Wall clock time and date at job start Sat Apr 11 2020 05:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00172 * 2 1 4 4 C 1.50699 * 109.47476 * 66.04358 * 3 2 1 5 5 O 1.21296 * 119.99395 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00711 * 180.02562 * 4 3 2 7 7 C 1.37091 * 120.00224 * 180.02562 * 6 4 3 8 8 H 1.08002 * 120.00586 * 359.97438 * 7 6 4 9 9 C 1.38958 * 120.00076 * 179.97438 * 7 6 4 10 10 N 1.31412 * 119.99453 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00100 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47327 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46802 * 120.00228 * 11 9 7 14 14 H 1.48497 * 109.47302 * 240.00111 * 11 9 7 15 15 C 1.46898 * 111.00289 * 236.04281 * 2 1 3 16 16 C 1.53037 * 109.46379 * 298.95708 * 15 2 1 17 17 C 1.53185 * 109.31560 * 181.36987 * 16 15 2 18 18 N 1.46925 * 108.77821 * 305.36131 * 17 16 15 19 19 C 1.34775 * 120.63717 * 233.58883 * 18 17 16 20 20 O 1.21280 * 119.99487 * 359.97438 * 19 18 17 21 21 C 1.50696 * 120.00203 * 180.02562 * 19 18 17 22 22 C 1.54894 * 110.48422 * 63.24037 * 21 19 18 23 23 C 1.55238 * 102.58338 * 156.67616 * 22 21 19 24 24 C 1.54266 * 104.23333 * 322.08174 * 23 22 21 25 25 C 1.53869 * 106.59800 * 23.61579 * 24 23 22 26 26 C 1.46932 * 118.73449 * 53.85991 * 18 17 16 27 27 C 1.53048 * 109.44686 * 59.01745 * 15 2 1 28 28 H 1.08996 * 109.46754 * 183.94956 * 1 2 3 29 29 H 1.08991 * 109.47293 * 303.95657 * 1 2 3 30 30 H 1.09001 * 109.47044 * 63.95548 * 1 2 3 31 31 H 1.08997 * 109.47559 * 186.04386 * 3 2 1 32 32 H 1.09005 * 109.47494 * 306.04448 * 3 2 1 33 33 H 0.96999 * 119.99410 * 359.97438 * 6 4 3 34 34 H 0.97003 * 119.99581 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.46112 * 178.98246 * 15 2 1 36 36 H 1.09005 * 109.49785 * 61.41519 * 16 15 2 37 37 H 1.09006 * 109.52112 * 301.34304 * 16 15 2 38 38 H 1.09009 * 109.58560 * 185.57606 * 17 16 15 39 39 H 1.08999 * 109.70728 * 65.22511 * 17 16 15 40 40 H 1.09002 * 110.43350 * 300.69816 * 21 19 18 41 41 H 1.08996 * 110.75388 * 275.05970 * 22 21 19 42 42 H 1.08993 * 110.76071 * 38.44196 * 22 21 19 43 43 H 1.09005 * 110.46917 * 203.39204 * 23 22 21 44 44 H 1.09007 * 110.58541 * 80.83124 * 23 22 21 45 45 H 1.08999 * 110.03060 * 264.32313 * 24 23 22 46 46 H 1.09006 * 110.06829 * 142.91691 * 24 23 22 47 47 H 1.09001 * 110.02983 * 240.71432 * 25 24 23 48 48 H 1.08996 * 110.07773 * 119.30576 * 25 24 23 49 49 H 1.09003 * 109.58329 * 65.92978 * 26 18 17 50 50 H 1.08997 * 109.58700 * 186.34887 * 26 18 17 51 51 H 1.09000 * 109.49649 * 298.56969 * 27 15 2 52 52 H 1.08998 * 109.49696 * 58.64005 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0046 1.4456 2.1407 6 7 2.0180 3.3202 1.5233 7 6 1.6923 3.9347 2.7047 8 1 1.1299 3.3989 3.4551 9 6 2.0856 5.2471 2.9368 10 7 2.7703 5.8989 2.0239 11 14 1.6412 6.0846 4.5462 12 1 0.8740 5.1420 5.3994 13 1 2.8829 6.4917 5.2517 14 1 0.8140 7.2859 4.2672 15 6 1.9955 -0.7660 -1.1375 16 6 1.5261 -2.2190 -1.0348 17 6 2.1050 -3.0223 -2.2037 18 7 1.7388 -2.3575 -3.4617 19 6 1.1178 -3.0402 -4.4439 20 8 0.8564 -4.2150 -4.2940 21 6 0.7493 -2.3442 -5.7287 22 6 2.0218 -1.8586 -6.4664 23 6 1.5398 -1.7526 -7.9382 24 6 0.5965 -2.9603 -8.1163 25 6 0.0939 -3.3364 -6.7115 26 6 2.0680 -0.9355 -3.6311 27 6 1.4846 -0.1542 -2.4440 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8523 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5612 1.9274 -0.8309 33 1 2.5234 3.8013 0.8495 34 1 3.0446 6.8151 2.1858 35 1 3.0850 -0.7345 -1.1234 36 1 0.4373 -2.2532 -1.0737 37 1 1.8701 -2.6472 -0.0933 38 1 1.6951 -4.0323 -2.1914 39 1 3.1905 -3.0675 -2.1167 40 1 0.0807 -1.5066 -5.5296 41 1 2.3388 -0.8860 -6.0902 42 1 2.8245 -2.5901 -6.3744 43 1 2.3853 -1.8248 -8.6224 44 1 0.9993 -0.8196 -8.0983 45 1 1.1401 -3.7971 -8.5550 46 1 -0.2449 -2.6870 -8.7532 47 1 0.3936 -4.3557 -6.4683 48 1 -0.9913 -3.2455 -6.6656 49 1 3.1507 -0.8117 -3.6570 50 1 1.6339 -0.5682 -4.5610 51 1 0.3962 -0.2079 -2.4697 52 1 1.7991 0.8876 -2.5053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725415524.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:12:50 Heat of formation + Delta-G solvation = -71.423334 kcal Electronic energy + Delta-G solvation = -30096.342919 eV Core-core repulsion = 26095.313653 eV Total energy + Delta-G solvation = -4001.029266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85696 -39.22187 -37.96846 -37.25904 -35.68312 -33.88786 -32.06582 -31.25023 -31.05816 -29.43906 -29.02113 -27.87276 -26.02157 -24.75410 -23.58946 -23.20809 -21.55383 -20.90219 -19.85854 -19.11402 -18.91494 -17.84157 -17.71523 -16.46478 -16.18890 -16.02190 -15.35712 -15.21268 -14.83067 -14.75044 -14.66318 -14.21040 -14.01854 -13.93535 -13.78299 -13.57434 -13.50320 -13.09182 -12.63941 -12.43652 -12.36526 -12.12299 -11.93287 -11.62373 -11.59638 -11.50849 -11.41965 -11.38959 -11.23151 -11.19868 -11.15887 -10.93851 -10.85352 -10.72494 -10.44733 -10.35163 -10.22986 -9.88185 -9.49315 -8.89277 -8.44568 -7.98116 -7.80944 -6.42961 -3.83441 2.40936 2.74335 3.15298 3.26016 3.33201 3.89296 3.95065 4.03763 4.14514 4.22898 4.30824 4.46791 4.64240 4.75104 4.79156 4.96072 4.98923 5.03749 5.08541 5.09330 5.12231 5.16798 5.21832 5.24282 5.27784 5.34527 5.43158 5.48422 5.52820 5.56438 5.65065 5.70505 5.72753 5.74158 5.78217 5.84885 5.87867 5.92562 5.97278 6.00621 6.07908 6.17844 6.27854 6.36146 6.57660 7.16260 7.28386 7.39975 7.54566 7.95977 8.05960 8.61091 9.17599 9.53759 10.05801 10.74902 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.002081 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.796038 B =13451.786423 C =14191.443934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.510 5.510 3 C 0.045 3.955 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.565 5.565 7 C -0.297 4.297 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.902 5.902 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.085 3.915 16 C -0.125 4.125 17 C 0.112 3.888 18 N -0.609 5.609 19 C 0.522 3.478 20 O -0.544 6.544 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.112 4.112 26 C 0.108 3.892 27 C -0.174 4.174 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.016 0.984 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.391 0.609 34 H 0.271 0.729 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.089 0.911 51 H 0.072 0.928 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 -13.421 -20.680 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.232 5.232 3 C -0.086 4.086 4 C 0.229 3.771 5 O -0.461 6.461 6 N -0.202 5.202 7 C -0.427 4.427 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.024 4.024 16 C -0.163 4.163 17 C -0.010 4.010 18 N -0.342 5.342 19 C 0.311 3.689 20 O -0.421 6.421 21 C -0.136 4.136 22 C -0.155 4.155 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.150 4.150 26 C -0.016 4.016 27 C -0.214 4.214 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.035 0.965 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.225 0.775 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.108 0.892 51 H 0.091 0.909 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.430 -14.489 -19.552 24.339 hybrid contribution -0.085 1.465 -0.336 1.506 sum -0.515 -13.024 -19.888 23.779 Atomic orbital electron populations 1.22588 0.87050 1.01993 1.01334 1.61821 1.08680 1.12733 1.39963 1.21867 1.00574 0.89156 0.97022 1.19761 0.85424 0.82909 0.88986 1.90490 1.43819 1.64645 1.47141 1.41873 1.49509 1.10779 1.18049 1.19743 1.32788 0.95419 0.94717 0.87882 1.25260 0.96869 0.96676 0.99228 1.69620 1.38191 1.12186 1.34394 0.85806 0.78208 0.79016 0.81364 1.19226 1.20763 1.20799 1.21764 0.99672 0.93357 0.87591 1.21972 1.01534 0.94478 0.98344 1.21636 0.99757 0.97518 0.82127 1.48135 1.58850 1.11039 1.16215 1.20564 0.76650 0.86884 0.84843 1.90666 1.54420 1.16283 1.80768 1.22165 0.99036 0.99599 0.92800 1.22727 0.96090 1.01552 0.95169 1.22420 0.99168 0.98603 0.95962 1.22149 0.99110 0.98087 0.96916 1.22064 1.00051 1.00001 0.92849 1.21987 1.00511 0.79892 0.99194 1.22783 1.02158 1.00330 0.96149 0.92079 0.88739 0.96540 0.89519 0.93422 0.77546 0.91959 0.89938 0.91291 0.89561 0.88901 0.91366 0.88222 0.90355 0.90909 0.91344 0.91264 0.91706 0.91684 0.89870 0.91506 0.90974 0.89243 0.90896 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.46 60.06 0.51 0.79 16 2 N -0.51 -8.05 4.49 -236.29 -1.06 -9.11 16 3 C 0.05 0.77 4.89 -4.98 -0.02 0.74 16 4 C 0.44 10.24 7.48 -10.99 -0.08 10.16 16 5 O -0.58 -15.32 13.91 5.54 0.08 -15.24 16 6 N -0.57 -14.07 5.29 -10.96 -0.06 -14.12 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 C 0.02 0.56 5.50 -17.46 -0.10 0.46 16 10 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 11 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 C 0.09 1.00 2.19 -67.67 -0.15 0.85 16 16 C -0.12 -1.38 5.11 -26.62 -0.14 -1.51 16 17 C 0.11 1.13 6.43 -3.71 -0.02 1.11 16 18 N -0.61 -5.93 2.97 -172.50 -0.51 -6.44 16 19 C 0.52 5.74 7.08 -10.99 -0.08 5.66 16 20 O -0.54 -7.90 14.85 5.56 0.08 -7.82 16 21 C -0.11 -0.92 2.30 -90.11 -0.21 -1.13 16 22 C -0.12 -0.75 5.51 -24.55 -0.14 -0.88 16 23 C -0.12 -0.69 6.84 -24.88 -0.17 -0.86 16 24 C -0.12 -0.79 6.80 -25.62 -0.17 -0.96 16 25 C -0.11 -0.91 6.17 -25.62 -0.16 -1.07 16 26 C 0.11 0.84 5.52 -3.48 -0.02 0.82 16 27 C -0.17 -1.70 4.67 -26.38 -0.12 -1.83 16 28 H 0.06 0.88 6.36 -51.93 -0.33 0.55 16 29 H 0.09 1.86 5.82 -51.93 -0.30 1.55 16 30 H 0.02 0.23 6.31 -51.93 -0.33 -0.09 16 31 H 0.09 1.33 8.00 -51.93 -0.42 0.92 16 32 H 0.05 0.73 6.90 -51.93 -0.36 0.38 16 33 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 36 H 0.07 0.83 6.50 -51.93 -0.34 0.49 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.05 7.01 -51.92 -0.36 0.68 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.71 7.69 -51.93 -0.40 0.31 16 41 H 0.08 0.40 6.12 -51.93 -0.32 0.09 16 42 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.85 6.88 -51.93 -0.36 0.49 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.09 0.56 4.36 -51.93 -0.23 0.33 16 51 H 0.07 0.79 6.47 -51.93 -0.34 0.45 16 52 H 0.08 0.77 6.68 -51.93 -0.35 0.42 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -32.27 389.72 -9.58 -41.85 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -8.47 Total: 8.66 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.21 Total: 4.01 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.91 Total: -53.22 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.16 Total: -23.06 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.27 -9.58 -41.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725415524.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.571 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds