Wall clock time and date at job start Sat Apr 11 2020 05:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46897 * 109.47438 * 175.00032 * 4 2 1 6 6 C 1.46902 * 111.00214 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47406 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99871 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00084 * 180.02562 * 7 6 5 10 10 C 1.37096 * 119.99678 * 179.97438 * 9 7 6 11 11 H 1.07995 * 120.00192 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99738 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99999 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99981 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47420 * 89.99242 * 14 12 10 16 16 H 1.48502 * 109.46715 * 209.99565 * 14 12 10 17 17 H 1.48503 * 109.47108 * 329.99095 * 14 12 10 18 18 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 19 19 C 1.46499 * 119.99936 * 299.99999 * 18 2 1 20 20 C 1.34777 * 120.00000 * 119.99453 * 18 2 1 21 21 O 1.21274 * 120.00145 * 0.02562 * 20 18 2 22 22 C 1.50696 * 119.99735 * 180.02562 * 20 18 2 23 23 C 1.52998 * 109.46973 * 180.02562 * 22 20 18 24 24 H 1.08996 * 109.64328 * 55.42042 * 23 22 20 25 25 C 1.53023 * 109.64239 * 294.99659 * 23 22 20 26 26 C 1.50069 * 110.14968 * 190.87806 * 25 23 22 27 27 C 1.29448 * 124.07487 * 17.13558 * 26 25 23 28 28 C 1.50071 * 124.07309 * 359.50793 * 27 26 25 29 29 C 1.53031 * 110.13965 * 17.16847 * 28 27 26 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 34 34 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 35 35 H 1.00902 * 110.99988 * 303.95181 * 5 4 2 36 36 H 1.09003 * 109.47036 * 300.00353 * 6 5 4 37 37 H 1.09003 * 109.47279 * 60.00093 * 6 5 4 38 38 H 0.96998 * 120.00157 * 359.97438 * 9 7 6 39 39 H 0.96999 * 119.99792 * 180.02562 * 13 12 10 40 40 H 1.09000 * 109.46842 * 89.99634 * 19 18 2 41 41 H 1.08994 * 109.47173 * 210.00167 * 19 18 2 42 42 H 1.08998 * 109.46730 * 330.00200 * 19 18 2 43 43 H 1.09002 * 109.47152 * 300.00044 * 22 20 18 44 44 H 1.09000 * 109.47333 * 60.00571 * 22 20 18 45 45 H 1.08996 * 109.35993 * 311.08970 * 25 23 22 46 46 H 1.08999 * 109.35438 * 70.81223 * 25 23 22 47 47 H 1.08001 * 117.96316 * 197.15945 * 26 25 23 48 48 H 1.07997 * 117.96098 * 179.53101 * 27 26 25 49 49 H 1.08999 * 109.35777 * 137.36212 * 28 27 26 50 50 H 1.08997 * 109.35300 * 257.08019 * 28 27 26 51 51 H 1.09007 * 109.63511 * 190.86437 * 29 28 27 52 52 H 1.09000 * 109.65977 * 70.22299 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5040 -0.8266 1.1903 6 6 4.0304 -1.5159 2.3760 7 6 5.5318 -1.6043 2.2806 8 8 6.1067 -1.1394 1.3192 9 7 6.2355 -2.2010 3.2631 10 6 7.6013 -2.2819 3.1760 11 1 8.1133 -1.8671 2.3203 12 6 8.3268 -2.8966 4.1891 13 7 9.6361 -2.9737 4.1059 14 14 7.4412 -3.6133 5.6695 15 1 7.0919 -5.0309 5.3988 16 1 8.3269 -3.5401 6.8592 17 1 6.2009 -2.8384 5.9272 18 7 2.0184 -0.6906 -1.1962 19 6 1.6645 -2.0931 -1.4281 20 6 2.7931 -0.0355 -2.0834 21 8 3.0864 1.1255 -1.8913 22 6 3.2950 -0.7457 -3.3141 23 6 4.1455 0.2158 -4.1466 24 1 4.9479 0.6222 -3.5309 25 6 3.2697 1.3568 -4.6690 26 6 4.0192 2.1557 -5.6947 27 6 5.0834 1.7393 -6.3026 28 6 5.7226 0.4035 -6.0589 29 6 4.7391 -0.5295 -5.3488 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.7517 -0.1584 2.1369 34 1 1.6055 -1.7198 1.2950 35 1 3.7996 -1.2883 0.3432 36 1 3.7557 -0.9589 3.2718 37 1 3.6096 -2.5200 2.4293 38 1 5.7756 -2.5732 4.0318 39 1 10.1425 -3.4031 4.8130 40 1 0.7376 -2.1442 -1.9994 41 1 2.4629 -2.5818 -1.9864 42 1 1.5295 -2.5968 -0.4710 43 1 3.9004 -1.6023 -3.0178 44 1 2.4470 -1.0878 -3.9074 45 1 2.3687 0.9426 -5.1213 46 1 2.9916 2.0074 -3.8399 47 1 3.6477 3.1395 -5.9407 48 1 5.5399 2.3940 -7.0302 49 1 6.0139 -0.0369 -7.0124 50 1 6.6074 0.5347 -5.4362 51 1 5.2635 -1.4210 -5.0046 52 1 3.9410 -0.8121 -6.0352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715353851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:12:12 Heat of formation + Delta-G solvation = -86.277897 kcal Electronic energy + Delta-G solvation = -29923.965319 eV Core-core repulsion = 25922.291910 eV Total energy + Delta-G solvation = -4001.673408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30949 -40.31467 -39.36822 -37.85312 -36.17215 -35.51612 -33.94459 -33.74853 -32.48965 -31.60713 -29.12162 -28.28514 -27.65721 -26.59933 -24.55790 -24.15354 -22.98452 -21.57737 -21.27869 -20.31194 -19.79463 -18.89857 -18.18600 -17.89261 -17.23991 -16.98844 -16.81805 -16.60693 -16.38831 -15.72540 -15.48637 -15.36492 -15.04151 -14.85259 -14.55463 -14.38840 -14.21429 -14.08232 -14.01700 -13.84002 -13.49906 -13.42925 -13.22057 -13.14646 -13.01435 -12.94493 -12.84248 -12.77454 -12.50768 -12.43228 -12.34729 -11.99231 -11.86251 -11.63761 -11.52878 -11.45796 -11.02156 -10.53916 -10.47932 -10.26839 -9.84793 -9.60489 -9.25291 -8.42613 -6.04055 1.29412 1.34707 1.42142 1.44235 1.76182 1.93603 2.09853 2.22261 2.70950 3.13577 3.36662 3.62333 3.73088 3.82513 3.95107 4.08081 4.12520 4.22603 4.24185 4.29150 4.34392 4.39221 4.40865 4.47969 4.53282 4.55581 4.66084 4.69880 4.70984 4.75439 4.76842 4.82120 4.84661 4.92121 5.00461 5.03114 5.07415 5.15959 5.24019 5.29186 5.38313 5.50096 5.51265 5.70049 5.79723 5.89256 6.05894 6.08762 6.34475 6.49244 6.58446 6.86441 7.33163 7.37686 7.95145 8.75305 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.002723 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.478393 B =10279.066971 C =12209.025720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.135 3.865 3 H 0.069 0.931 4 C 0.053 3.947 5 N -0.691 5.691 6 C 0.063 3.937 7 C 0.445 3.555 8 O -0.616 6.616 9 N -0.589 5.589 10 C -0.330 4.330 11 H 0.051 0.949 12 C -0.016 4.016 13 N -0.935 5.935 14 Si 0.968 3.032 15 H -0.254 1.254 16 H -0.275 1.275 17 H -0.231 1.231 18 N -0.612 5.612 19 C 0.066 3.934 20 C 0.506 3.494 21 O -0.577 6.577 22 C -0.127 4.127 23 C -0.073 4.073 24 H 0.040 0.960 25 C -0.085 4.085 26 C -0.165 4.165 27 C -0.165 4.165 28 C -0.096 4.096 29 C -0.110 4.110 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.340 0.660 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.390 0.610 39 H 0.280 0.720 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.123 0.877 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.104 0.896 48 H 0.111 0.889 49 H 0.089 0.911 50 H 0.061 0.939 51 H 0.072 0.928 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.949 -1.380 -13.701 28.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.088 0.912 4 C -0.076 4.076 5 N -0.324 5.324 6 C -0.069 4.069 7 C 0.233 3.767 8 O -0.501 6.501 9 N -0.231 5.231 10 C -0.459 4.459 11 H 0.070 0.930 12 C -0.214 4.214 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.178 1.178 16 H -0.201 1.201 17 H -0.155 1.155 18 N -0.345 5.345 19 C -0.076 4.076 20 C 0.296 3.704 21 O -0.457 6.457 22 C -0.167 4.167 23 C -0.092 4.092 24 H 0.059 0.941 25 C -0.121 4.121 26 C -0.183 4.183 27 C -0.183 4.183 28 C -0.133 4.133 29 C -0.147 4.147 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.159 0.841 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.226 0.774 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.120 0.880 44 H 0.141 0.859 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.122 0.878 48 H 0.129 0.871 49 H 0.108 0.892 50 H 0.079 0.921 51 H 0.091 0.909 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.125 0.097 -13.900 27.843 hybrid contribution 0.489 -0.799 0.768 1.211 sum -23.636 -0.702 -13.132 27.048 Atomic orbital electron populations 1.21987 0.91901 1.03574 1.02892 1.21102 0.95294 0.97027 0.83457 0.91224 1.22434 0.85942 1.00538 0.98687 1.59953 1.10789 1.57621 1.04035 1.21641 0.89262 0.99753 0.96234 1.21063 0.90939 0.81256 0.83401 1.90563 1.73000 1.51540 1.34984 1.42012 1.06118 1.53776 1.21203 1.18992 0.81994 1.37459 1.07501 0.93037 1.26162 0.96206 0.97272 1.01803 1.69814 1.07555 1.44289 1.35901 0.85329 0.79396 0.79783 0.76773 1.17788 1.20055 1.15471 1.48000 1.50690 1.13520 1.22324 1.22054 1.02336 0.79761 1.03413 1.21226 0.77264 0.86729 0.85185 1.90657 1.58394 1.19374 1.77229 1.21801 1.01990 0.99236 0.93663 1.20920 0.97170 0.95279 0.95871 0.94115 1.20525 0.97971 0.96694 0.96955 1.22209 0.98076 0.99981 0.98022 1.22227 0.97266 0.98296 1.00489 1.20510 0.98120 0.93408 1.01249 1.21654 0.99154 0.97778 0.96113 0.90206 0.90323 0.92688 0.88904 0.92339 0.84133 0.86936 0.90036 0.77387 0.91096 0.90055 0.90124 0.90238 0.87964 0.85884 0.90010 0.91979 0.87751 0.87140 0.89250 0.92052 0.90887 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.19 71.98 0.66 -1.25 16 2 C 0.13 2.83 2.95 44.99 0.13 2.96 16 3 H 0.07 2.05 6.90 -2.39 -0.02 2.03 16 4 C 0.05 1.09 4.98 86.30 0.43 1.51 16 5 N -0.69 -21.61 6.12 -517.93 -3.17 -24.78 16 6 C 0.06 1.97 6.17 85.56 0.53 2.49 16 7 C 0.45 20.78 7.82 87.66 0.69 21.46 16 8 O -0.62 -35.92 15.78 -3.06 -0.05 -35.96 16 9 N -0.59 -28.28 5.09 -306.98 -1.56 -29.84 16 10 C -0.33 -19.74 10.16 84.04 0.85 -18.89 16 11 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 12 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 13 N -0.94 -57.07 13.96 21.67 0.30 -56.77 16 14 Si 0.97 38.83 27.74 68.60 1.90 40.73 16 15 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 16 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 18 N -0.61 -12.43 1.83 -822.63 -1.51 -13.94 16 19 C 0.07 0.77 9.28 127.77 1.19 1.96 16 20 C 0.51 13.42 7.43 87.66 0.65 14.07 16 21 O -0.58 -21.03 13.36 -3.01 -0.04 -21.07 16 22 C -0.13 -2.49 3.73 29.85 0.11 -2.38 16 23 C -0.07 -1.72 1.88 -10.65 -0.02 -1.74 16 24 H 0.04 1.30 7.96 -2.39 -0.02 1.28 16 25 C -0.08 -1.96 5.03 29.66 0.15 -1.81 16 26 C -0.16 -3.63 9.80 27.03 0.27 -3.36 16 27 C -0.16 -3.36 9.80 27.03 0.27 -3.09 16 28 C -0.10 -1.83 6.12 29.66 0.18 -1.65 16 29 C -0.11 -1.98 5.31 30.74 0.16 -1.81 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.71 7.67 -2.39 -0.02 0.70 16 32 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 0.87 6.88 -2.39 -0.02 0.86 16 35 H 0.34 11.60 7.56 -89.69 -0.68 10.93 16 36 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.39 15.31 5.76 -92.71 -0.53 14.78 16 39 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.08 0.86 6.44 -2.39 -0.02 0.84 16 42 H 0.08 0.80 6.53 -2.39 -0.02 0.79 16 43 H 0.10 1.86 7.40 -2.39 -0.02 1.84 16 44 H 0.12 1.53 8.08 -2.39 -0.02 1.51 16 45 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 46 H 0.06 1.81 6.22 -2.39 -0.01 1.80 16 47 H 0.10 2.10 8.06 -2.91 -0.02 2.07 16 48 H 0.11 1.93 8.06 -2.91 -0.02 1.91 16 49 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.07 1.23 8.14 -2.38 -0.02 1.22 16 52 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 Total: -1.00 -87.01 408.45 2.23 -84.78 By element: Atomic # 1 Polarization: 49.16 SS G_CDS: -0.35 Total: 48.81 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.71 Total: 8.05 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -5.94 Total: -125.33 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.09 Total: -57.04 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.90 Total: 40.73 kcal Total: -87.01 2.23 -84.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715353851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.502 kcal (2) G-P(sol) polarization free energy of solvation -87.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds