Wall clock time and date at job start Sat Apr 11 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99404 * 2 1 4 4 O 1.21284 * 119.99597 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00280 * 0.02562 * 3 2 1 6 6 C 1.53000 * 109.47274 * 179.97438 * 5 3 2 7 7 C 1.54265 * 110.03117 * 292.16759 * 6 5 3 8 8 C 1.54889 * 104.19531 * 217.10351 * 7 6 5 9 9 C 1.54893 * 102.74737 * 37.94186 * 8 7 6 10 10 C 1.53868 * 110.03289 * 175.00028 * 6 5 3 11 11 C 1.46496 * 120.00318 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.28668 * 179.29953 * 11 2 1 13 13 C 1.54257 * 110.32272 * 57.16962 * 11 2 1 14 14 C 1.54377 * 105.06382 * 241.00028 * 13 11 2 15 15 N 1.48567 * 104.59159 * 23.85582 * 14 13 11 16 16 C 1.46900 * 110.99718 * 200.95714 * 15 14 13 17 17 C 1.50696 * 109.47362 * 290.12389 * 16 15 14 18 18 O 1.21291 * 119.99966 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00112 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99886 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00583 * 0.02562 * 20 19 17 22 22 C 1.38958 * 119.99728 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99906 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99829 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47246 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47199 * 120.00365 * 24 22 20 27 27 H 1.48500 * 109.46781 * 240.00121 * 24 22 20 28 28 C 1.48720 * 104.28820 * 320.57327 * 15 14 13 29 29 H 1.08995 * 109.47582 * 269.99260 * 1 2 3 30 30 H 1.09000 * 109.47707 * 30.00314 * 1 2 3 31 31 H 1.09007 * 109.46636 * 150.00102 * 1 2 3 32 32 H 1.08997 * 109.46944 * 300.00010 * 5 3 2 33 33 H 1.09005 * 109.47158 * 59.99759 * 5 3 2 34 34 H 1.09005 * 110.01694 * 53.60680 * 6 5 3 35 35 H 1.09006 * 110.48667 * 335.78382 * 7 6 5 36 36 H 1.09001 * 110.48518 * 98.42504 * 7 6 5 37 37 H 1.08999 * 110.75639 * 279.62780 * 8 7 6 38 38 H 1.08999 * 110.91231 * 156.32901 * 8 7 6 39 39 H 1.09003 * 110.48544 * 203.37988 * 9 8 7 40 40 H 1.08997 * 110.59581 * 80.79394 * 9 8 7 41 41 H 1.09000 * 110.03276 * 238.56937 * 10 6 5 42 42 H 1.09002 * 110.03678 * 359.94703 * 10 6 5 43 43 H 1.08995 * 110.32672 * 359.90498 * 13 11 2 44 44 H 1.09013 * 110.32172 * 122.00604 * 13 11 2 45 45 H 1.08999 * 110.41555 * 142.63458 * 14 13 11 46 46 H 1.09004 * 110.41760 * 264.96131 * 14 13 11 47 47 H 1.08999 * 109.47382 * 50.12750 * 16 15 14 48 48 H 1.09006 * 109.46597 * 170.12515 * 16 15 14 49 49 H 0.97005 * 119.99864 * 0.02562 * 19 17 16 50 50 H 0.96999 * 119.99718 * 179.97438 * 23 22 20 51 51 H 1.09004 * 110.38960 * 280.64066 * 28 15 14 52 52 H 1.08996 * 110.50963 * 158.14509 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 6 2.3794 3.6353 0.0011 7 6 3.1384 3.6811 1.3433 8 6 3.3011 5.1933 1.6364 9 6 1.9554 5.7831 1.1461 10 6 1.6272 4.9718 -0.1243 11 6 2.1976 -1.2686 -0.0006 12 1 3.2719 -1.0847 -0.0130 13 6 1.7863 -2.1242 -1.2165 14 6 1.1873 -3.4139 -0.6154 15 7 0.7413 -3.0202 0.7460 16 6 0.6101 -4.1956 1.6173 17 6 -0.5665 -5.0240 1.1697 18 8 -1.2302 -4.6703 0.2182 19 7 -0.8806 -6.1585 1.8262 20 6 -1.9507 -6.9123 1.4186 21 1 -2.5418 -6.5974 0.5713 22 6 -2.2749 -8.0816 2.0958 23 7 -1.5560 -8.4645 3.1271 24 14 -3.7325 -9.1092 1.5401 25 1 -4.3720 -8.4661 0.3642 26 1 -3.2662 -10.4689 1.1674 27 1 -4.7177 -9.2098 2.6466 28 6 1.8120 -2.1110 1.2344 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5139 32 1 0.7583 2.5302 -0.8891 33 1 0.7589 2.5298 0.8908 34 1 3.0837 3.5245 -0.8234 35 1 2.5543 3.2009 2.1285 36 1 4.1138 3.2042 1.2464 37 1 4.1343 5.6091 1.0699 38 1 3.4346 5.3706 2.7035 39 1 2.0674 6.8403 0.9053 40 1 1.1791 5.6444 1.8985 41 1 1.9671 5.5099 -1.0091 42 1 0.5539 4.7919 -0.1865 43 1 1.0382 -1.6010 -1.8119 44 1 2.6586 -2.3588 -1.8267 45 1 0.3390 -3.7523 -1.2103 46 1 1.9458 -4.1946 -0.5579 47 1 1.5191 -4.7943 1.5591 48 1 0.4549 -3.8698 2.6459 49 1 -0.3495 -6.4415 2.5870 50 1 -1.7825 -9.2806 3.5999 51 1 2.6688 -2.6867 1.5844 52 1 1.4340 -1.4686 2.0297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732157249.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:13:21 Heat of formation + Delta-G solvation = -95.718307 kcal Electronic energy + Delta-G solvation = -29666.870372 eV Core-core repulsion = 25664.787596 eV Total energy + Delta-G solvation = -4002.082775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46054 -40.41312 -39.34847 -38.42074 -36.21452 -35.75628 -33.35802 -32.96233 -31.92404 -29.75776 -29.49234 -28.44398 -27.55869 -26.61696 -25.76519 -22.53960 -22.18904 -21.51444 -20.95389 -20.47731 -19.86554 -19.83156 -18.23526 -17.74260 -17.54272 -16.83698 -16.60991 -16.53448 -16.26405 -15.89636 -15.81827 -15.53715 -15.35862 -14.85073 -14.40601 -14.28127 -14.14631 -13.98070 -13.79686 -13.51846 -13.24322 -13.10180 -13.02893 -12.97704 -12.92014 -12.73860 -12.65082 -12.38947 -12.17267 -12.11434 -12.06149 -11.90620 -11.80180 -11.78804 -11.59211 -11.48735 -11.46671 -11.25115 -10.65968 -10.32285 -9.99457 -9.61756 -9.38791 -8.45774 -5.94022 1.36826 1.42037 1.56009 1.67379 2.04406 2.07119 2.28714 2.80143 3.21085 3.38782 3.48424 3.63952 3.74363 3.76891 3.82098 3.97374 4.13396 4.24610 4.29145 4.33694 4.38045 4.41850 4.45074 4.48290 4.52634 4.61727 4.64309 4.67321 4.73125 4.77244 4.77425 4.87582 4.89667 4.93237 4.99878 5.05470 5.11824 5.13757 5.14073 5.17632 5.29328 5.41106 5.42131 5.52427 5.57776 5.59445 5.82749 5.87615 6.07155 6.48802 6.61698 7.14377 7.22488 7.58113 8.13634 8.71978 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.001893 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.383397 B =14788.684120 C =14946.159151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.603 5.603 3 C 0.508 3.492 4 O -0.580 6.580 5 C -0.127 4.127 6 C -0.076 4.076 7 C -0.114 4.114 8 C -0.127 4.127 9 C -0.123 4.123 10 C -0.118 4.118 11 C 0.141 3.859 12 H 0.100 0.900 13 C -0.122 4.122 14 C 0.039 3.961 15 N -0.495 5.495 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.612 6.612 19 N -0.577 5.577 20 C -0.329 4.329 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.272 1.272 28 C 0.027 3.973 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.041 0.959 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.063 0.937 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 24.563 -3.374 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.299 3.701 4 O -0.460 6.460 5 C -0.166 4.166 6 C -0.095 4.095 7 C -0.151 4.151 8 C -0.165 4.165 9 C -0.160 4.160 10 C -0.155 4.155 11 C 0.036 3.964 12 H 0.118 0.882 13 C -0.161 4.161 14 C -0.089 4.089 15 N -0.219 5.219 16 C -0.086 4.086 17 C 0.232 3.768 18 O -0.498 6.498 19 N -0.214 5.214 20 C -0.458 4.458 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.197 1.197 28 C -0.101 4.101 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.126 0.874 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.081 0.919 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.791 24.884 -3.888 26.363 hybrid contribution 0.398 -1.785 0.377 1.867 sum 8.189 23.099 -3.511 24.758 Atomic orbital electron populations 1.21846 0.77711 1.03850 1.02668 1.47999 1.07956 1.05012 1.72537 1.21345 0.87836 0.86309 0.74620 1.90652 1.15669 1.87906 1.51777 1.21936 0.98970 0.89853 1.05875 1.21518 0.96125 0.93783 0.98095 1.22339 0.99769 0.96545 0.96475 1.22528 0.98092 0.94829 1.01019 1.22363 0.96865 0.99490 0.97321 1.22216 1.00741 0.94147 0.98441 1.21676 0.97175 0.83291 0.94217 0.88198 1.22643 1.01389 0.94723 0.97297 1.23054 0.98431 0.96627 0.90804 1.65140 1.41449 1.13511 1.01848 1.21919 0.95796 0.91996 0.98840 1.20659 0.88264 0.82637 0.85202 1.90473 1.55755 1.72288 1.31242 1.41945 1.28396 1.21020 1.30073 1.19686 1.07465 1.04229 1.14453 0.90220 1.26035 1.01436 0.98188 0.95795 1.69683 1.40876 1.25242 1.20544 0.84876 0.77542 0.77737 0.78217 1.19706 1.19769 1.19699 1.23524 0.93532 0.95380 0.97699 0.92289 0.88844 0.91344 0.86878 0.87252 0.92194 0.92400 0.93422 0.91822 0.91384 0.90963 0.91171 0.91374 0.90205 0.90303 0.89425 0.91455 0.94058 0.91386 0.87428 0.77147 0.91406 0.91894 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.50 9.28 127.77 1.19 2.69 16 2 N -0.60 -12.75 2.74 -817.59 -2.24 -14.99 16 3 C 0.51 11.08 7.46 87.66 0.65 11.74 16 4 O -0.58 -16.73 14.18 -3.04 -0.04 -16.77 16 5 C -0.13 -1.82 3.38 29.85 0.10 -1.72 16 6 C -0.08 -1.19 2.55 -10.07 -0.03 -1.22 16 7 C -0.11 -2.01 5.43 31.67 0.17 -1.84 16 8 C -0.13 -1.75 6.91 31.89 0.22 -1.53 16 9 C -0.12 -1.34 6.83 31.67 0.22 -1.12 16 10 C -0.12 -1.30 6.46 31.32 0.20 -1.10 16 11 C 0.14 3.29 3.46 45.89 0.16 3.45 16 12 H 0.10 2.49 6.96 -2.39 -0.02 2.47 16 13 C -0.12 -2.88 6.17 31.49 0.19 -2.69 16 14 C 0.04 1.18 5.80 86.45 0.50 1.68 16 15 N -0.50 -15.23 4.72 -885.58 -4.18 -19.41 16 16 C 0.05 1.57 5.30 85.56 0.45 2.02 16 17 C 0.45 20.76 7.59 87.66 0.66 21.43 16 18 O -0.61 -32.79 14.42 -3.07 -0.04 -32.83 16 19 N -0.58 -29.32 5.29 -306.98 -1.62 -30.95 16 20 C -0.33 -18.51 9.68 84.04 0.81 -17.69 16 21 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 23 N -0.92 -49.71 13.05 21.67 0.28 -49.43 16 24 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 C 0.03 0.66 5.73 86.42 0.49 1.15 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.14 6.44 -2.39 -0.02 1.13 16 31 H 0.07 1.59 6.56 -2.38 -0.02 1.58 16 32 H 0.11 1.17 7.40 -2.39 -0.02 1.15 16 33 H 0.11 1.26 7.97 -2.38 -0.02 1.24 16 34 H 0.06 1.16 7.93 -2.38 -0.02 1.15 16 35 H 0.06 1.03 7.76 -2.38 -0.02 1.02 16 36 H 0.05 1.07 7.66 -2.39 -0.02 1.05 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 0.68 7.67 -2.39 -0.02 0.66 16 43 H 0.08 1.87 6.87 -2.39 -0.02 1.85 16 44 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.07 2.51 6.91 -2.39 -0.02 2.49 16 46 H 0.04 1.22 7.83 -2.39 -0.02 1.20 16 47 H 0.07 2.09 7.88 -2.39 -0.02 2.07 16 48 H 0.11 3.26 8.13 -2.38 -0.02 3.24 16 49 H 0.39 19.19 7.90 -92.70 -0.73 18.45 16 50 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 51 H 0.06 1.41 8.00 -2.38 -0.02 1.39 16 52 H 0.09 2.08 8.05 -2.39 -0.02 2.06 16 Total: -1.00 -68.99 403.16 0.83 -68.16 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.17 Total: 36.52 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 6.47 Total: 14.91 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -7.76 Total: -114.78 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.09 Total: -49.60 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -68.99 0.83 -68.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732157249.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.555 kcal (2) G-P(sol) polarization free energy of solvation -68.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds