Wall clock time and date at job start Sat Apr 11 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99404 * 2 1 4 4 O 1.21284 * 119.99597 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00280 * 0.02562 * 3 2 1 6 6 C 1.53000 * 109.47274 * 179.97438 * 5 3 2 7 7 C 1.54265 * 110.03117 * 292.16759 * 6 5 3 8 8 C 1.54889 * 104.19531 * 217.10351 * 7 6 5 9 9 C 1.54893 * 102.74737 * 37.94186 * 8 7 6 10 10 C 1.53868 * 110.03289 * 175.00028 * 6 5 3 11 11 C 1.46496 * 120.00318 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.28668 * 179.29953 * 11 2 1 13 13 C 1.54257 * 110.32272 * 57.16962 * 11 2 1 14 14 C 1.54377 * 105.06382 * 241.00028 * 13 11 2 15 15 N 1.48567 * 104.59159 * 23.85582 * 14 13 11 16 16 C 1.46900 * 110.99718 * 200.95714 * 15 14 13 17 17 C 1.50696 * 109.47362 * 290.12389 * 16 15 14 18 18 O 1.21291 * 119.99966 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00112 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99886 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00583 * 0.02562 * 20 19 17 22 22 C 1.38958 * 119.99728 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99906 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99829 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47246 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47199 * 120.00365 * 24 22 20 27 27 H 1.48500 * 109.46781 * 240.00121 * 24 22 20 28 28 C 1.48720 * 104.28820 * 320.57327 * 15 14 13 29 29 H 1.08995 * 109.47582 * 269.99260 * 1 2 3 30 30 H 1.09000 * 109.47707 * 30.00314 * 1 2 3 31 31 H 1.09007 * 109.46636 * 150.00102 * 1 2 3 32 32 H 1.08997 * 109.46944 * 300.00010 * 5 3 2 33 33 H 1.09005 * 109.47158 * 59.99759 * 5 3 2 34 34 H 1.09005 * 110.01694 * 53.60680 * 6 5 3 35 35 H 1.09006 * 110.48667 * 335.78382 * 7 6 5 36 36 H 1.09001 * 110.48518 * 98.42504 * 7 6 5 37 37 H 1.08999 * 110.75639 * 279.62780 * 8 7 6 38 38 H 1.08999 * 110.91231 * 156.32901 * 8 7 6 39 39 H 1.09003 * 110.48544 * 203.37988 * 9 8 7 40 40 H 1.08997 * 110.59581 * 80.79394 * 9 8 7 41 41 H 1.09000 * 110.03276 * 238.56937 * 10 6 5 42 42 H 1.09002 * 110.03678 * 359.94703 * 10 6 5 43 43 H 1.08995 * 110.32672 * 359.90498 * 13 11 2 44 44 H 1.09013 * 110.32172 * 122.00604 * 13 11 2 45 45 H 1.08999 * 110.41555 * 142.63458 * 14 13 11 46 46 H 1.09004 * 110.41760 * 264.96131 * 14 13 11 47 47 H 1.08999 * 109.47382 * 50.12750 * 16 15 14 48 48 H 1.09006 * 109.46597 * 170.12515 * 16 15 14 49 49 H 0.97005 * 119.99864 * 0.02562 * 19 17 16 50 50 H 0.96999 * 119.99718 * 179.97438 * 23 22 20 51 51 H 1.09004 * 110.38960 * 280.64066 * 28 15 14 52 52 H 1.08996 * 110.50963 * 158.14509 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 6 2.3794 3.6353 0.0011 7 6 3.1384 3.6811 1.3433 8 6 3.3011 5.1933 1.6364 9 6 1.9554 5.7831 1.1461 10 6 1.6272 4.9718 -0.1243 11 6 2.1976 -1.2686 -0.0006 12 1 3.2719 -1.0847 -0.0130 13 6 1.7863 -2.1242 -1.2165 14 6 1.1873 -3.4139 -0.6154 15 7 0.7413 -3.0202 0.7460 16 6 0.6101 -4.1956 1.6173 17 6 -0.5665 -5.0240 1.1697 18 8 -1.2302 -4.6703 0.2182 19 7 -0.8806 -6.1585 1.8262 20 6 -1.9507 -6.9123 1.4186 21 1 -2.5418 -6.5974 0.5713 22 6 -2.2749 -8.0816 2.0958 23 7 -1.5560 -8.4645 3.1271 24 14 -3.7325 -9.1092 1.5401 25 1 -4.3720 -8.4661 0.3642 26 1 -3.2662 -10.4689 1.1674 27 1 -4.7177 -9.2098 2.6466 28 6 1.8120 -2.1110 1.2344 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5139 32 1 0.7583 2.5302 -0.8891 33 1 0.7589 2.5298 0.8908 34 1 3.0837 3.5245 -0.8234 35 1 2.5543 3.2009 2.1285 36 1 4.1138 3.2042 1.2464 37 1 4.1343 5.6091 1.0699 38 1 3.4346 5.3706 2.7035 39 1 2.0674 6.8403 0.9053 40 1 1.1791 5.6444 1.8985 41 1 1.9671 5.5099 -1.0091 42 1 0.5539 4.7919 -0.1865 43 1 1.0382 -1.6010 -1.8119 44 1 2.6586 -2.3588 -1.8267 45 1 0.3390 -3.7523 -1.2103 46 1 1.9458 -4.1946 -0.5579 47 1 1.5191 -4.7943 1.5591 48 1 0.4549 -3.8698 2.6459 49 1 -0.3495 -6.4415 2.5870 50 1 -1.7825 -9.2806 3.5999 51 1 2.6688 -2.6867 1.5844 52 1 1.4340 -1.4686 2.0297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732157249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:13:21 Heat of formation + Delta-G solvation = -75.833975 kcal Electronic energy + Delta-G solvation = -29666.008122 eV Core-core repulsion = 25664.787596 eV Total energy + Delta-G solvation = -4001.220526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50509 -39.10830 -38.11874 -37.34840 -35.05269 -33.87519 -32.14897 -31.32760 -30.85554 -28.91152 -28.68347 -27.07917 -26.64674 -25.54827 -24.15833 -21.41525 -21.11511 -20.91113 -19.79145 -19.18152 -18.93798 -17.88884 -17.30484 -16.67320 -16.03627 -15.88041 -15.58469 -15.30377 -15.11737 -14.65551 -14.50948 -14.08842 -13.84462 -13.77292 -13.58736 -13.34583 -13.13908 -12.86068 -12.42601 -12.32014 -12.22931 -11.97005 -11.88980 -11.75299 -11.54015 -11.47498 -11.45501 -11.32679 -11.19996 -11.13612 -10.98363 -10.89119 -10.84597 -10.66486 -10.65262 -10.35395 -10.23499 -9.73950 -9.51233 -8.74447 -8.47246 -8.04982 -7.95620 -6.42708 -3.83444 2.55774 2.92004 3.15174 3.25791 3.32687 3.89708 4.02880 4.24310 4.26651 4.34768 4.42482 4.56411 4.68084 4.78841 4.92379 5.00827 5.05365 5.15610 5.20055 5.21997 5.27769 5.32098 5.36459 5.38580 5.41781 5.43978 5.53060 5.54274 5.58517 5.65414 5.70036 5.77197 5.77574 5.79889 5.84545 5.85237 5.89565 6.01165 6.04837 6.09038 6.14394 6.24156 6.26147 6.40388 6.52540 7.06738 7.17567 7.37216 7.54289 8.05392 8.11588 8.60822 9.17329 9.53803 10.05423 10.75168 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.001893 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.383397 B =14788.684120 C =14946.159151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.603 5.603 3 C 0.512 3.488 4 O -0.545 6.545 5 C -0.133 4.133 6 C -0.077 4.077 7 C -0.113 4.113 8 C -0.128 4.128 9 C -0.125 4.125 10 C -0.122 4.122 11 C 0.138 3.862 12 H 0.104 0.896 13 C -0.134 4.134 14 C 0.037 3.963 15 N -0.482 5.482 16 C 0.034 3.966 17 C 0.446 3.554 18 O -0.578 6.578 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.020 3.980 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.039 0.961 47 H 0.050 0.950 48 H 0.088 0.912 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.051 0.949 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.572 23.231 -3.619 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.336 5.336 3 C 0.301 3.699 4 O -0.423 6.423 5 C -0.172 4.172 6 C -0.096 4.096 7 C -0.150 4.150 8 C -0.165 4.165 9 C -0.163 4.163 10 C -0.160 4.160 11 C 0.034 3.966 12 H 0.122 0.878 13 C -0.173 4.173 14 C -0.091 4.091 15 N -0.207 5.207 16 C -0.098 4.098 17 C 0.231 3.769 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.109 4.109 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.069 0.931 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.189 23.540 -4.147 25.267 hybrid contribution 0.225 -1.403 0.466 1.496 sum 8.414 22.137 -3.680 23.966 Atomic orbital electron populations 1.21814 0.78617 1.03427 1.02523 1.47927 1.07478 1.05321 1.72849 1.20758 0.88088 0.85443 0.75637 1.90660 1.14020 1.87429 1.50202 1.21885 0.99110 0.92079 1.04164 1.21545 0.96210 0.92506 0.99307 1.22379 1.01060 0.95574 0.96017 1.22527 0.97311 0.96030 1.00652 1.22356 0.97546 0.99019 0.97335 1.22236 1.00192 0.95386 0.98171 1.21790 0.97297 0.82835 0.94701 0.87755 1.22742 1.01046 0.96264 0.97240 1.23173 0.99678 0.95119 0.91139 1.65195 1.39671 1.13978 1.01812 1.22056 0.97938 0.91893 0.97863 1.19679 0.87597 0.83195 0.86395 1.90493 1.54226 1.71625 1.29889 1.41873 1.28509 1.20310 1.29548 1.19737 1.06093 1.02749 1.14122 0.87875 1.25265 0.99107 0.97706 0.95952 1.69621 1.39858 1.24762 1.20106 0.85806 0.80625 0.79271 0.78673 1.19236 1.20801 1.20764 1.23532 0.94077 0.95883 0.97390 0.92327 0.91803 0.89232 0.89020 0.88876 0.90330 0.92096 0.90860 0.91682 0.91817 0.91956 0.91711 0.91788 0.91637 0.90362 0.90903 0.88078 0.94238 0.93205 0.89371 0.77529 0.91944 0.93078 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 9.28 59.85 0.56 1.35 16 2 N -0.60 -6.82 2.74 -172.35 -0.47 -7.29 16 3 C 0.51 5.91 7.46 -10.99 -0.08 5.83 16 4 O -0.55 -7.94 14.18 5.55 0.08 -7.86 16 5 C -0.13 -1.10 3.38 -27.88 -0.09 -1.19 16 6 C -0.08 -0.65 2.55 -89.51 -0.23 -0.88 16 7 C -0.11 -1.02 5.43 -25.07 -0.14 -1.16 16 8 C -0.13 -0.95 6.91 -24.74 -0.17 -1.12 16 9 C -0.12 -0.82 6.83 -25.07 -0.17 -0.99 16 10 C -0.12 -0.82 6.46 -25.62 -0.17 -0.99 16 11 C 0.14 1.69 3.46 -66.55 -0.23 1.46 16 12 H 0.10 1.35 6.96 -51.93 -0.36 0.99 16 13 C -0.13 -1.64 6.17 -25.35 -0.16 -1.80 16 14 C 0.04 0.56 5.80 -2.18 -0.01 0.55 16 15 N -0.48 -7.60 4.72 -231.26 -1.09 -8.69 16 16 C 0.03 0.60 5.30 -4.98 -0.03 0.57 16 17 C 0.45 10.27 7.59 -10.99 -0.08 10.19 16 18 O -0.58 -15.08 14.42 5.55 0.08 -15.00 16 19 N -0.57 -14.14 5.29 -10.96 -0.06 -14.20 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 23 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 24 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 28 C 0.02 0.26 5.73 -2.09 -0.01 0.25 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.48 6.44 -51.93 -0.33 0.15 16 31 H 0.09 1.08 6.56 -51.93 -0.34 0.74 16 32 H 0.09 0.63 7.40 -51.93 -0.38 0.24 16 33 H 0.09 0.68 7.97 -51.93 -0.41 0.27 16 34 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 35 H 0.06 0.57 7.76 -51.93 -0.40 0.17 16 36 H 0.07 0.79 7.66 -51.93 -0.40 0.40 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 43 H 0.08 0.95 6.87 -51.93 -0.36 0.60 16 44 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 45 H 0.10 1.82 6.91 -51.93 -0.36 1.46 16 46 H 0.04 0.59 7.83 -51.93 -0.41 0.18 16 47 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 48 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 49 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 50 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 51 H 0.05 0.62 8.00 -51.93 -0.42 0.21 16 52 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 LS Contribution 403.16 15.07 6.08 6.08 Total: -1.00 -31.34 403.16 -9.97 -41.31 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -9.02 Total: 9.30 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.25 Total: 4.19 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.90 Total: -53.89 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.16 Total: -22.86 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.34 -9.97 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732157249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.524 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds