Wall clock time and date at job start Sat Apr 11 2020 05:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21289 * 119.99484 * 2 1 4 4 N 1.34772 * 120.00502 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00233 * 174.84905 * 4 2 1 6 6 C 1.50700 * 110.01384 * 302.73446 * 5 4 2 7 7 O 1.21278 * 120.00049 * 141.65407 * 6 5 4 8 8 N 1.34778 * 120.00162 * 321.38148 * 6 5 4 9 9 C 1.47023 * 125.64673 * 355.34925 * 8 6 5 10 10 C 1.54335 * 107.26719 * 178.85058 * 9 8 6 11 11 C 1.55158 * 103.02060 * 338.14246 * 10 9 8 12 12 H 1.09006 * 111.00275 * 277.23421 * 11 10 9 13 13 C 1.52997 * 111.00896 * 153.37971 * 11 10 9 14 14 H 1.09006 * 109.46964 * 307.80521 * 13 11 10 15 15 C 1.52996 * 109.47315 * 187.80263 * 13 11 10 16 16 N 1.46502 * 109.47105 * 67.79925 * 13 11 10 17 17 C 1.36938 * 120.00096 * 204.99895 * 16 13 11 18 18 H 1.07990 * 119.99814 * 0.02562 * 17 16 13 19 19 C 1.38814 * 119.99553 * 179.97438 * 17 16 13 20 20 N 1.31617 * 120.00297 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99684 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47004 * 90.00355 * 21 19 17 23 23 H 1.48499 * 109.46862 * 210.00467 * 21 19 17 24 24 H 1.48499 * 109.46875 * 330.00229 * 21 19 17 25 25 C 1.47426 * 125.65019 * 175.66105 * 8 6 5 26 26 C 1.54254 * 110.03617 * 64.12963 * 5 4 2 27 27 C 1.54966 * 104.16379 * 95.75609 * 26 5 4 28 28 C 1.54895 * 102.77342 * 37.88722 * 27 26 5 29 29 C 1.53880 * 110.02898 * 181.34946 * 5 4 2 30 30 H 1.08992 * 109.46690 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47539 * 300.00646 * 1 2 3 32 32 H 1.09007 * 109.46396 * 60.00693 * 1 2 3 33 33 H 0.96998 * 119.99350 * 354.84066 * 4 2 1 34 34 H 1.09003 * 109.88200 * 298.39517 * 9 8 6 35 35 H 1.08997 * 109.88726 * 59.55915 * 9 8 6 36 36 H 1.08996 * 110.85115 * 219.67157 * 10 9 8 37 37 H 1.09002 * 110.66881 * 96.52168 * 10 9 8 38 38 H 1.09003 * 109.47078 * 180.02562 * 15 13 11 39 39 H 1.08996 * 109.47265 * 299.99976 * 15 13 11 40 40 H 1.09003 * 109.47133 * 60.00242 * 15 13 11 41 41 H 0.97001 * 119.99648 * 25.00364 * 16 13 11 42 42 H 0.97001 * 120.00003 * 179.97438 * 20 19 17 43 43 H 1.08999 * 110.36525 * 322.92304 * 25 8 6 44 44 H 1.08996 * 110.36606 * 85.25120 * 25 8 6 45 45 H 1.09009 * 110.48589 * 214.40393 * 26 5 4 46 46 H 1.09000 * 110.48976 * 337.04635 * 26 5 4 47 47 H 1.09004 * 110.71765 * 279.57279 * 27 26 5 48 48 H 1.08994 * 110.92407 * 156.29642 * 27 26 5 49 49 H 1.09004 * 110.48134 * 203.40586 * 28 27 26 50 50 H 1.08994 * 110.59964 * 80.82145 * 28 27 26 51 51 H 1.08995 * 110.03203 * 359.94443 * 29 5 4 52 52 H 1.09000 * 110.02747 * 121.37900 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6416 -1.1696 -0.1134 6 6 4.0618 -0.4596 -1.3745 7 8 5.0476 0.2467 -1.3729 8 7 3.3452 -0.6140 -2.5055 9 6 2.1956 -1.5146 -2.6752 10 6 1.6813 -1.3339 -4.1191 11 6 2.2227 0.0666 -4.5103 12 1 1.5687 0.8559 -4.1393 13 6 2.4097 0.1791 -6.0246 14 1 3.0092 -0.6591 -6.3799 15 6 3.1225 1.4920 -6.3544 16 7 1.1003 0.1559 -6.6814 17 6 0.9931 -0.2644 -7.9803 18 1 1.8737 -0.5793 -8.5203 19 6 -0.2476 -0.2868 -8.6023 20 7 -1.3209 0.0964 -7.9439 21 14 -0.3940 -0.8610 -10.3739 22 1 -0.6307 -2.3267 -10.4013 23 1 -1.5303 -0.1636 -11.0279 24 1 0.8628 -0.5488 -11.1008 25 6 3.5883 0.0875 -3.7791 26 6 4.2687 -0.4798 1.1155 27 6 4.6136 -1.6492 2.0720 28 6 5.0962 -2.7551 1.1007 29 6 4.1669 -2.6160 -0.1227 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.6989 -2.0054 0.0764 34 1 2.5070 -2.5471 -2.5171 35 1 1.4096 -1.2499 -1.9680 36 1 0.5918 -1.3480 -4.1476 37 1 2.0927 -2.1028 -4.7731 38 1 3.2553 1.5723 -7.4333 39 1 2.5231 2.3301 -5.9991 40 1 4.0968 1.5092 -5.8658 41 1 0.3093 0.4385 -6.1962 42 1 -2.1879 0.0811 -8.3787 43 1 3.9029 1.1143 -3.5926 44 1 4.3405 -0.4402 -4.3653 45 1 5.1725 0.0591 0.8307 46 1 3.5513 0.1960 1.5812 47 1 3.7282 -1.9744 2.6184 48 1 5.4090 -1.3665 2.7615 49 1 4.9825 -3.7389 1.5562 50 1 6.1338 -2.5866 0.8129 51 1 3.3353 -3.3158 -0.0415 52 1 4.7259 -2.8042 -1.0394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271540334.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:11:33 Heat of formation + Delta-G solvation = -84.543514 kcal Electronic energy + Delta-G solvation = -31523.837920 eV Core-core repulsion = 27522.239720 eV Total energy + Delta-G solvation = -4001.598200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.27211 -40.25068 -39.36584 -38.06328 -36.84554 -34.91571 -34.13513 -32.08313 -31.00151 -30.84147 -29.86297 -28.96115 -28.31464 -26.27353 -24.83451 -22.85721 -22.51838 -22.23177 -21.17298 -21.08453 -20.12217 -19.13837 -18.49059 -17.85392 -17.52733 -17.07876 -16.79478 -16.53739 -15.95312 -15.89893 -15.54904 -15.30621 -14.84133 -14.81969 -14.64793 -14.28139 -14.08280 -14.02054 -13.87363 -13.63559 -13.44219 -13.26797 -13.18064 -12.94316 -12.90812 -12.77180 -12.69868 -12.34625 -12.33233 -12.18522 -12.13427 -11.98616 -11.94869 -11.70146 -11.58197 -11.57676 -11.43510 -11.17633 -10.91008 -10.89503 -10.07111 -9.64974 -8.98037 -7.90250 -5.17637 1.40693 1.49612 1.50580 1.58440 1.59664 1.90179 2.21671 2.58563 3.26183 3.42977 3.43448 3.51625 3.65015 3.71869 3.82090 3.91186 4.15331 4.21796 4.25374 4.33218 4.35567 4.40579 4.46109 4.49447 4.50500 4.56500 4.62098 4.64746 4.67814 4.71438 4.76912 4.84755 4.92330 4.93571 5.01151 5.05184 5.09225 5.13998 5.17519 5.19304 5.21669 5.29763 5.33803 5.42502 5.45822 5.53927 5.57140 6.31451 6.44550 6.54634 7.04842 7.23739 7.38671 8.12907 8.37977 9.32981 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.002831 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.093829 B = 9886.782869 C =10247.776493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.503 3.497 3 O -0.586 6.586 4 N -0.703 5.703 5 C 0.165 3.835 6 C 0.527 3.473 7 O -0.585 6.585 8 N -0.611 5.611 9 C 0.101 3.899 10 C -0.112 4.112 11 C -0.091 4.091 12 H 0.065 0.935 13 C 0.186 3.814 14 H 0.050 0.950 15 C -0.161 4.161 16 N -0.729 5.729 17 C -0.232 4.232 18 H 0.073 0.927 19 C -0.072 4.072 20 N -0.967 5.967 21 Si 0.966 3.034 22 H -0.285 1.285 23 H -0.299 1.299 24 H -0.275 1.275 25 C 0.120 3.880 26 C -0.119 4.119 27 C -0.113 4.113 28 C -0.118 4.118 29 C -0.114 4.114 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.425 0.575 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.102 0.898 50 H 0.060 0.940 51 H 0.120 0.880 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.463 -11.526 22.780 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.292 3.708 3 O -0.465 6.465 4 N -0.361 5.361 5 C 0.075 3.925 6 C 0.316 3.684 7 O -0.464 6.464 8 N -0.343 5.343 9 C -0.021 4.021 10 C -0.150 4.150 11 C -0.111 4.111 12 H 0.083 0.917 13 C 0.077 3.923 14 H 0.068 0.932 15 C -0.221 4.221 16 N -0.369 5.369 17 C -0.364 4.364 18 H 0.091 0.909 19 C -0.264 4.264 20 N -0.618 5.618 21 Si 0.796 3.204 22 H -0.212 1.212 23 H -0.226 1.226 24 H -0.200 1.200 25 C -0.004 4.004 26 C -0.158 4.158 27 C -0.151 4.151 28 C -0.155 4.155 29 C -0.152 4.152 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.266 0.734 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.106 0.894 48 H 0.094 0.906 49 H 0.121 0.879 50 H 0.078 0.922 51 H 0.138 0.862 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.491 -10.494 22.652 26.065 hybrid contribution -0.650 0.468 -1.340 1.562 sum 6.840 -10.025 21.312 24.526 Atomic orbital electron populations 1.21932 0.88163 1.06948 1.05618 1.21618 0.92235 0.83064 0.73848 1.90784 1.71822 1.33459 1.50485 1.46304 1.05210 1.09882 1.74713 1.21093 0.82091 0.98179 0.91131 1.21030 0.82034 0.80785 0.84599 1.90638 1.28892 1.41574 1.85343 1.48522 1.32168 1.43021 1.10592 1.22488 0.87847 0.94335 0.97428 1.22541 1.01640 0.95970 0.94840 1.22389 0.95253 0.98480 0.94943 0.91687 1.20254 0.86997 0.95473 0.89603 0.93159 1.22383 0.99705 0.99332 1.00661 1.42490 1.04323 1.78590 1.11457 1.19543 0.93098 1.33977 0.89823 0.90928 1.25427 0.95540 1.03602 1.01854 1.69798 0.98322 1.55873 1.37790 0.85252 0.76835 0.77615 0.80731 1.21243 1.22625 1.19976 1.22111 0.97334 0.96691 0.84223 1.22602 1.00290 0.98690 0.94250 1.22509 1.02027 0.93642 0.96879 1.22362 0.98589 1.00308 0.94259 1.22459 1.01533 0.90810 1.00436 0.86552 0.87787 0.89281 0.73428 0.88523 0.89768 0.90062 0.90586 0.94156 0.94386 0.92041 0.79493 0.94166 0.92919 0.90907 0.92363 0.92143 0.89429 0.90647 0.87930 0.92154 0.86171 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.13 71.24 0.72 -1.38 16 2 C 0.50 10.52 5.67 87.66 0.50 11.02 16 3 O -0.59 -19.58 14.84 -3.06 -0.05 -19.62 16 4 N -0.70 -10.22 2.95 -423.03 -1.25 -11.47 16 5 C 0.17 3.32 0.55 3.58 0.00 3.32 16 6 C 0.53 15.97 5.16 87.66 0.45 16.42 16 7 O -0.59 -23.22 15.80 -3.02 -0.05 -23.27 16 8 N -0.61 -16.96 3.24 -811.77 -2.63 -19.59 16 9 C 0.10 2.06 5.85 86.73 0.51 2.57 16 10 C -0.11 -2.99 6.28 31.79 0.20 -2.79 16 11 C -0.09 -2.92 2.66 -9.40 -0.02 -2.95 16 12 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 13 C 0.19 7.09 2.42 44.99 0.11 7.20 16 14 H 0.05 1.92 8.02 -2.38 -0.02 1.91 16 15 C -0.16 -5.98 9.27 71.98 0.67 -5.31 16 16 N -0.73 -34.97 4.97 -322.95 -1.61 -36.58 16 17 C -0.23 -12.42 9.93 84.03 0.83 -11.59 16 18 H 0.07 3.77 7.83 -2.92 -0.02 3.75 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 20 N -0.97 -57.28 13.06 21.65 0.28 -57.00 16 21 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 25 C 0.12 3.75 5.25 86.86 0.46 4.21 16 26 C -0.12 -2.71 5.53 31.69 0.18 -2.53 16 27 C -0.11 -1.48 6.91 31.91 0.22 -1.26 16 28 C -0.12 -1.26 6.83 31.67 0.22 -1.04 16 29 C -0.11 -1.39 6.24 31.32 0.20 -1.19 16 30 H 0.12 0.53 7.92 -2.39 -0.02 0.51 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.42 2.29 7.87 -92.71 -0.73 1.56 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.45 4.93 -2.39 -0.01 1.44 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.08 2.08 7.99 -2.39 -0.02 2.06 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.98 7.23 -2.39 -0.02 1.96 16 41 H 0.37 19.29 7.80 -92.71 -0.72 18.57 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.05 1.88 7.99 -2.39 -0.02 1.86 16 44 H 0.07 2.19 8.04 -2.39 -0.02 2.17 16 45 H 0.06 1.72 6.78 -2.38 -0.02 1.71 16 46 H 0.06 1.58 6.54 -2.39 -0.02 1.56 16 47 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 48 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 50 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.12 0.54 7.44 -2.39 -0.02 0.53 16 52 H 0.07 1.03 7.67 -2.39 -0.02 1.02 16 Total: -1.00 -79.86 401.80 1.90 -77.96 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: -0.53 Total: 31.24 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 5.70 Total: 11.15 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -5.20 Total: -124.64 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.09 Total: -42.89 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -79.86 1.90 -77.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271540334.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.582 kcal (2) G-P(sol) polarization free energy of solvation -79.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds