 0.3653 4.8933 23 6 0.5538 -0.2907 5.7883 24 6 2.0254 -0.2289 6.2259 25 1 2.5927 -1.1593 6.1983 26 6 2.3331 0.6771 7.4161 27 6 2.6641 2.0888 6.9316 28 6 1.5116 2.5858 6.0513 29 6 1.5983 1.8755 4.7140 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6055 -1.7198 -1.2951 34 1 3.1264 -0.7995 -1.2054 35 1 1.9883 0.9872 -2.3967 36 1 3.2119 -0.7051 -3.6404 37 1 1.6907 -1.6250 -3.7295 38 1 2.5386 -1.0635 -6.2252 39 1 2.9103 -1.3583 -9.5289 40 1 1.6053 -1.7197 1.2953 41 1 3.1262 -0.7994 1.2058 42 1 1.1486 0.8596 2.3517 43 1 -0.1524 0.3622 6.3014 44 1 0.1605 -1.2588 5.4779 45 1 1.4656 0.7153 8.0749 46 1 3.1858 0.2762 7.9642 47 1 2.7820 2.7517 7.7888 48 1 3.5862 2.0696 6.3508 49 1 0.5599 2.3586 6.5316 50 1 1.6002 3.6625 5.9059 51 1 2.5095 2.1755 4.1965 52 1 0.7338 2.1676 4.1177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270509469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:10:56 Heat of formation + Delta-G solvation = -97.862419 kcal Electronic energy + Delta-G solvation = -28455.419490 eV Core-core repulsion = 24453.243739 eV Total energy + Delta-G solvation = -4002.175751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77151 -40.18857 -39.47974 -38.17555 -36.21789 -35.68499 -34.03087 -33.54649 -33.18085 -31.71426 -28.85857 -27.86805 -26.67745 -25.69607 -24.92471 -23.79008 -22.38199 -21.70889 -21.41203 -20.94007 -19.90976 -19.38198 -18.46025 -17.82887 -17.09763 -16.99569 -16.58672 -16.38218 -16.21155 -15.88947 -15.47090 -15.34275 -15.19815 -14.92224 -14.87415 -14.78101 -14.38820 -14.21322 -13.90613 -13.57000 -13.55882 -13.41751 -13.18131 -13.05610 -12.96693 -12.86668 -12.81236 -12.41870 -12.12552 -12.03971 -11.98608 -11.91493 -11.75764 -11.73388 -11.50403 -11.48433 -10.97270 -10.67628 -10.64628 -10.34335 -10.13537 -10.01612 -9.30913 -8.46700 -5.95671 1.38275 1.42093 1.45337 1.54972 2.05251 2.07395 2.29715 2.75093 2.94169 3.20682 3.51541 3.53198 3.65761 3.72506 3.83939 3.86028 3.97166 4.05137 4.11490 4.28635 4.32324 4.36695 4.47071 4.47875 4.52809 4.57521 4.59515 4.60985 4.71384 4.75239 4.79208 4.81920 4.94500 4.97359 5.01032 5.07095 5.12072 5.23426 5.24570 5.27475 5.33519 5.38092 5.40855 5.42433 5.51460 5.52181 5.87961 6.09383 6.40891 6.49537 6.59874 7.12403 7.18289 7.56225 8.11190 8.70662 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.001489 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.703741 B =18798.011311 C =19172.303584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.084 0.916 4 C 0.067 3.933 5 N -0.676 5.676 6 C 0.064 3.936 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.335 4.335 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.994 3.006 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.273 1.273 18 C 0.130 3.870 19 N -0.710 5.710 20 C 0.539 3.461 21 O -0.587 6.587 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.124 4.124 25 H 0.089 0.911 26 C -0.086 4.086 27 C -0.123 4.123 28 C -0.117 4.117 29 C -0.082 4.082 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.345 0.655 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.396 0.604 39 H 0.277 0.723 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.414 0.586 43 H 0.129 0.871 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.053 0.947 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.067 0.933 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 3.582 32.100 32.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.103 0.897 4 C -0.063 4.063 5 N -0.308 5.308 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.508 6.508 9 N -0.211 5.211 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.196 1.196 16 H -0.196 1.196 17 H -0.198 1.198 18 C 0.006 3.994 19 N -0.361 5.361 20 C 0.327 3.673 21 O -0.468 6.468 22 C -0.150 4.150 23 C -0.179 4.179 24 C -0.143 4.143 25 H 0.107 0.893 26 C -0.124 4.124 27 C -0.160 4.160 28 C -0.155 4.155 29 C -0.119 4.119 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.163 0.837 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.251 0.749 43 H 0.147 0.853 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.071 0.929 49 H 0.095 0.905 50 H 0.099 0.901 51 H 0.085 0.915 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.027 3.143 32.030 32.247 hybrid contribution 1.010 0.051 -1.342 1.680 sum -1.017 3.194 30.688 30.870 Atomic orbital electron populations 1.21701 0.93790 1.01909 1.01908 1.21193 0.97340 1.00051 0.91935 0.89743 1.21962 0.98151 0.97828 0.88335 1.60030 1.64653 1.05936 1.00218 1.21525 0.99071 0.98054 0.88146 1.20868 0.83882 0.87626 0.85058 1.90485 1.45528 1.28326 1.86502 1.41943 1.50064 1.24327 1.04776 1.19687 1.34459 1.07009 0.85321 0.90234 1.26048 0.96431 0.97561 1.01234 1.69679 1.39003 1.22427 1.25044 0.84915 0.78626 0.77821 0.76894 1.19593 1.19598 1.19752 1.21263 0.99549 0.95217 0.83368 1.45858 1.57199 1.28123 1.04964 1.20192 0.77887 0.84423 0.84835 1.90675 1.42131 1.26709 1.87247 1.21103 1.07970 0.96455 0.89488 1.23272 0.92126 1.01715 1.00793 1.22271 0.97871 1.00773 0.93414 0.89287 1.21114 1.02412 0.94190 0.94642 1.21621 0.98423 0.95930 1.00061 1.21404 0.99288 1.00255 0.94522 1.20652 1.03048 0.88635 0.99566 0.92654 0.93125 0.91752 0.90396 0.94162 0.83652 0.91687 0.87961 0.77010 0.91320 0.92000 0.92108 0.74892 0.85337 0.89501 0.89857 0.91373 0.90400 0.92851 0.90547 0.90117 0.91474 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.95 71.98 0.64 -1.91 16 2 C -0.09 -1.54 2.57 -10.80 -0.03 -1.57 16 3 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 4 C 0.07 1.45 5.07 86.30 0.44 1.89 16 5 N -0.68 -20.19 5.58 -517.93 -2.89 -23.08 16 6 C 0.06 2.17 6.17 85.56 0.53 2.70 16 7 C 0.44 20.73 7.82 87.66 0.69 21.41 16 8 O -0.62 -34.13 15.78 -3.07 -0.05 -34.18 16 9 N -0.57 -29.49 5.29 -306.99 -1.62 -31.11 16 10 C -0.34 -19.08 9.68 84.04 0.81 -18.27 16 11 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 12 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 13 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 14 Si 0.99 42.90 29.55 68.60 2.03 44.92 16 15 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 C 0.13 2.40 5.06 86.38 0.44 2.83 16 19 N -0.71 -11.68 5.18 -463.06 -2.40 -14.07 16 20 C 0.54 11.26 7.26 87.66 0.64 11.89 16 21 O -0.59 -17.46 16.07 -3.03 -0.05 -17.51 16 22 C -0.15 -2.13 2.49 -53.77 -0.13 -2.27 16 23 C -0.14 -1.75 9.29 30.58 0.28 -1.47 16 24 C -0.12 -1.86 5.66 -10.98 -0.06 -1.92 16 25 H 0.09 1.80 7.50 -2.39 -0.02 1.79 16 26 C -0.09 -0.85 5.83 30.46 0.18 -0.68 16 27 C -0.12 -1.06 5.92 30.66 0.18 -0.88 16 28 C -0.12 -0.82 5.70 30.26 0.17 -0.65 16 29 C -0.08 -0.78 4.63 29.85 0.14 -0.64 16 30 H 0.05 1.33 7.75 -2.38 -0.02 1.31 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.93 7.18 -2.39 -0.02 0.92 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.34 10.72 8.43 -89.69 -0.76 9.97 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 39 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.41 4.77 6.67 -92.71 -0.62 4.15 16 43 H 0.13 0.97 7.26 -2.39 -0.02 0.95 16 44 H 0.09 1.27 8.14 -2.38 -0.02 1.26 16 45 H 0.08 0.59 8.06 -2.39 -0.02 0.58 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.05 0.60 8.03 -2.39 -0.02 0.58 16 49 H 0.08 0.42 7.11 -2.39 -0.02 0.40 16 50 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 51 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.08 0.55 7.81 -2.39 -0.02 0.53 16 Total: -1.00 -72.20 414.42 -0.49 -72.69 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: -1.18 Total: 41.58 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.38 Total: 10.27 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -6.63 Total: -117.77 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -0.10 Total: -51.69 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.20 -0.49 -72.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270509469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.174 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds