Wall clock time and date at job start Sat Apr 11 2020 05:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47085 * 2 1 4 4 C 1.53003 * 109.47049 * 184.95405 * 3 2 1 5 5 C 1.53002 * 109.46895 * 304.95558 * 3 2 1 6 6 C 1.53000 * 109.46882 * 299.99707 * 5 3 2 7 7 C 1.50697 * 109.47150 * 64.95399 * 3 2 1 8 8 O 1.21283 * 120.00263 * 231.63825 * 7 3 2 9 9 N 1.34779 * 120.00125 * 51.63933 * 7 3 2 10 10 C 1.47075 * 120.88185 * 185.10953 * 9 7 3 11 11 C 1.53238 * 108.52125 * 231.16235 * 10 9 7 12 12 N 1.46899 * 109.34329 * 306.17323 * 11 10 9 13 13 C 1.46897 * 111.00057 * 187.25433 * 12 11 10 14 14 H 1.09000 * 110.77860 * 296.98385 * 13 12 11 15 15 C 1.55153 * 110.72329 * 60.22957 * 13 12 11 16 16 C 1.54905 * 101.58391 * 153.86397 * 15 13 12 17 17 N 1.47430 * 104.83370 * 322.98773 * 16 15 13 18 18 C 1.36929 * 125.64993 * 204.08778 * 17 16 15 19 19 H 1.08008 * 120.00042 * 166.07156 * 18 17 16 20 20 C 1.38807 * 120.00431 * 346.07950 * 18 17 16 21 21 N 1.31615 * 120.00657 * 157.90108 * 20 18 17 22 22 Si 1.86806 * 119.99577 * 337.89517 * 20 18 17 23 23 H 1.48498 * 109.47288 * 90.00360 * 22 20 18 24 24 H 1.48500 * 109.47267 * 329.99844 * 22 20 18 25 25 H 1.48507 * 109.47081 * 210.00344 * 22 20 18 26 26 C 1.47024 * 108.69959 * 24.35706 * 17 16 15 27 27 C 1.46895 * 111.26807 * 63.10203 * 12 11 10 28 28 C 1.47085 * 120.87885 * 5.09021 * 9 7 3 29 29 H 1.09004 * 109.46892 * 60.00134 * 1 2 3 30 30 H 1.08999 * 109.46714 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47134 * 299.99994 * 1 2 3 32 32 H 1.09001 * 109.47594 * 239.99935 * 2 1 3 33 33 H 1.09005 * 109.46986 * 119.99319 * 2 1 3 34 34 H 1.08991 * 109.47415 * 291.14748 * 4 3 2 35 35 H 1.09004 * 109.47193 * 51.15370 * 4 3 2 36 36 H 1.09007 * 109.46928 * 171.14644 * 4 3 2 37 37 H 1.09002 * 109.46966 * 59.99806 * 5 3 2 38 38 H 1.09001 * 109.46919 * 180.02562 * 5 3 2 39 39 H 1.09001 * 109.46934 * 60.00510 * 6 5 3 40 40 H 1.09004 * 109.47009 * 180.02562 * 6 5 3 41 41 H 1.09000 * 109.47848 * 300.00113 * 6 5 3 42 42 H 1.08999 * 109.62586 * 111.45714 * 10 9 7 43 43 H 1.08995 * 109.63283 * 350.87694 * 10 9 7 44 44 H 1.09000 * 109.49665 * 186.21029 * 11 10 9 45 45 H 1.09005 * 109.51602 * 66.14381 * 11 10 9 46 46 H 1.09003 * 111.00102 * 35.79024 * 15 13 12 47 47 H 1.08998 * 111.00635 * 271.93801 * 15 13 12 48 48 H 1.09001 * 110.36966 * 204.15300 * 16 15 13 49 49 H 1.08998 * 110.36948 * 81.82584 * 16 15 13 50 50 H 0.97006 * 119.99630 * 5.08292 * 21 20 18 51 51 H 1.09003 * 109.88005 * 118.12709 * 26 17 16 52 52 H 1.09000 * 109.88177 * 239.29363 * 26 17 16 53 53 H 1.08996 * 109.49314 * 56.85894 * 27 12 11 54 54 H 1.09005 * 109.49158 * 176.93593 * 27 12 11 55 55 H 1.08998 * 109.62903 * 248.54538 * 28 9 7 56 56 H 1.09001 * 109.63054 * 8.93051 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1246 5 6 1.4307 2.1988 -1.1823 6 6 1.8365 1.5144 -2.4891 7 6 1.6403 2.1166 1.2872 8 8 1.0676 3.1854 1.2597 9 7 1.9193 1.5319 2.4690 10 6 1.4413 2.1156 3.7316 11 6 2.6301 2.2420 4.6902 12 7 3.2912 0.9367 4.8204 13 6 4.3283 0.9731 5.8601 14 1 5.1176 1.6763 5.5943 15 6 3.7123 1.3341 7.2376 16 6 4.7199 0.6739 8.2115 17 7 5.1188 -0.5810 7.5484 18 6 5.6041 -1.6965 8.1771 19 1 5.6572 -2.6355 7.6460 20 6 6.0275 -1.6206 9.4968 21 7 6.0784 -2.7089 10.2353 22 14 6.5252 0.0262 10.2247 23 1 5.3366 0.6799 10.8289 24 1 7.0768 0.8944 9.1537 25 1 7.5580 -0.1866 11.2704 26 6 4.9155 -0.4339 6.0998 27 6 3.8484 0.4912 3.5363 28 6 2.7096 0.2929 2.5303 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 4.0047 1.0466 0.7900 35 1 3.8611 0.8235 -0.9701 36 1 3.9154 2.4644 -0.2825 37 1 0.3443 2.1975 -1.0935 38 1 1.7944 3.2264 -1.1826 39 1 1.4732 0.4868 -2.4891 40 1 1.4029 2.0535 -3.3315 41 1 2.9229 1.5157 -2.5780 42 1 0.6838 1.4667 4.1712 43 1 1.0174 3.1016 3.5418 44 1 2.2759 2.5694 5.6677 45 1 3.3388 2.9710 4.2973 46 1 2.7194 0.8981 7.3478 47 1 3.6811 2.4142 7.3807 48 1 4.2406 0.4621 9.1673 49 1 5.5866 1.3190 8.3555 50 1 5.8913 -3.5738 9.8379 51 1 5.8683 -0.5336 5.5797 52 1 4.2161 -1.1909 5.7449 53 1 4.5400 1.2444 3.1590 54 1 4.3778 -0.4513 3.6769 55 1 2.0740 -0.5311 2.8545 56 1 3.1214 0.0721 1.5455 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046086409.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:14:06 Heat of formation + Delta-G solvation = -10.912991 kcal Electronic energy + Delta-G solvation = -31702.636652 eV Core-core repulsion = 27840.064406 eV Total energy + Delta-G solvation = -3862.572246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 337.247 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.05217 -40.25767 -38.37945 -37.80618 -35.71616 -34.19045 -32.66928 -32.03076 -31.35721 -30.41756 -29.84118 -27.78765 -26.00149 -25.49114 -24.83029 -24.12048 -23.12085 -22.39659 -21.24215 -20.77575 -19.64398 -19.50124 -17.85471 -17.24102 -17.08157 -16.99088 -16.55609 -16.23704 -15.98097 -15.88718 -15.54946 -15.42113 -15.13727 -14.98108 -14.61682 -14.52857 -14.06432 -13.84912 -13.80137 -13.60765 -13.37012 -13.24145 -13.01535 -12.97667 -12.94472 -12.83244 -12.64210 -12.57493 -12.35855 -12.27231 -12.13323 -11.99731 -11.86222 -11.69285 -11.66836 -11.42933 -11.41713 -11.21820 -11.06339 -10.68535 -10.52770 -9.83965 -9.30387 -9.11762 -8.60864 -5.44587 1.40910 1.53734 1.58688 1.69925 1.91921 2.53745 2.70391 3.09628 3.34908 3.46714 3.58003 3.63819 3.79692 3.86772 3.89276 3.96721 4.10228 4.16182 4.19547 4.21140 4.31906 4.34338 4.39812 4.45521 4.47601 4.52624 4.57167 4.62658 4.66750 4.69453 4.77654 4.79425 4.80801 4.85209 4.89936 4.93172 4.96106 4.96828 5.02442 5.05946 5.06525 5.13764 5.22615 5.26679 5.26859 5.27768 5.36906 5.41754 5.58884 5.59219 6.00921 6.04030 6.13269 6.39527 6.84461 7.11988 7.49315 8.14393 8.87313 Molecular weight = 337.25amu Principal moments of inertia in cm(-1) A = 0.025621 B = 0.002495 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.574811 B =11217.984240 C =11606.852602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C -0.074 4.074 4 C -0.152 4.152 5 C -0.098 4.098 6 C -0.150 4.150 7 C 0.523 3.477 8 O -0.586 6.586 9 N -0.608 5.608 10 C 0.118 3.882 11 C 0.048 3.952 12 N -0.530 5.530 13 C 0.087 3.913 14 H 0.056 0.944 15 C -0.108 4.108 16 C 0.093 3.907 17 N -0.630 5.630 18 C -0.313 4.313 19 H 0.042 0.958 20 C -0.079 4.079 21 N -0.960 5.960 22 Si 1.108 2.892 23 H -0.272 1.272 24 H -0.263 1.263 25 H -0.307 1.307 26 C 0.145 3.855 27 C 0.036 3.964 28 C 0.099 3.901 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.033 0.967 46 H 0.078 0.922 47 H 0.098 0.902 48 H 0.044 0.956 49 H 0.038 0.962 50 H 0.247 0.753 51 H 0.021 0.979 52 H 0.033 0.967 53 H 0.040 0.960 54 H 0.090 0.910 55 H 0.082 0.918 56 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 10.392 -25.837 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C -0.077 4.077 4 C -0.209 4.209 5 C -0.136 4.136 6 C -0.207 4.207 7 C 0.313 3.687 8 O -0.466 6.466 9 N -0.341 5.341 10 C -0.005 4.005 11 C -0.080 4.080 12 N -0.255 5.255 13 C -0.021 4.021 14 H 0.073 0.927 15 C -0.146 4.146 16 C -0.032 4.032 17 N -0.358 5.358 18 C -0.442 4.442 19 H 0.059 0.941 20 C -0.273 4.273 21 N -0.604 5.604 22 Si 0.934 3.066 23 H -0.198 1.198 24 H -0.189 1.189 25 H -0.236 1.236 26 C 0.020 3.980 27 C -0.093 4.093 28 C -0.023 4.023 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.117 0.883 45 H 0.052 0.948 46 H 0.097 0.903 47 H 0.117 0.883 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.057 0.943 51 H 0.039 0.961 52 H 0.051 0.949 53 H 0.059 0.941 54 H 0.109 0.891 55 H 0.100 0.900 56 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.376 11.270 -24.326 28.402 hybrid contribution 0.205 -0.699 -1.061 1.287 sum -9.171 10.571 -25.387 28.989 Atomic orbital electron populations 1.21831 0.95970 1.02192 1.01143 1.22162 0.96340 0.93180 1.05235 1.20870 0.98319 0.97198 0.91326 1.22173 0.91350 1.03215 1.04164 1.21362 1.00238 0.98395 0.93624 1.21867 1.02269 1.01136 0.95393 1.21177 0.77320 0.84282 0.85872 1.90645 1.44637 1.23617 1.87750 1.48200 1.53475 1.26548 1.05840 1.21651 0.96085 0.99838 0.82878 1.22444 0.95715 0.89251 1.00587 1.61933 1.29352 1.28129 1.06109 1.22423 0.92334 0.95544 0.91827 0.92660 1.22733 0.98486 1.00869 0.92506 1.22232 0.96497 0.87583 0.96889 1.44830 1.75852 1.12463 1.02623 1.19933 1.39233 0.87297 0.97691 0.94050 1.27166 0.98749 1.07433 0.93934 1.71018 1.54577 0.98986 1.35823 0.83322 0.76752 0.71683 0.74805 1.19803 1.18892 1.23611 1.21366 0.96671 0.95557 0.84402 1.22599 0.96330 1.01436 0.88924 1.22601 0.92556 0.86024 1.01129 0.92038 0.91273 0.95172 0.88196 0.89332 0.91060 0.88533 0.92742 0.92484 0.93234 0.91210 0.92387 0.91446 0.90463 0.89683 0.88341 0.94824 0.90345 0.88329 0.93793 0.94469 0.94347 0.96055 0.94914 0.94145 0.89125 0.90005 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.24 71.98 0.67 -1.42 16 2 C -0.13 -1.47 4.09 30.59 0.13 -1.34 16 3 C -0.07 -1.09 0.30 -52.93 -0.02 -1.11 16 4 C -0.15 -1.75 7.50 71.98 0.54 -1.21 16 5 C -0.10 -1.53 3.82 30.60 0.12 -1.41 16 6 C -0.15 -1.45 9.22 71.98 0.66 -0.79 16 7 C 0.52 11.47 5.46 87.66 0.48 11.95 16 8 O -0.59 -17.53 15.43 -3.04 -0.05 -17.58 16 9 N -0.61 -12.00 3.00 -817.95 -2.45 -14.45 16 10 C 0.12 2.46 6.61 86.35 0.57 3.03 16 11 C 0.05 1.01 5.46 86.38 0.47 1.48 16 12 N -0.53 -12.65 4.45 -863.06 -3.84 -16.49 16 13 C 0.09 2.55 2.64 46.11 0.12 2.67 16 14 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 15 C -0.11 -3.24 5.36 31.98 0.17 -3.07 16 16 C 0.09 3.80 4.67 86.85 0.41 4.21 16 17 N -0.63 -30.44 3.26 -691.94 -2.26 -32.70 16 18 C -0.31 -18.28 10.46 84.03 0.88 -17.40 16 19 H 0.04 2.62 8.06 -2.91 -0.02 2.59 16 20 C -0.08 -4.77 5.44 84.86 0.46 -4.30 16 21 N -0.96 -62.13 13.70 21.65 0.30 -61.83 16 22 Si 1.11 53.60 24.68 68.60 1.69 55.29 16 23 H -0.27 -12.08 6.63 99.48 0.66 -11.42 16 24 H -0.26 -11.60 6.03 99.48 0.60 -11.00 16 25 H -0.31 -15.15 7.11 99.48 0.71 -14.45 16 26 C 0.15 5.57 5.73 86.74 0.50 6.07 16 27 C 0.04 0.71 5.41 86.38 0.47 1.17 16 28 C 0.10 1.58 4.02 86.35 0.35 1.92 16 29 H 0.06 0.81 6.35 -2.38 -0.02 0.80 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.03 0.54 7.38 -2.39 -0.02 0.52 16 32 H 0.10 0.70 6.69 -2.39 -0.02 0.69 16 33 H 0.09 0.93 4.14 -2.38 -0.01 0.92 16 34 H 0.07 0.79 5.22 -2.39 -0.01 0.78 16 35 H 0.10 0.67 6.90 -2.38 -0.02 0.66 16 36 H 0.05 0.74 8.12 -2.38 -0.02 0.72 16 37 H 0.06 1.03 6.35 -2.39 -0.02 1.02 16 38 H 0.05 0.95 8.01 -2.39 -0.02 0.93 16 39 H 0.07 0.54 6.54 -2.39 -0.02 0.52 16 40 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.07 0.54 6.64 -2.39 -0.02 0.52 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.08 1.94 7.04 -2.39 -0.02 1.92 16 44 H 0.10 1.90 6.78 -2.39 -0.02 1.88 16 45 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 47 H 0.10 2.31 7.93 -2.39 -0.02 2.30 16 48 H 0.04 1.95 6.20 -2.39 -0.01 1.94 16 49 H 0.04 1.51 5.43 -2.39 -0.01 1.50 16 50 H 0.25 16.09 8.73 -92.70 -0.81 15.28 16 51 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 52 H 0.03 1.30 7.72 -2.39 -0.02 1.28 16 53 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.09 1.87 6.81 -2.38 -0.02 1.86 16 55 H 0.08 1.32 7.89 -2.39 -0.02 1.31 16 56 H 0.13 1.50 2.85 -2.39 -0.01 1.49 16 Total: -1.00 -74.75 392.68 1.02 -73.73 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.67 Total: 13.58 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 6.97 Total: 0.44 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -8.26 Total: -125.47 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.05 Total: -17.58 kcal Atomic # 14 Polarization: 53.60 SS G_CDS: 1.69 Total: 55.29 kcal Total: -74.75 1.02 -73.73 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046086409.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.814 kcal (2) G-P(sol) polarization free energy of solvation -74.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds