Wall clock time and date at job start Sat Apr 11 2020 05:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34771 * 120.00129 * 2 1 4 4 O 1.21287 * 120.00306 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00075 * 359.97438 * 3 2 1 6 6 C 1.52995 * 109.47533 * 180.02562 * 5 3 2 7 7 C 1.54270 * 110.03209 * 292.16540 * 6 5 3 8 8 C 1.54883 * 104.19907 * 217.10658 * 7 6 5 9 9 C 1.54887 * 102.75147 * 37.93834 * 8 7 6 10 10 C 1.53869 * 110.03403 * 175.00032 * 6 5 3 11 11 C 1.46498 * 119.99833 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.64446 * 178.30554 * 11 2 1 13 13 C 1.54596 * 110.72673 * 301.45646 * 11 2 1 14 14 C 1.53996 * 105.13832 * 140.31752 * 13 11 2 15 15 N 1.47896 * 107.06035 * 1.22254 * 14 13 11 16 16 C 1.46894 * 111.00308 * 214.15572 * 15 14 13 17 17 C 1.50701 * 109.47383 * 176.64062 * 16 15 14 18 18 O 1.21289 * 119.99735 * 6.13807 * 17 16 15 19 19 N 1.34777 * 120.00128 * 185.86234 * 17 16 15 20 20 C 1.37096 * 120.00156 * 180.27020 * 19 17 16 21 21 H 1.08001 * 120.00037 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00107 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99734 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99854 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47251 * 90.00346 * 24 22 20 26 26 H 1.48504 * 109.47072 * 209.99744 * 24 22 20 27 27 H 1.48498 * 109.47375 * 329.99971 * 24 22 20 28 28 C 1.48529 * 105.81986 * 334.67491 * 15 14 13 29 29 H 1.09001 * 109.47510 * 269.99951 * 1 2 3 30 30 H 1.08996 * 109.47196 * 30.00528 * 1 2 3 31 31 H 1.09006 * 109.47231 * 150.00338 * 1 2 3 32 32 H 1.09003 * 109.47079 * 300.00286 * 5 3 2 33 33 H 1.08994 * 109.47318 * 60.00063 * 5 3 2 34 34 H 1.09001 * 110.01984 * 53.60451 * 6 5 3 35 35 H 1.09009 * 110.48178 * 335.78509 * 7 6 5 36 36 H 1.08998 * 110.48596 * 98.42051 * 7 6 5 37 37 H 1.09005 * 110.75490 * 279.62681 * 8 7 6 38 38 H 1.09000 * 110.75662 * 156.25675 * 8 7 6 39 39 H 1.08995 * 110.49288 * 203.37956 * 9 8 7 40 40 H 1.09002 * 110.48766 * 80.73377 * 9 8 7 41 41 H 1.09001 * 110.03434 * 238.56408 * 10 6 5 42 42 H 1.08995 * 110.03704 * 359.94701 * 10 6 5 43 43 H 1.09001 * 110.31030 * 21.39836 * 13 11 2 44 44 H 1.08998 * 110.39301 * 259.27045 * 13 11 2 45 45 H 1.08999 * 109.91414 * 241.86783 * 14 13 11 46 46 H 1.09001 * 109.91524 * 120.58078 * 14 13 11 47 47 H 1.09005 * 109.47121 * 56.63789 * 16 15 14 48 48 H 1.09003 * 109.47329 * 296.63852 * 16 15 14 49 49 H 0.97004 * 119.99626 * 0.27994 * 19 17 16 50 50 H 0.97010 * 120.00152 * 180.02562 * 23 22 20 51 51 H 1.09003 * 110.66708 * 157.64144 * 28 15 14 52 52 H 1.09006 * 110.66352 * 280.76623 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6352 -0.0011 7 6 3.1386 3.6821 1.3411 8 6 3.3013 5.1945 1.6329 9 6 1.9557 5.7840 1.1420 10 6 1.6275 4.9716 -0.1277 11 6 2.1974 -1.2687 0.0006 12 1 3.2726 -1.0918 -0.0297 13 6 1.8175 -2.1193 1.2344 14 6 1.7354 -3.5667 0.7151 15 7 2.0810 -3.5323 -0.7225 16 6 1.3172 -4.5387 -1.4718 17 6 1.6336 -4.4187 -2.9403 18 8 2.4989 -3.6552 -3.3138 19 7 0.9590 -5.1639 -3.8382 20 6 1.2507 -5.0588 -5.1736 21 1 2.0214 -4.3792 -5.5062 22 6 0.5549 -5.8267 -6.0993 23 7 -0.3832 -6.6532 -5.6947 24 14 0.9529 -5.6840 -7.9188 25 1 2.0108 -6.6643 -8.2725 26 1 -0.2682 -5.9643 -8.7161 27 1 1.4324 -4.3100 -8.2144 28 6 1.7510 -2.1601 -1.1855 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3634 -0.8901 -0.5138 32 1 0.7590 2.5298 -0.8908 33 1 0.7584 2.5302 0.8891 34 1 3.0840 3.5236 -0.8254 35 1 2.5544 3.2027 2.1267 36 1 4.1139 3.2050 1.2448 37 1 4.1346 5.6098 1.0661 38 1 3.4333 5.3699 2.7006 39 1 2.0677 6.8409 0.9003 40 1 1.1804 5.6441 1.8953 41 1 1.9674 5.5090 -1.0130 42 1 0.5543 4.7917 -0.1897 43 1 0.8517 -1.8034 1.6288 44 1 2.5851 -2.0364 2.0038 45 1 0.7236 -3.9508 0.8448 46 1 2.4456 -4.1949 1.2529 47 1 0.2507 -4.3761 -1.3155 48 1 1.5879 -5.5350 -1.1221 49 1 0.2670 -5.7744 -3.5394 50 1 -0.8688 -7.1896 -6.3409 51 1 2.3132 -1.9123 -2.0859 52 1 0.6797 -2.0602 -1.3599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732157247.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:13:18 Heat of formation + Delta-G solvation = -73.833217 kcal Electronic energy + Delta-G solvation = -29793.270696 eV Core-core repulsion = 25792.136929 eV Total energy + Delta-G solvation = -4001.133767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47013 -39.14212 -38.10854 -37.32765 -35.21618 -33.90964 -32.13053 -31.31572 -30.86507 -28.88994 -28.58152 -27.15715 -26.76814 -25.64768 -24.15208 -21.39911 -21.01352 -20.87696 -19.78517 -19.20178 -18.99596 -17.89113 -17.33396 -16.66497 -16.11172 -15.81228 -15.58097 -15.19538 -15.16711 -14.57157 -14.42709 -14.19272 -13.89952 -13.65872 -13.61228 -13.52964 -13.09295 -13.01513 -12.79956 -12.40427 -12.31474 -12.24502 -11.91542 -11.53907 -11.51883 -11.45054 -11.37490 -11.28120 -11.18056 -11.16021 -10.95945 -10.86486 -10.82932 -10.62922 -10.56455 -10.39837 -10.22747 -9.72784 -9.49661 -8.69903 -8.42517 -8.03821 -7.93555 -6.42878 -3.83527 2.58799 2.84811 3.17206 3.25929 3.31824 3.89106 4.06671 4.24481 4.29532 4.36826 4.44217 4.57896 4.75638 4.76910 4.88028 4.93951 5.00065 5.05235 5.12747 5.22339 5.23876 5.25239 5.27138 5.34631 5.38879 5.42142 5.44127 5.54408 5.56197 5.60331 5.67516 5.68176 5.77284 5.80639 5.83364 5.87570 5.90927 6.06819 6.07888 6.09674 6.16285 6.25867 6.27973 6.41755 6.57009 7.15181 7.22044 7.32254 7.54366 8.05141 8.14277 8.60609 9.17174 9.52920 10.04906 10.74827 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015539 B = 0.002235 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.460904 B =12522.693819 C =13638.305426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.609 5.609 3 C 0.513 3.487 4 O -0.534 6.534 5 C -0.132 4.132 6 C -0.078 4.078 7 C -0.113 4.113 8 C -0.128 4.128 9 C -0.124 4.124 10 C -0.122 4.122 11 C 0.135 3.865 12 H 0.115 0.885 13 C -0.139 4.139 14 C 0.035 3.965 15 N -0.491 5.491 16 C 0.039 3.961 17 C 0.441 3.559 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.033 3.967 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.047 0.953 48 H 0.092 0.908 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.110 0.890 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.824 17.835 17.199 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.342 5.342 3 C 0.302 3.698 4 O -0.410 6.410 5 C -0.172 4.172 6 C -0.097 4.097 7 C -0.150 4.150 8 C -0.165 4.165 9 C -0.162 4.162 10 C -0.160 4.160 11 C 0.031 3.969 12 H 0.133 0.867 13 C -0.178 4.178 14 C -0.093 4.093 15 N -0.216 5.216 16 C -0.093 4.093 17 C 0.227 3.773 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.095 4.095 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.099 0.901 47 H 0.065 0.935 48 H 0.110 0.890 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.128 0.872 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.177 18.089 16.733 24.670 hybrid contribution -1.513 -0.531 -0.633 1.723 sum -2.689 17.558 16.100 23.974 Atomic orbital electron populations 1.21818 0.79881 1.03726 1.01667 1.47827 1.06801 1.05941 1.73628 1.20735 0.88188 0.85256 0.75638 1.90693 1.13920 1.87234 1.49181 1.21889 0.99165 0.92149 1.03998 1.21560 0.96279 0.92424 0.99454 1.22382 1.01134 0.95591 0.95920 1.22532 0.97378 0.96032 1.00583 1.22355 0.97501 0.99062 0.97287 1.22237 1.00102 0.95396 0.98234 1.22068 0.98522 0.81902 0.94437 0.86738 1.22735 1.02016 0.94852 0.98168 1.22896 0.99772 0.96440 0.90234 1.64476 1.53018 1.03068 1.00999 1.22088 0.95594 0.97131 0.94491 1.19718 0.85763 0.85244 0.86608 1.90505 1.34506 1.40778 1.80266 1.41863 1.34239 1.37457 1.06493 1.19697 1.19140 1.22714 0.81195 0.87918 1.25260 0.95997 0.96067 1.00653 1.69613 1.23429 1.25677 1.35627 0.85860 0.77727 0.78913 0.81813 1.20365 1.20949 1.19430 1.23634 0.99334 0.87619 0.98904 0.92606 0.90817 0.90556 0.88930 0.89053 0.90086 0.92234 0.90753 0.91569 0.91860 0.91921 0.91827 0.91669 0.91708 0.91244 0.90715 0.93771 0.90148 0.93520 0.88989 0.77512 0.91890 0.87193 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 9.15 59.85 0.55 1.16 16 2 N -0.61 -7.25 2.88 -171.81 -0.50 -7.75 16 3 C 0.51 6.49 7.46 -10.99 -0.08 6.41 16 4 O -0.53 -8.71 14.20 5.55 0.08 -8.63 16 5 C -0.13 -1.16 3.38 -27.89 -0.09 -1.25 16 6 C -0.08 -0.72 2.55 -89.50 -0.23 -0.95 16 7 C -0.11 -1.07 5.43 -25.07 -0.14 -1.21 16 8 C -0.13 -0.99 6.91 -24.74 -0.17 -1.16 16 9 C -0.12 -0.85 6.83 -25.07 -0.17 -1.02 16 10 C -0.12 -0.89 6.46 -25.61 -0.17 -1.05 16 11 C 0.13 1.89 3.47 -66.07 -0.23 1.66 16 12 H 0.11 1.90 6.99 -51.93 -0.36 1.54 16 13 C -0.14 -1.59 6.55 -25.37 -0.17 -1.76 16 14 C 0.04 0.44 6.70 -2.76 -0.02 0.43 16 15 N -0.49 -8.33 5.11 -231.90 -1.18 -9.51 16 16 C 0.04 0.69 5.30 -4.98 -0.03 0.67 16 17 C 0.44 10.42 7.42 -10.98 -0.08 10.34 16 18 O -0.58 -15.63 13.87 5.55 0.08 -15.55 16 19 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 24 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.03 0.56 5.12 -1.90 -0.01 0.55 16 29 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 30 H 0.07 0.50 6.44 -51.93 -0.33 0.16 16 31 H 0.08 0.72 6.06 -51.93 -0.31 0.40 16 32 H 0.09 0.70 7.40 -51.93 -0.38 0.31 16 33 H 0.09 0.63 7.97 -51.93 -0.41 0.22 16 34 H 0.08 0.91 7.92 -51.93 -0.41 0.50 16 35 H 0.06 0.55 7.76 -51.92 -0.40 0.15 16 36 H 0.07 0.86 7.66 -51.93 -0.40 0.46 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 43 H 0.07 0.68 6.99 -51.93 -0.36 0.32 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.04 0.50 7.68 -51.93 -0.40 0.11 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.05 0.75 7.98 -51.93 -0.41 0.33 16 48 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 49 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 50 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.11 2.31 6.43 -51.93 -0.33 1.97 16 52 H 0.04 0.66 5.94 -51.93 -0.31 0.36 16 LS Contribution 400.47 15.07 6.03 6.03 Total: -1.00 -32.68 400.47 -9.98 -42.66 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -8.87 Total: 9.82 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -1.27 Total: 4.86 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -1.01 Total: -55.28 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.16 Total: -24.18 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.68 -9.98 -42.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732157247.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.169 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds