Wall clock time and date at job start Sat Apr 11 2020 05:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21289 * 119.99484 * 2 1 4 4 N 1.34772 * 120.00502 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00233 * 174.84905 * 4 2 1 6 6 C 1.50700 * 110.01384 * 302.73446 * 5 4 2 7 7 O 1.21278 * 120.00049 * 141.65407 * 6 5 4 8 8 N 1.34778 * 120.00162 * 321.38148 * 6 5 4 9 9 C 1.47023 * 125.64673 * 355.34925 * 8 6 5 10 10 C 1.54335 * 107.26719 * 178.85058 * 9 8 6 11 11 C 1.55158 * 103.02060 * 338.14246 * 10 9 8 12 12 H 1.09006 * 111.00275 * 277.23421 * 11 10 9 13 13 C 1.52997 * 111.00896 * 153.37971 * 11 10 9 14 14 H 1.09006 * 109.46964 * 307.80521 * 13 11 10 15 15 C 1.52996 * 109.47315 * 187.80263 * 13 11 10 16 16 N 1.46502 * 109.47105 * 67.79925 * 13 11 10 17 17 C 1.36938 * 120.00096 * 204.99895 * 16 13 11 18 18 H 1.07990 * 119.99814 * 0.02562 * 17 16 13 19 19 C 1.38814 * 119.99553 * 179.97438 * 17 16 13 20 20 N 1.31617 * 120.00297 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47004 * 90.00355 * 21 19 17 23 23 H 1.48499 * 109.46862 * 210.00467 * 21 19 17 24 24 H 1.48499 * 109.46875 * 330.00229 * 21 19 17 25 25 C 1.47426 * 125.65019 * 175.66105 * 8 6 5 26 26 C 1.54254 * 110.03617 * 64.12963 * 5 4 2 27 27 C 1.54966 * 104.16379 * 95.75609 * 26 5 4 28 28 C 1.54895 * 102.77342 * 37.88722 * 27 26 5 29 29 C 1.53880 * 110.02898 * 181.34946 * 5 4 2 30 30 H 1.08992 * 109.46690 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47539 * 300.00646 * 1 2 3 32 32 H 1.09007 * 109.46396 * 60.00693 * 1 2 3 33 33 H 0.96998 * 119.99350 * 354.84066 * 4 2 1 34 34 H 1.09003 * 109.88200 * 298.39517 * 9 8 6 35 35 H 1.08997 * 109.88726 * 59.55915 * 9 8 6 36 36 H 1.08996 * 110.85115 * 219.67157 * 10 9 8 37 37 H 1.09002 * 110.66881 * 96.52168 * 10 9 8 38 38 H 1.09003 * 109.47078 * 180.02562 * 15 13 11 39 39 H 1.08996 * 109.47265 * 299.99976 * 15 13 11 40 40 H 1.09003 * 109.47133 * 60.00242 * 15 13 11 41 41 H 0.97001 * 119.99648 * 25.00364 * 16 13 11 42 42 H 0.97001 * 120.00003 * 179.97438 * 20 19 17 43 43 H 1.08999 * 110.36525 * 322.92304 * 25 8 6 44 44 H 1.08996 * 110.36606 * 85.25120 * 25 8 6 45 45 H 1.09009 * 110.48589 * 214.40393 * 26 5 4 46 46 H 1.09000 * 110.48976 * 337.04635 * 26 5 4 47 47 H 1.09004 * 110.71765 * 279.57279 * 27 26 5 48 48 H 1.08994 * 110.92407 * 156.29642 * 27 26 5 49 49 H 1.09004 * 110.48134 * 203.40586 * 28 27 26 50 50 H 1.08994 * 110.59964 * 80.82145 * 28 27 26 51 51 H 1.08995 * 110.03203 * 359.94443 * 29 5 4 52 52 H 1.09000 * 110.02747 * 121.37900 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6416 -1.1696 -0.1134 6 6 4.0618 -0.4596 -1.3745 7 8 5.0476 0.2467 -1.3729 8 7 3.3452 -0.6140 -2.5055 9 6 2.1956 -1.5146 -2.6752 10 6 1.6813 -1.3339 -4.1191 11 6 2.2227 0.0666 -4.5103 12 1 1.5687 0.8559 -4.1393 13 6 2.4097 0.1791 -6.0246 14 1 3.0092 -0.6591 -6.3799 15 6 3.1225 1.4920 -6.3544 16 7 1.1003 0.1559 -6.6814 17 6 0.9931 -0.2644 -7.9803 18 1 1.8737 -0.5793 -8.5203 19 6 -0.2476 -0.2868 -8.6023 20 7 -1.3209 0.0964 -7.9439 21 14 -0.3940 -0.8610 -10.3739 22 1 -0.6307 -2.3267 -10.4013 23 1 -1.5303 -0.1636 -11.0279 24 1 0.8628 -0.5488 -11.1008 25 6 3.5883 0.0875 -3.7791 26 6 4.2687 -0.4798 1.1155 27 6 4.6136 -1.6492 2.0720 28 6 5.0962 -2.7551 1.1007 29 6 4.1669 -2.6160 -0.1227 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.6989 -2.0054 0.0764 34 1 2.5070 -2.5471 -2.5171 35 1 1.4096 -1.2499 -1.9680 36 1 0.5918 -1.3480 -4.1476 37 1 2.0927 -2.1028 -4.7731 38 1 3.2553 1.5723 -7.4333 39 1 2.5231 2.3301 -5.9991 40 1 4.0968 1.5092 -5.8658 41 1 0.3093 0.4385 -6.1962 42 1 -2.1879 0.0811 -8.3787 43 1 3.9029 1.1143 -3.5926 44 1 4.3405 -0.4402 -4.3653 45 1 5.1725 0.0591 0.8307 46 1 3.5513 0.1960 1.5812 47 1 3.7282 -1.9744 2.6184 48 1 5.4090 -1.3665 2.7615 49 1 4.9825 -3.7389 1.5562 50 1 6.1338 -2.5866 0.8129 51 1 3.3353 -3.3158 -0.0415 52 1 4.7259 -2.8042 -1.0394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271540334.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:11:34 Heat of formation + Delta-G solvation = -60.854805 kcal Electronic energy + Delta-G solvation = -31522.810701 eV Core-core repulsion = 27522.239720 eV Total energy + Delta-G solvation = -4000.570980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.30094 -39.13648 -38.25479 -37.01450 -35.25752 -33.97069 -32.37701 -30.83090 -30.12080 -29.34411 -29.04379 -27.85888 -27.22759 -24.62769 -23.33493 -21.81324 -21.41921 -21.28052 -20.39589 -19.59903 -19.11532 -17.56983 -17.15267 -16.95437 -16.26556 -16.03969 -15.92813 -15.21894 -14.96084 -14.61632 -14.12783 -13.93215 -13.81092 -13.53399 -13.38898 -13.18923 -13.01627 -12.75640 -12.64184 -12.52842 -12.41762 -12.22939 -12.04288 -11.87148 -11.68166 -11.54169 -11.53531 -11.27754 -11.20615 -10.90198 -10.89234 -10.72569 -10.57130 -10.41434 -10.22849 -10.16065 -9.95998 -9.83644 -9.64539 -9.08077 -8.92412 -8.49847 -6.97332 -5.78270 -3.06428 2.40436 2.54222 2.92998 3.10322 3.41579 3.47645 3.48828 4.14682 4.18072 4.40053 4.55784 4.59243 4.73516 4.81623 4.95192 4.96011 5.05676 5.11366 5.13066 5.14351 5.22831 5.32372 5.34311 5.42055 5.49259 5.53518 5.55888 5.62611 5.70246 5.70980 5.74388 5.88269 5.93409 5.94297 6.01388 6.07704 6.12100 6.19820 6.22146 6.30630 6.38149 6.49032 6.59187 6.66062 6.88351 7.11301 7.19481 7.61392 7.69166 8.00262 8.21444 8.40335 9.51804 10.09084 10.44352 11.44406 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.002831 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.093829 B = 9886.782869 C =10247.776493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.526 6.526 4 N -0.723 5.723 5 C 0.162 3.838 6 C 0.537 3.463 7 O -0.535 6.535 8 N -0.609 5.609 9 C 0.097 3.903 10 C -0.118 4.118 11 C -0.100 4.100 12 H 0.079 0.921 13 C 0.186 3.814 14 H 0.049 0.951 15 C -0.168 4.168 16 N -0.722 5.722 17 C -0.235 4.235 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.283 1.283 25 C 0.115 3.885 26 C -0.117 4.117 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.119 4.119 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.403 0.597 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.081 0.919 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.870 -8.277 21.562 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.296 3.704 3 O -0.401 6.401 4 N -0.380 5.380 5 C 0.072 3.928 6 C 0.324 3.676 7 O -0.411 6.411 8 N -0.342 5.342 9 C -0.027 4.027 10 C -0.156 4.156 11 C -0.120 4.120 12 H 0.098 0.902 13 C 0.076 3.924 14 H 0.067 0.933 15 C -0.228 4.228 16 N -0.363 5.363 17 C -0.366 4.366 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.007 4.007 26 C -0.156 4.156 27 C -0.161 4.161 28 C -0.159 4.159 29 C -0.157 4.157 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.239 0.761 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.091 0.909 51 H 0.100 0.900 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.892 -7.174 21.423 23.931 hybrid contribution -0.855 -0.623 -0.982 1.443 sum 7.037 -7.797 20.441 22.982 Atomic orbital electron populations 1.21901 0.91203 1.04389 1.05735 1.20892 0.90767 0.83484 0.75207 1.90795 1.70420 1.31173 1.47753 1.46461 1.06063 1.09345 1.76086 1.21138 0.80943 0.96729 0.93993 1.20132 0.82738 0.81290 0.83440 1.90669 1.26587 1.39349 1.84502 1.48426 1.31606 1.42992 1.11224 1.22340 0.88360 0.93075 0.98887 1.22605 1.01971 0.97817 0.93165 1.22632 0.94934 0.97260 0.97152 0.90229 1.20122 0.88993 0.95316 0.87971 0.93350 1.22493 0.98690 1.00117 1.01512 1.42370 1.03034 1.78814 1.12065 1.19218 0.93139 1.35510 0.88740 0.91263 1.24709 0.95610 1.02403 0.98210 1.69654 0.98138 1.53987 1.36411 0.86226 0.77101 0.78137 0.84953 1.21803 1.21843 1.20826 1.22297 0.97792 0.97447 0.83200 1.22669 1.02294 0.97627 0.92978 1.22529 1.00973 0.95173 0.97388 1.22352 0.99495 0.99224 0.94856 1.22381 1.00201 0.92707 1.00391 0.90449 0.88727 0.88162 0.76111 0.92012 0.91500 0.89608 0.90411 0.92738 0.93448 0.94359 0.78329 0.93583 0.90700 0.91474 0.88845 0.90202 0.91505 0.91018 0.90982 0.90932 0.90043 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.13 36.01 0.36 -0.93 16 2 C 0.51 5.65 5.67 -10.99 -0.06 5.59 16 3 O -0.53 -8.55 14.84 5.55 0.08 -8.47 16 4 N -0.72 -6.24 2.95 -47.64 -0.14 -6.38 16 5 C 0.16 1.74 0.55 -131.86 -0.07 1.67 16 6 C 0.54 8.12 5.16 -10.99 -0.06 8.06 16 7 O -0.54 -10.10 15.80 5.56 0.09 -10.01 16 8 N -0.61 -8.68 3.24 -170.51 -0.55 -9.23 16 9 C 0.10 1.11 5.85 -3.06 -0.02 1.10 16 10 C -0.12 -1.66 6.28 -24.89 -0.16 -1.82 16 11 C -0.10 -1.61 2.66 -88.47 -0.24 -1.84 16 12 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 13 C 0.19 3.56 2.42 -67.93 -0.16 3.40 16 14 H 0.05 0.94 8.02 -51.93 -0.42 0.53 16 15 C -0.17 -3.09 9.27 37.16 0.34 -2.75 16 16 N -0.72 -17.21 4.97 -53.43 -0.27 -17.47 16 17 C -0.23 -6.29 9.93 -15.06 -0.15 -6.44 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 21 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.12 1.79 5.25 -2.53 -0.01 1.78 16 26 C -0.12 -1.32 5.53 -25.04 -0.14 -1.46 16 27 C -0.12 -0.94 6.91 -24.69 -0.17 -1.11 16 28 C -0.12 -0.85 6.83 -25.07 -0.17 -1.02 16 29 C -0.12 -0.93 6.24 -25.61 -0.16 -1.09 16 30 H 0.08 0.35 7.92 -51.93 -0.41 -0.06 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 2.08 7.87 -40.82 -0.32 1.76 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.68 4.93 -51.93 -0.26 0.43 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.14 7.99 -51.93 -0.41 0.73 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.04 0.61 7.23 -51.93 -0.38 0.24 16 41 H 0.38 9.74 7.80 -40.82 -0.32 9.42 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.07 1.28 7.99 -51.93 -0.41 0.86 16 44 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 45 H 0.09 1.28 6.78 -51.92 -0.35 0.93 16 46 H 0.08 1.01 6.54 -51.93 -0.34 0.67 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.08 0.43 7.44 -51.93 -0.39 0.04 16 52 H 0.08 0.70 7.67 -51.93 -0.40 0.30 16 LS Contribution 401.80 15.07 6.06 6.06 Total: -1.00 -34.62 401.80 -9.01 -43.62 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -9.02 Total: 8.93 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.95 Total: 2.65 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.23 Total: -59.74 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.17 Total: -18.48 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.62 -9.01 -43.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271540334.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.233 kcal (2) G-P(sol) polarization free energy of solvation -34.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds