Wall clock time and date at job start Sat Apr 11 2020 05:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 110.99702 * 2 1 4 4 C 1.52994 * 109.47327 * 293.95547 * 3 2 1 5 5 C 1.50704 * 109.47494 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99590 * 359.97438 * 5 4 3 7 7 N 1.34769 * 120.00195 * 179.97438 * 5 4 3 8 8 C 1.46509 * 120.00117 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47250 * 179.97438 * 8 7 5 10 10 N 1.46499 * 109.46821 * 179.97438 * 9 8 7 11 11 C 1.36940 * 120.00402 * 269.99834 * 10 9 8 12 12 H 1.07995 * 119.99830 * 141.42541 * 11 10 9 13 13 C 1.38816 * 119.99752 * 321.43159 * 11 10 9 14 14 N 1.31618 * 119.99765 * 157.76282 * 13 11 10 15 15 Si 1.86800 * 119.99929 * 337.75864 * 13 11 10 16 16 H 1.48506 * 109.47031 * 95.68608 * 15 13 11 17 17 H 1.48496 * 109.46993 * 215.68385 * 15 13 11 18 18 H 1.48489 * 109.47402 * 335.68585 * 15 13 11 19 19 C 1.46500 * 119.99777 * 90.00391 * 10 9 8 20 20 C 1.52994 * 117.49873 * 183.18870 * 19 10 9 21 21 C 1.52997 * 117.49974 * 114.52622 * 19 10 9 22 22 C 1.46897 * 110.99853 * 123.95423 * 2 1 3 23 23 C 1.53004 * 109.46954 * 176.04716 * 22 2 1 24 24 C 1.53000 * 109.47270 * 179.97438 * 23 22 2 25 25 C 1.53001 * 109.47080 * 60.00039 * 24 23 22 26 26 C 1.53004 * 109.47037 * 300.00103 * 25 24 23 27 27 C 1.53000 * 109.47270 * 60.00013 * 26 25 24 28 28 H 1.09004 * 109.47357 * 296.04147 * 1 2 3 29 29 H 1.08996 * 109.47168 * 56.05051 * 1 2 3 30 30 H 1.09007 * 109.46944 * 176.04779 * 1 2 3 31 31 H 1.09000 * 109.47282 * 53.95637 * 3 2 1 32 32 H 1.09006 * 109.47211 * 173.94935 * 3 2 1 33 33 H 1.09000 * 109.47055 * 299.99699 * 4 3 2 34 34 H 1.08998 * 109.47655 * 59.99852 * 4 3 2 35 35 H 0.96995 * 120.00326 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.46575 * 300.00015 * 8 7 5 37 37 H 1.08998 * 109.47017 * 59.99484 * 8 7 5 38 38 H 1.08990 * 109.47343 * 300.00150 * 9 8 7 39 39 H 1.09004 * 109.46611 * 59.99822 * 9 8 7 40 40 H 0.96998 * 119.99971 * 179.97438 * 14 13 11 41 41 H 1.09001 * 115.54734 * 328.85993 * 19 10 9 42 42 H 1.09000 * 117.50299 * 359.97438 * 20 19 10 43 43 H 1.09002 * 117.49972 * 145.01991 * 20 19 10 44 44 H 1.09001 * 117.50109 * 214.98188 * 21 19 10 45 45 H 1.09002 * 117.49733 * 359.97438 * 21 19 10 46 46 H 1.09006 * 109.47285 * 296.04373 * 22 2 1 47 47 H 1.08995 * 109.47205 * 300.00261 * 23 22 2 48 48 H 1.08999 * 109.46984 * 60.00149 * 23 22 2 49 49 H 1.09005 * 109.47404 * 300.00460 * 24 23 22 50 50 H 1.08997 * 109.47705 * 180.02562 * 24 23 22 51 51 H 1.08997 * 109.47711 * 180.02562 * 25 24 23 52 52 H 1.09006 * 109.47125 * 59.99713 * 25 24 23 53 53 H 1.08995 * 109.47205 * 299.99447 * 26 25 24 54 54 H 1.08999 * 109.46984 * 179.97438 * 26 25 24 55 55 H 1.08997 * 109.47705 * 179.97438 * 27 26 25 56 56 H 1.09005 * 109.47404 * 59.99540 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1719 3.4642 -1.3185 6 8 2.7873 3.8775 -0.3586 7 7 1.9715 4.2629 -2.3853 8 6 2.4965 5.6307 -2.3854 9 6 2.1336 6.3162 -3.7042 10 7 2.6581 7.6841 -3.7039 11 6 1.8908 8.7116 -3.2234 12 1 2.3476 9.5037 -2.6488 13 6 0.5259 8.7349 -3.4751 14 7 -0.2756 9.4274 -2.6938 15 14 -0.1734 7.7836 -4.9226 16 1 -0.6557 6.4583 -4.4574 17 1 -1.3047 8.5425 -5.5136 18 1 0.8842 7.5936 -5.9475 19 6 4.0035 7.9528 -4.2176 20 6 4.5226 9.3888 -4.1217 21 6 4.1196 8.8094 -5.4800 22 6 1.9954 -0.7660 1.1376 23 6 3.5217 -0.8263 1.0492 24 6 4.0701 -1.6236 2.2343 25 6 3.5008 -3.0433 2.2011 26 6 1.9745 -2.9830 2.2895 27 6 1.4261 -2.1857 1.1043 28 1 -0.3634 0.4512 0.9234 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0708 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3445 0.1083 33 1 2.0658 1.5016 -2.1491 34 1 0.5471 2.0844 -1.4265 35 1 1.4796 3.9323 -3.1532 36 1 2.0617 6.1867 -1.5547 37 1 3.5807 5.6037 -2.2765 38 1 2.5686 5.7601 -4.5345 39 1 1.0494 6.3431 -3.8133 40 1 -1.2293 9.4441 -2.8698 41 1 4.7258 7.1468 -4.0881 42 1 3.8629 10.1338 -3.6767 43 1 5.5865 9.5277 -3.9295 44 1 4.9185 8.5672 -6.1809 45 1 3.1949 9.1726 -5.9285 46 1 1.7044 -0.2799 2.0688 47 1 3.8128 -1.3124 0.1180 48 1 3.9273 0.1851 1.0733 49 1 3.7790 -1.1372 3.1654 50 1 5.1574 -1.6663 2.1717 51 1 3.8910 -3.6113 3.0456 52 1 3.7918 -3.5298 1.2700 53 1 1.6834 -2.4966 3.2204 54 1 1.5689 -3.9944 2.2653 55 1 0.3388 -2.1431 1.1670 56 1 1.7172 -2.6721 0.1733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731881327.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:14:30 Heat of formation + Delta-G solvation = -18.592935 kcal Electronic energy + Delta-G solvation = -29609.330699 eV Core-core repulsion = 25746.425426 eV Total energy + Delta-G solvation = -3862.905274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 337.247 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.94608 -40.10859 -39.03049 -37.08225 -36.36648 -34.97497 -33.39481 -32.61806 -31.75915 -30.16790 -29.34803 -27.14671 -26.14234 -24.45770 -23.60851 -23.07138 -22.88200 -21.80192 -21.47788 -21.13628 -20.60598 -18.72802 -17.97835 -17.50389 -17.34327 -17.13652 -16.73300 -16.34876 -15.98549 -15.71282 -15.53036 -15.34424 -15.10069 -14.89313 -14.61102 -14.53632 -14.28295 -14.13402 -14.11687 -13.64699 -13.52501 -13.41257 -13.31334 -12.85414 -12.71960 -12.67250 -12.52440 -12.28767 -12.24832 -12.10947 -11.99029 -11.84237 -11.78964 -11.74642 -11.43542 -11.33325 -11.16970 -11.04062 -10.90320 -10.80258 -10.65194 -10.07780 -9.35635 -8.70091 -8.22805 -5.64438 1.25998 1.41137 1.52666 1.64647 2.08985 2.38829 2.86990 3.03688 3.25518 3.32338 3.72157 3.79485 3.80872 4.00992 4.07364 4.10701 4.14103 4.23536 4.27355 4.28185 4.33735 4.38123 4.43978 4.47464 4.50647 4.55855 4.58110 4.61831 4.62757 4.66641 4.69444 4.86982 4.91215 4.93791 4.95301 4.99035 5.02278 5.04513 5.11955 5.15569 5.19497 5.27146 5.28995 5.29765 5.35980 5.36996 5.45908 5.53505 5.55192 5.91612 6.03676 6.12622 6.18407 6.57470 6.94271 7.27450 7.57798 7.97303 8.96145 Molecular weight = 337.25amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002014 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.028916 B =13901.109697 C =14742.567989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.536 5.536 3 C 0.072 3.928 4 C -0.123 4.123 5 C 0.507 3.493 6 O -0.593 6.593 7 N -0.717 5.717 8 C 0.118 3.882 9 C 0.132 3.868 10 N -0.582 5.582 11 C -0.258 4.258 12 H 0.041 0.959 13 C -0.022 4.022 14 N -0.947 5.947 15 Si 0.943 3.057 16 H -0.263 1.263 17 H -0.312 1.312 18 H -0.252 1.252 19 C 0.102 3.898 20 C -0.191 4.191 21 C -0.205 4.205 22 C 0.085 3.915 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.107 4.107 28 H 0.017 0.983 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.017 0.983 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.415 0.585 36 H 0.028 0.972 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.263 0.737 41 H 0.126 0.874 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.062 0.938 46 H 0.025 0.975 47 H 0.071 0.929 48 H 0.050 0.950 49 H 0.055 0.945 50 H 0.068 0.932 51 H 0.069 0.931 52 H 0.066 0.934 53 H 0.056 0.944 54 H 0.076 0.924 55 H 0.067 0.933 56 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.019 -28.234 2.329 28.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.260 5.260 3 C -0.057 4.057 4 C -0.163 4.163 5 C 0.295 3.705 6 O -0.474 6.474 7 N -0.369 5.369 8 C -0.009 4.009 9 C 0.007 3.993 10 N -0.302 5.302 11 C -0.388 4.388 12 H 0.059 0.941 13 C -0.219 4.219 14 N -0.590 5.590 15 Si 0.771 3.229 16 H -0.189 1.189 17 H -0.241 1.241 18 H -0.176 1.176 19 C -0.005 4.005 20 C -0.229 4.229 21 C -0.246 4.246 22 C -0.023 4.023 23 C -0.151 4.151 24 C -0.156 4.156 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.145 4.145 28 H 0.036 0.964 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.035 0.965 32 H 0.094 0.906 33 H 0.145 0.855 34 H 0.129 0.871 35 H 0.251 0.749 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.143 0.857 42 H 0.085 0.915 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.081 0.919 46 H 0.043 0.957 47 H 0.090 0.910 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.085 0.915 53 H 0.075 0.925 54 H 0.094 0.906 55 H 0.086 0.914 56 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.440 -28.105 2.607 28.746 hybrid contribution -1.304 1.147 0.281 1.759 sum 4.137 -26.959 2.888 27.427 Atomic orbital electron populations 1.22605 0.86821 1.03363 1.00723 1.62076 1.08439 1.12203 1.43302 1.21746 1.00753 0.87930 0.95241 1.21594 1.03720 0.89879 1.01074 1.21337 0.78967 0.88677 0.81558 1.90686 1.43546 1.77202 1.35917 1.45944 1.57371 1.13495 1.20099 1.21747 0.98228 0.81199 0.99697 1.21380 0.97892 0.84922 0.95151 1.43600 1.13814 1.02130 1.70633 1.18530 0.89775 1.03837 1.26613 0.94144 1.26191 0.96961 0.99021 0.99701 1.70014 1.04058 1.46553 1.38370 0.85852 0.77437 0.78021 0.81622 1.18891 1.24127 1.17577 1.21536 0.87270 0.93768 0.97955 1.23059 1.00783 0.97740 1.01345 1.23356 1.02114 1.07451 0.91653 1.21682 0.95394 0.94658 0.90581 1.21625 0.93951 0.99967 0.99574 1.21527 1.00432 0.96081 0.97591 1.21540 0.95398 0.96144 1.02408 1.21532 0.95795 1.00440 0.97767 1.21607 1.00107 0.93289 0.99514 0.96436 0.90298 0.89467 0.96453 0.90594 0.85538 0.87066 0.74902 0.95357 0.92226 0.89532 0.93766 0.92793 0.85675 0.91497 0.87071 0.86821 0.91913 0.95709 0.90985 0.93158 0.92667 0.91295 0.91234 0.91532 0.92516 0.90571 0.91395 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 8.91 127.69 1.14 1.33 16 2 N -0.54 -9.71 4.63 -897.03 -4.15 -13.86 16 3 C 0.07 1.62 4.06 86.30 0.35 1.97 16 4 C -0.12 -2.48 5.63 29.85 0.17 -2.31 16 5 C 0.51 15.24 7.83 87.66 0.69 15.93 16 6 O -0.59 -23.67 15.98 -3.04 -0.05 -23.72 16 7 N -0.72 -20.81 5.56 -463.05 -2.57 -23.38 16 8 C 0.12 4.42 6.00 86.38 0.52 4.94 16 9 C 0.13 5.05 4.66 86.38 0.40 5.45 16 10 N -0.58 -26.13 2.39 -678.06 -1.62 -27.76 16 11 C -0.26 -14.31 8.95 84.03 0.75 -13.55 16 12 H 0.04 2.55 6.86 -2.91 -0.02 2.53 16 13 C -0.02 -1.26 5.30 84.86 0.45 -0.81 16 14 N -0.95 -58.85 13.97 21.65 0.30 -58.55 16 15 Si 0.94 43.91 25.08 68.60 1.72 45.63 16 16 H -0.26 -11.11 6.69 99.48 0.67 -10.45 16 17 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 18 H -0.25 -11.06 7.11 99.48 0.71 -10.35 16 19 C 0.10 3.80 6.56 44.99 0.30 4.10 16 20 C -0.19 -7.05 9.80 30.62 0.30 -6.75 16 21 C -0.21 -7.14 10.36 30.62 0.32 -6.82 16 22 C 0.08 1.45 1.94 44.92 0.09 1.54 16 23 C -0.11 -1.91 5.00 30.60 0.15 -1.76 16 24 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 25 C -0.12 -1.30 5.92 30.60 0.18 -1.12 16 26 C -0.12 -1.30 5.92 30.60 0.18 -1.12 16 27 C -0.11 -1.39 4.84 30.59 0.15 -1.24 16 28 H 0.02 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.08 1.08 6.30 -2.39 -0.02 1.06 16 30 H 0.09 1.07 6.24 -2.38 -0.01 1.05 16 31 H 0.02 0.47 8.08 -2.39 -0.02 0.45 16 32 H 0.08 1.89 5.79 -2.38 -0.01 1.88 16 33 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.11 1.85 6.47 -2.39 -0.02 1.84 16 35 H 0.41 9.01 8.47 -92.71 -0.79 8.22 16 36 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.09 2.67 8.07 -2.39 -0.02 2.65 16 39 H 0.04 1.84 3.40 -2.39 -0.01 1.83 16 40 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 42 H 0.07 2.98 6.45 -2.39 -0.02 2.96 16 43 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 47 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.05 1.01 6.20 -2.39 -0.01 0.99 16 49 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 50 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 51 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 53 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 54 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 55 H 0.07 0.82 6.35 -2.39 -0.02 0.80 16 56 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -72.15 421.53 -0.04 -72.20 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: 0.02 Total: 31.15 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 6.31 Total: -1.70 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -8.05 Total: -123.55 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.72 Total: 45.63 kcal Total: -72.15 -0.04 -72.20 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731881327.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.604 kcal (2) G-P(sol) polarization free energy of solvation -72.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds