Wall clock time and date at job start Sat Apr 11 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.51269 * 120.85193 * 2 1 4 4 C 1.53227 * 108.53961 * 231.32956 * 3 2 1 5 5 C 1.52965 * 109.40282 * 305.37523 * 4 3 2 6 6 C 1.50698 * 109.41291 * 183.70673 * 5 4 3 7 7 O 1.21283 * 119.99848 * 337.15269 * 6 5 4 8 8 N 1.34777 * 120.00222 * 157.15753 * 6 5 4 9 9 C 1.46499 * 120.00092 * 185.67303 * 8 6 5 10 10 C 1.46497 * 120.00077 * 5.67594 * 8 6 5 11 11 H 1.09001 * 109.46690 * 357.34972 * 10 8 6 12 12 C 1.52993 * 109.47350 * 117.34407 * 10 8 6 13 13 C 1.52999 * 109.47030 * 237.34996 * 10 8 6 14 14 N 1.46897 * 109.47505 * 55.00084 * 13 10 8 15 15 C 1.46899 * 111.00136 * 179.97438 * 14 13 10 16 16 C 1.50697 * 109.47044 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99926 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99921 * 180.02562 * 16 15 14 19 19 C 1.37089 * 119.99830 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00626 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00205 * 179.97438 * 19 18 16 22 22 N 1.31421 * 119.99618 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00422 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47116 * 59.99947 * 23 21 19 25 25 H 1.48505 * 109.47061 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47089 * 299.99658 * 23 21 19 27 27 C 1.52954 * 109.81788 * 63.59648 * 5 4 3 28 28 C 1.51268 * 120.84533 * 179.97438 * 2 1 3 29 29 H 1.07998 * 119.99917 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00301 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.62043 * 111.61490 * 3 2 1 32 32 H 1.09003 * 109.62353 * 351.04580 * 3 2 1 33 33 H 1.08999 * 109.48332 * 185.39419 * 4 3 2 34 34 H 1.08998 * 109.48093 * 65.35180 * 4 3 2 35 35 H 1.08999 * 109.40869 * 303.56203 * 5 4 3 36 36 H 1.09002 * 109.47316 * 324.83098 * 9 8 6 37 37 H 1.09009 * 109.46722 * 84.82321 * 9 8 6 38 38 H 1.08994 * 109.47198 * 204.82295 * 9 8 6 39 39 H 1.09000 * 109.47140 * 60.00233 * 12 10 8 40 40 H 1.09000 * 109.47890 * 180.02562 * 12 10 8 41 41 H 1.09004 * 109.47467 * 300.00794 * 12 10 8 42 42 H 1.09006 * 109.47013 * 175.00031 * 13 10 8 43 43 H 1.09001 * 109.46775 * 294.99547 * 13 10 8 44 44 H 1.00898 * 110.99621 * 303.95285 * 14 13 10 45 45 H 1.08998 * 109.47041 * 300.00151 * 15 14 13 46 46 H 1.09008 * 109.46992 * 59.99897 * 15 14 13 47 47 H 0.97003 * 119.99781 * 0.02562 * 18 16 15 48 48 H 0.96999 * 120.00108 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.48330 * 56.38175 * 27 5 4 50 50 H 1.09002 * 109.47949 * 176.41994 * 27 5 4 51 51 H 1.09003 * 109.62201 * 248.38031 * 28 2 1 52 52 H 1.08997 * 109.62898 * 8.76622 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1148 1.2514 -1.1342 5 6 3.9810 -0.0003 -0.9827 6 6 5.0510 -0.0004 -2.0438 7 8 4.8935 0.6365 -3.0639 8 7 6.1830 -0.7083 -1.8594 9 6 7.2747 -0.6105 -2.8314 10 6 6.3217 -1.5755 -0.6869 11 1 5.4353 -1.4826 -0.0594 12 6 6.4743 -3.0281 -1.1421 13 6 7.5582 -1.1588 0.1122 14 7 7.4668 0.2686 0.4470 15 6 8.6394 0.7049 1.2167 16 6 8.5106 2.1711 1.5404 17 8 7.5374 2.7914 1.1671 18 7 9.4768 2.7931 2.2447 19 6 9.3594 4.1267 2.5397 20 1 8.4929 4.6791 2.2073 21 6 10.3552 4.7680 3.2663 22 7 11.4094 4.0957 3.6712 23 14 10.1956 6.5853 3.6675 24 1 8.9659 6.8090 4.4695 25 1 11.3814 7.0266 4.4451 26 1 10.1130 7.3653 2.4066 27 6 3.1148 -1.2518 -1.1339 28 6 2.0855 -1.2987 0.0006 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 2.5981 1.4189 0.9546 32 1 1.4027 2.1330 -0.1598 33 1 3.7467 2.1384 -1.0890 34 1 2.5977 1.2217 -2.0933 35 1 4.4476 -0.0007 0.0024 36 1 6.8602 -0.4951 -3.8329 37 1 7.8964 0.2527 -2.5939 38 1 7.8796 -1.5163 -2.7907 39 1 7.3607 -3.1211 -1.7696 40 1 6.5771 -3.6735 -0.2697 41 1 5.5934 -3.3250 -1.7114 42 1 7.6120 -1.7445 1.0299 43 1 8.4530 -1.3355 -0.4846 44 1 7.3509 0.8282 -0.3845 45 1 8.7004 0.1321 2.1420 46 1 9.5420 0.5411 0.6278 47 1 10.2553 2.2971 2.5429 48 1 12.1048 4.5434 4.1781 49 1 2.5976 -1.2223 -2.0930 50 1 3.7466 -2.1388 -1.0885 51 1 2.5980 -1.4186 0.9551 52 1 1.4021 -2.1334 -0.1555 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715350555.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:12:01 Heat of formation + Delta-G solvation = -88.924347 kcal Electronic energy + Delta-G solvation = -30515.317509 eV Core-core repulsion = 26513.529342 eV Total energy + Delta-G solvation = -4001.788167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59765 -40.15271 -38.95747 -38.14221 -36.13549 -35.38753 -33.84379 -33.27567 -32.24396 -32.02449 -29.01909 -28.96566 -26.80111 -26.62487 -24.62143 -23.94081 -23.08891 -22.18817 -21.09417 -19.96858 -19.82925 -19.16926 -18.37680 -17.96320 -17.13391 -16.89789 -16.43014 -16.41835 -15.96994 -15.74223 -15.67046 -15.36100 -15.23989 -15.06494 -14.58398 -14.49736 -14.33653 -14.09850 -13.82955 -13.64925 -13.52080 -13.27742 -13.23002 -13.06276 -12.96763 -12.92265 -12.77269 -12.62239 -12.46191 -12.44234 -12.21311 -12.13222 -12.02621 -11.85324 -11.52026 -11.49670 -11.11873 -10.70390 -10.37075 -10.02700 -9.88025 -9.70721 -9.32170 -8.48156 -5.96667 1.38010 1.39942 1.40122 1.50671 1.60165 2.01644 2.04709 2.27846 2.91331 3.19201 3.45875 3.50245 3.66414 3.75308 3.87970 4.09275 4.13225 4.17492 4.25030 4.27066 4.34759 4.35590 4.44673 4.46035 4.48506 4.55637 4.58806 4.64114 4.72445 4.75800 4.77606 4.83433 4.85504 4.92174 5.01235 5.02847 5.06285 5.15243 5.17053 5.21219 5.32242 5.38178 5.39300 5.57199 5.79139 5.87564 6.03004 6.09352 6.30604 6.37331 6.59237 7.11619 7.16596 7.55285 8.11350 8.69023 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011352 B = 0.002891 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.001901 B = 9682.726969 C =11066.777574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.132 4.132 3 C -0.085 4.085 4 C -0.093 4.093 5 C -0.101 4.101 6 C 0.518 3.482 7 O -0.588 6.588 8 N -0.606 5.606 9 C 0.081 3.919 10 C 0.129 3.871 11 H 0.108 0.892 12 C -0.155 4.155 13 C 0.045 3.955 14 N -0.680 5.680 15 C 0.066 3.934 16 C 0.435 3.565 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.272 1.272 25 H -0.268 1.268 26 H -0.274 1.274 27 C -0.096 4.096 28 C -0.079 4.079 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.036 0.964 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.044 0.956 44 H 0.335 0.665 45 H 0.112 0.888 46 H 0.063 0.937 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.059 0.941 50 H 0.090 0.910 51 H 0.084 0.916 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 -20.194 -6.778 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.132 4.132 3 C -0.122 4.122 4 C -0.131 4.131 5 C -0.122 4.122 6 C 0.308 3.692 7 O -0.469 6.469 8 N -0.338 5.338 9 C -0.061 4.061 10 C 0.026 3.974 11 H 0.126 0.874 12 C -0.214 4.214 13 C -0.084 4.084 14 N -0.312 5.312 15 C -0.067 4.067 16 C 0.223 3.777 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.197 1.197 25 H -0.193 1.193 26 H -0.199 1.199 27 C -0.134 4.134 28 C -0.116 4.116 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.124 0.876 43 H 0.062 0.938 44 H 0.154 0.846 45 H 0.130 0.870 46 H 0.081 0.919 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.108 0.892 51 H 0.102 0.898 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.187 -19.517 -6.889 24.541 hybrid contribution 1.400 1.422 -0.436 2.043 sum -11.786 -18.095 -7.325 22.804 Atomic orbital electron populations 1.23780 0.94709 1.02612 1.02077 1.22051 0.95500 0.95745 0.99916 1.20791 0.97160 0.95991 0.98237 1.21266 0.96747 0.96098 0.99009 1.21315 0.94427 0.98224 0.98208 1.21107 0.83341 0.77362 0.87382 1.90642 1.80258 1.44902 1.31063 1.48005 1.15698 1.44970 1.25105 1.21635 0.89475 1.02368 0.92646 1.21624 0.99915 0.90563 0.85331 0.87445 1.22123 1.03078 0.92904 1.03245 1.22552 0.97116 0.88126 1.00601 1.60070 1.39889 1.04375 1.26915 1.21545 0.93064 0.91484 1.00565 1.20976 0.83710 0.90648 0.82394 1.90507 1.33638 1.68789 1.58152 1.41914 1.20621 1.09745 1.48716 1.19598 1.06671 0.86447 1.33718 0.90615 1.25999 0.94558 1.04357 0.96167 1.69659 1.09696 1.38692 1.37971 0.85034 0.78070 0.77091 0.78433 1.19679 1.19276 1.19936 1.21513 0.96988 0.95345 0.99566 1.20828 0.97274 0.94722 0.98780 0.88516 0.86835 0.91141 0.90927 0.94142 0.92203 0.87944 0.91975 0.94555 0.87904 0.91539 0.88758 0.91524 0.87583 0.93760 0.84625 0.87041 0.91935 0.76926 0.91251 0.92204 0.89159 0.89758 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.17 13.99 67.79 0.95 -2.22 16 2 C -0.13 -2.47 5.35 -16.12 -0.09 -2.55 16 3 C -0.08 -1.95 6.03 30.10 0.18 -1.77 16 4 C -0.09 -2.57 4.65 30.66 0.14 -2.43 16 5 C -0.10 -2.43 1.56 -11.57 -0.02 -2.44 16 6 C 0.52 14.88 6.80 87.66 0.60 15.48 16 7 O -0.59 -21.87 15.77 -3.04 -0.05 -21.92 16 8 N -0.61 -13.58 1.86 -822.61 -1.53 -15.11 16 9 C 0.08 1.73 9.32 127.77 1.19 2.92 16 10 C 0.13 2.06 2.19 44.99 0.10 2.16 16 11 H 0.11 1.71 4.76 -2.39 -0.01 1.70 16 12 C -0.16 -1.45 9.14 71.98 0.66 -0.79 16 13 C 0.05 0.84 4.98 86.30 0.43 1.27 16 14 N -0.68 -20.24 6.12 -517.93 -3.17 -23.41 16 15 C 0.07 2.16 6.17 85.56 0.53 2.69 16 16 C 0.44 20.76 7.82 87.66 0.69 21.45 16 17 O -0.62 -35.26 15.78 -3.07 -0.05 -35.30 16 18 N -0.57 -29.48 5.29 -306.98 -1.62 -31.10 16 19 C -0.33 -19.25 9.68 84.04 0.81 -18.43 16 20 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 21 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 22 N -0.92 -49.67 13.05 21.66 0.28 -49.39 16 23 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 27 C -0.10 -1.64 4.89 30.66 0.15 -1.49 16 28 C -0.08 -1.16 6.03 30.11 0.18 -0.98 16 29 H 0.10 1.54 7.92 -2.91 -0.02 1.51 16 30 H 0.11 1.43 7.92 -2.91 -0.02 1.40 16 31 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.07 1.60 7.89 -2.39 -0.02 1.58 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.73 8.00 -2.39 -0.02 1.71 16 35 H 0.10 2.54 6.70 -2.39 -0.02 2.52 16 36 H 0.06 1.48 7.51 -2.39 -0.02 1.46 16 37 H 0.04 0.89 7.95 -2.38 -0.02 0.87 16 38 H 0.10 1.45 6.55 -2.39 -0.02 1.44 16 39 H 0.07 0.58 6.78 -2.39 -0.02 0.57 16 40 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.07 0.62 7.71 -2.38 -0.02 0.60 16 42 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.04 0.74 7.75 -2.39 -0.02 0.72 16 44 H 0.34 11.75 7.26 -89.70 -0.65 11.10 16 45 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 46 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 48 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 49 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.09 1.15 6.43 -2.39 -0.02 1.13 16 51 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.09 1.00 7.89 -2.39 -0.02 0.98 16 Total: -1.00 -75.07 410.36 2.40 -72.67 By element: Atomic # 1 Polarization: 45.81 SS G_CDS: -0.46 Total: 45.35 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 6.97 Total: 12.74 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -6.04 Total: -119.00 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -0.10 Total: -57.22 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -75.07 2.40 -72.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715350555.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.254 kcal (2) G-P(sol) polarization free energy of solvation -75.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds