Wall clock time and date at job start Sat Apr 11 2020 05:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47223 * 2 1 4 4 C 1.53004 * 109.47018 * 60.00153 * 3 2 1 5 5 C 1.53002 * 109.47313 * 300.00012 * 3 2 1 6 6 C 1.52999 * 109.46901 * 294.67767 * 5 3 2 7 7 C 1.50699 * 109.47158 * 179.97438 * 3 2 1 8 8 O 1.21281 * 120.00068 * 358.69652 * 7 3 2 9 9 N 1.34772 * 120.00202 * 178.69186 * 7 3 2 10 10 C 1.47020 * 125.64835 * 354.44931 * 9 7 3 11 11 C 1.54327 * 107.27369 * 178.89969 * 10 9 7 12 12 C 1.55158 * 102.94163 * 337.80712 * 11 10 9 13 13 H 1.08997 * 111.00536 * 277.42741 * 12 11 10 14 14 N 1.46903 * 111.00264 * 153.60984 * 12 11 10 15 15 C 1.46901 * 110.99673 * 185.75749 * 14 12 11 16 16 C 1.53242 * 109.34105 * 172.75247 * 15 14 12 17 17 N 1.47079 * 108.52073 * 53.82441 * 16 15 14 18 18 C 1.36938 * 120.88045 * 128.80195 * 17 16 15 19 19 H 1.07995 * 119.99802 * 206.88625 * 18 17 16 20 20 C 1.38817 * 120.00017 * 26.88170 * 18 17 16 21 21 N 1.31614 * 120.00180 * 16.95163 * 20 18 17 22 22 Si 1.86797 * 119.99917 * 196.95590 * 20 18 17 23 23 H 1.48503 * 109.47241 * 94.98527 * 22 20 18 24 24 H 1.48496 * 109.47243 * 214.98552 * 22 20 18 25 25 H 1.48499 * 109.47259 * 334.98469 * 22 20 18 26 26 C 1.47079 * 118.23911 * 308.81823 * 17 16 15 27 27 C 1.46897 * 111.00002 * 61.45838 * 14 12 11 28 28 C 1.47429 * 125.64947 * 174.13690 * 9 7 3 29 29 H 1.08996 * 109.47080 * 300.00282 * 1 2 3 30 30 H 1.09004 * 109.47656 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47015 * 59.99883 * 1 2 3 32 32 H 1.09000 * 109.47156 * 120.00554 * 2 1 3 33 33 H 1.09006 * 109.46941 * 239.99796 * 2 1 3 34 34 H 1.09003 * 109.47243 * 67.60401 * 4 3 2 35 35 H 1.09000 * 109.46831 * 187.59624 * 4 3 2 36 36 H 1.08995 * 109.46808 * 307.60064 * 4 3 2 37 37 H 1.08998 * 109.46871 * 54.68039 * 5 3 2 38 38 H 1.09004 * 109.46966 * 174.68364 * 5 3 2 39 39 H 1.09004 * 109.47021 * 59.99993 * 6 5 3 40 40 H 1.09006 * 109.46959 * 179.97438 * 6 5 3 41 41 H 1.08998 * 109.47580 * 299.99837 * 6 5 3 42 42 H 1.08994 * 109.88351 * 298.31800 * 10 9 7 43 43 H 1.09001 * 109.88479 * 59.33161 * 10 9 7 44 44 H 1.08997 * 110.71923 * 96.16723 * 11 10 9 45 45 H 1.08999 * 110.72462 * 219.26755 * 11 10 9 46 46 H 1.09006 * 109.49513 * 292.70512 * 15 14 12 47 47 H 1.08993 * 109.49651 * 52.78611 * 15 14 12 48 48 H 1.09006 * 109.62164 * 294.11783 * 16 15 14 49 49 H 1.08991 * 109.63195 * 173.54273 * 16 15 14 50 50 H 0.96995 * 120.00454 * 179.97438 * 21 20 18 51 51 H 1.08998 * 109.62804 * 291.47287 * 26 17 16 52 52 H 1.09001 * 109.62958 * 170.89697 * 26 17 16 53 53 H 1.09002 * 109.49186 * 307.21186 * 27 14 12 54 54 H 1.09000 * 109.49555 * 67.26201 * 27 14 12 55 55 H 1.09000 * 110.36597 * 323.00883 * 28 9 7 56 56 H 1.09000 * 110.36867 * 85.33282 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1637 -1.2492 6 6 2.1463 1.5239 -2.4949 7 6 3.5470 1.4424 0.0006 8 8 4.1534 0.3924 0.0249 9 7 4.2209 2.6092 -0.0259 10 6 3.6197 3.9428 -0.1724 11 6 4.7687 4.9718 -0.1203 12 6 5.8932 4.1998 0.6193 13 1 5.7513 4.2425 1.6991 14 7 7.2180 4.7120 0.2443 15 6 8.2853 3.8951 0.8370 16 6 9.6393 4.3474 0.2800 17 7 9.7727 5.7962 0.4953 18 6 10.8879 6.3180 1.0946 19 1 10.8245 7.2519 1.6332 20 6 12.0999 5.6464 1.0100 21 7 12.2711 4.7095 0.1016 22 14 13.4878 6.0724 2.1854 23 1 13.4582 5.1435 3.3437 24 1 14.7892 5.9447 1.4817 25 1 13.3193 7.4676 2.6653 26 6 8.6763 6.6697 0.0501 27 6 7.3603 6.1260 0.6162 28 6 5.6826 2.7602 0.0937 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 2.0001 1.7344 2.1341 35 1 1.7782 3.2230 1.1839 36 1 0.4486 2.0474 1.3198 37 1 0.4442 2.0820 -1.2981 38 1 1.8136 3.2152 -1.2028 39 1 1.8629 0.4724 -2.5412 40 1 1.7827 2.0375 -3.3849 41 1 3.2322 1.6056 -2.4460 42 1 3.1022 4.0131 -1.1291 43 1 2.9187 4.1251 0.6422 44 1 5.0865 5.2461 -1.1262 45 1 4.4696 5.8559 0.4427 46 1 8.2784 4.0177 1.9201 47 1 8.1215 2.8466 0.5883 48 1 9.6873 4.1297 -0.7871 49 1 10.4422 3.8245 0.7996 50 1 13.1180 4.2405 0.0422 51 1 8.6319 6.6754 -1.0390 52 1 8.8425 7.6823 0.4178 53 1 6.5256 6.6954 0.2074 54 1 7.3657 6.2176 1.7024 55 1 6.0821 2.0348 0.8024 56 1 6.1572 2.6413 -0.8804 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052119234.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:14:24 Heat of formation + Delta-G solvation = -21.341555 kcal Electronic energy + Delta-G solvation = -31429.543402 eV Core-core repulsion = 27566.518939 eV Total energy + Delta-G solvation = -3863.024463 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 337.247 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.86564 -40.11458 -38.29227 -37.63469 -35.83896 -33.41956 -32.35490 -32.07878 -31.36839 -30.66599 -29.54189 -27.70452 -26.30251 -25.01027 -24.62824 -24.20979 -23.66226 -21.72633 -21.28152 -20.82017 -19.64242 -18.83070 -17.70425 -17.49357 -16.90515 -16.77076 -16.40517 -16.12010 -15.81617 -15.48477 -15.31588 -15.22148 -15.09276 -14.83141 -14.62920 -14.34048 -14.03248 -13.98473 -13.77347 -13.50878 -13.47615 -13.18363 -13.14901 -12.91053 -12.81784 -12.66852 -12.62690 -12.54662 -12.39389 -12.20714 -12.11818 -12.01800 -11.95820 -11.81945 -11.64927 -11.44811 -11.38652 -11.33782 -11.14617 -10.66989 -10.60095 -9.65916 -9.33361 -8.69941 -7.88944 -5.33955 1.45013 1.46430 1.55817 1.60077 1.88284 2.49367 2.94636 3.26572 3.29668 3.56791 3.65541 3.68974 3.71469 3.85630 4.03927 4.12476 4.16608 4.23757 4.32463 4.32725 4.37316 4.44694 4.50272 4.50978 4.55448 4.59816 4.68058 4.69052 4.71129 4.73369 4.79259 4.85543 4.88266 4.94738 4.97227 5.00010 5.05157 5.09227 5.13159 5.16827 5.21992 5.24842 5.27700 5.29561 5.32519 5.36599 5.42752 5.60308 5.61771 5.64988 6.11478 6.23831 6.35968 6.52511 7.11489 7.11984 7.82773 8.36901 9.18006 Molecular weight = 337.25amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.002330 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.993541 B =12013.767983 C =12367.758569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.068 4.068 4 C -0.149 4.149 5 C -0.122 4.122 6 C -0.158 4.158 7 C 0.532 3.468 8 O -0.594 6.594 9 N -0.613 5.613 10 C 0.089 3.911 11 C -0.116 4.116 12 C 0.073 3.927 13 H 0.052 0.948 14 N -0.527 5.527 15 C 0.052 3.948 16 C 0.188 3.812 17 N -0.615 5.615 18 C -0.261 4.261 19 H 0.071 0.929 20 C -0.055 4.055 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.288 1.288 24 H -0.295 1.295 25 H -0.265 1.265 26 C 0.143 3.857 27 C 0.058 3.942 28 C 0.118 3.882 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.025 0.975 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.108 0.892 46 H 0.019 0.981 47 H 0.068 0.932 48 H -0.003 1.003 49 H 0.053 0.947 50 H 0.249 0.751 51 H 0.017 0.983 52 H 0.063 0.937 53 H 0.106 0.894 54 H 0.024 0.976 55 H 0.050 0.950 56 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.133 -1.144 -0.404 30.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C -0.071 4.071 4 C -0.205 4.205 5 C -0.159 4.159 6 C -0.215 4.215 7 C 0.323 3.677 8 O -0.475 6.475 9 N -0.346 5.346 10 C -0.032 4.032 11 C -0.153 4.153 12 C -0.036 4.036 13 H 0.070 0.930 14 N -0.252 5.252 15 C -0.078 4.078 16 C 0.062 3.938 17 N -0.339 5.339 18 C -0.391 4.391 19 H 0.088 0.912 20 C -0.250 4.250 21 N -0.584 5.584 22 Si 0.797 3.203 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.189 1.189 26 C 0.017 3.983 27 C -0.071 4.071 28 C -0.005 4.005 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.105 0.895 45 H 0.127 0.873 46 H 0.037 0.963 47 H 0.087 0.913 48 H 0.015 0.985 49 H 0.071 0.929 50 H 0.058 0.942 51 H 0.035 0.965 52 H 0.082 0.918 53 H 0.124 0.876 54 H 0.042 0.958 55 H 0.068 0.932 56 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.674 -1.843 -0.929 29.746 hybrid contribution 1.975 -0.511 1.225 2.380 sum -27.699 -2.355 0.296 27.801 Atomic orbital electron populations 1.21903 0.92900 1.02459 1.03275 1.21353 0.97493 0.93647 1.01464 1.20858 0.87891 0.98814 0.99548 1.22108 1.03324 1.00949 0.94153 1.21970 1.02614 1.00384 0.90895 1.21857 0.99348 1.01379 0.98946 1.21083 0.91121 0.81399 0.74074 1.90675 1.71668 1.32652 1.52489 1.48466 1.06953 1.07287 1.71890 1.22790 0.96614 0.79761 1.04014 1.22755 0.92313 0.97946 1.02326 1.22676 0.89771 0.93604 0.97537 0.93023 1.61915 1.00981 1.03016 1.59322 1.22544 0.92881 0.96665 0.95682 1.20555 0.92883 0.84447 0.95928 1.44414 1.17914 1.02023 1.69542 1.19557 0.87129 1.07272 1.25122 0.91181 1.25832 0.99530 1.00160 0.99452 1.70191 1.24890 1.28795 1.34475 0.85229 0.78448 0.78314 0.78350 1.21526 1.22226 1.18926 1.21171 0.87202 0.93719 0.96169 1.22486 0.98853 0.88110 0.97604 1.21946 0.81658 0.96474 1.00457 0.90983 0.92432 0.90897 0.93585 0.92999 0.93771 0.89909 0.88485 0.87802 0.88885 0.92891 0.90643 0.95616 0.88379 0.88143 0.89547 0.87344 0.96287 0.91334 0.98456 0.92855 0.94155 0.96454 0.91813 0.87571 0.95770 0.93177 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.23 71.98 0.66 -0.86 16 2 C -0.10 -1.79 4.04 30.59 0.12 -1.67 16 3 C -0.07 -1.10 0.30 -52.93 -0.02 -1.12 16 4 C -0.15 -1.69 8.09 71.98 0.58 -1.11 16 5 C -0.12 -1.36 4.40 30.59 0.13 -1.22 16 6 C -0.16 -2.46 9.35 71.98 0.67 -1.79 16 7 C 0.53 13.70 5.05 87.66 0.44 14.14 16 8 O -0.59 -21.41 16.29 -3.03 -0.05 -21.46 16 9 N -0.61 -14.06 3.31 -812.22 -2.69 -16.75 16 10 C 0.09 1.24 5.21 86.73 0.45 1.70 16 11 C -0.12 -1.89 5.32 31.78 0.17 -1.72 16 12 C 0.07 1.85 2.70 46.23 0.12 1.97 16 13 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 14 N -0.53 -17.33 4.53 -862.33 -3.91 -21.24 16 15 C 0.05 2.07 5.48 86.38 0.47 2.54 16 16 C 0.19 9.52 5.42 86.35 0.47 9.99 16 17 N -0.61 -31.54 3.04 -698.14 -2.12 -33.66 16 18 C -0.26 -14.51 9.63 84.03 0.81 -13.70 16 19 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 20 C -0.05 -3.11 4.93 84.86 0.42 -2.69 16 21 N -0.94 -56.96 11.17 21.65 0.24 -56.72 16 22 Si 0.97 45.59 29.59 68.60 2.03 47.62 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 26 C 0.14 5.82 6.69 86.35 0.58 6.40 16 27 C 0.06 1.84 5.48 86.38 0.47 2.31 16 28 C 0.12 3.37 5.31 86.78 0.46 3.83 16 29 H 0.07 0.55 6.27 -2.39 -0.01 0.54 16 30 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.07 0.55 6.31 -2.38 -0.02 0.54 16 32 H 0.05 0.99 8.09 -2.39 -0.02 0.97 16 33 H 0.05 1.10 6.55 -2.38 -0.02 1.09 16 34 H 0.04 0.66 8.13 -2.39 -0.02 0.64 16 35 H 0.08 0.68 4.97 -2.39 -0.01 0.67 16 36 H 0.10 0.66 6.05 -2.39 -0.01 0.64 16 37 H 0.10 0.69 6.16 -2.39 -0.01 0.67 16 38 H 0.09 0.77 4.49 -2.39 -0.01 0.76 16 39 H 0.05 0.88 6.58 -2.39 -0.02 0.87 16 40 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.02 0.55 7.07 -2.39 -0.02 0.53 16 42 H 0.10 1.03 5.73 -2.39 -0.01 1.02 16 43 H 0.10 0.92 5.33 -2.39 -0.01 0.91 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.11 1.24 7.94 -2.39 -0.02 1.22 16 46 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.07 2.62 6.82 -2.39 -0.02 2.60 16 48 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 49 H 0.05 3.04 6.14 -2.39 -0.01 3.03 16 50 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 51 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 52 H 0.06 2.46 7.95 -2.39 -0.02 2.44 16 53 H 0.11 2.49 6.85 -2.39 -0.02 2.47 16 54 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 55 H 0.05 1.64 7.81 -2.39 -0.02 1.62 16 56 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -74.54 400.57 1.39 -73.15 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.85 Total: 12.05 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 7.03 Total: 17.01 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -8.48 Total: -128.37 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.05 Total: -21.46 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -74.54 1.39 -73.15 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052119234.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.813 kcal (2) G-P(sol) polarization free energy of solvation -74.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds