Wall clock time and date at job start Sat Apr 11 2020 05:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.91940 * 2 1 4 4 C 1.54918 * 111.00284 * 236.10352 * 2 1 3 5 5 N 1.47425 * 104.82827 * 204.91696 * 4 2 1 6 6 C 1.34778 * 125.64271 * 204.07868 * 5 4 2 7 7 O 1.21605 * 120.00517 * 0.02834 * 6 5 4 8 8 C 1.47433 * 120.00001 * 180.02562 * 6 5 4 9 9 C 1.41288 * 126.41137 * 0.03070 * 8 6 5 10 10 N 1.30451 * 108.02049 * 179.97438 * 9 8 6 11 11 N 1.39926 * 108.89830 * 359.97438 * 10 9 8 12 12 H 0.97006 * 125.75614 * 180.02562 * 11 10 9 13 13 C 1.34262 * 108.49155 * 359.75853 * 11 10 9 14 14 C 1.47015 * 108.70882 * 24.12597 * 5 4 2 15 15 C 1.54325 * 107.27065 * 358.94051 * 14 5 4 16 16 H 1.08993 * 110.72326 * 96.17079 * 15 14 5 17 17 N 1.46501 * 110.71973 * 219.44858 * 15 14 5 18 18 C 1.34776 * 119.99706 * 268.51725 * 17 15 14 19 19 O 1.21283 * 120.00117 * 0.02562 * 18 17 15 20 20 C 1.50702 * 120.00043 * 180.02562 * 18 17 15 21 21 S 1.81007 * 109.47096 * 180.02562 * 20 18 17 22 22 C 1.76193 * 99.99942 * 179.97438 * 21 20 18 23 23 H 1.08006 * 120.00315 * 0.02562 * 22 21 20 24 24 C 1.38797 * 120.00418 * 179.97438 * 22 21 20 25 25 N 1.31637 * 119.99314 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00661 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46838 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46813 * 119.99776 * 26 24 22 29 29 H 1.48494 * 109.47475 * 240.00443 * 26 24 22 30 30 H 1.08999 * 109.46952 * 296.09720 * 1 2 3 31 31 H 1.08996 * 109.47229 * 56.09549 * 1 2 3 32 32 H 1.09000 * 109.47156 * 176.09970 * 1 2 3 33 33 H 1.08999 * 110.35942 * 323.74888 * 4 2 1 34 34 H 1.08996 * 110.36556 * 86.07721 * 4 2 1 35 35 H 1.08005 * 125.99025 * 359.97003 * 9 8 6 36 36 H 1.08005 * 126.29166 * 180.24583 * 13 11 10 37 37 H 1.09000 * 109.88350 * 239.52260 * 14 5 4 38 38 H 1.08998 * 109.88602 * 118.35926 * 14 5 4 39 39 H 0.96994 * 120.00419 * 88.52568 * 17 15 14 40 40 H 1.09000 * 109.46834 * 300.00055 * 20 18 17 41 41 H 1.08997 * 109.47171 * 60.00503 * 20 18 17 42 42 H 0.97002 * 119.99613 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4271 -1.2430 -0.7735 6 6 4.4475 -1.5617 -1.5942 7 8 4.3003 -1.4999 -2.7998 8 6 5.7423 -1.9852 -1.0306 9 6 6.0611 -2.1048 0.3407 10 7 7.2993 -2.5049 0.4337 11 7 7.8239 -2.6586 -0.8544 12 1 8.7250 -2.9468 -1.0688 13 6 6.8679 -2.3457 -1.7437 14 6 3.4675 -1.2742 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 1.4468 -1.6632 1.4208 17 7 2.2288 0.0495 2.3814 18 6 2.2006 -0.4916 3.6154 19 8 2.0576 -1.6885 3.7496 20 6 2.3467 0.3904 4.8285 21 16 2.2691 -0.6244 6.3253 22 6 2.4615 0.6251 7.5525 23 1 2.5787 1.6577 7.2582 24 6 2.4613 0.2828 8.8976 25 7 2.3179 -0.9756 9.2563 26 14 2.6659 1.6075 10.1987 27 1 2.8083 2.9306 9.5398 28 1 1.4730 1.6212 11.0829 29 1 3.8785 1.3238 11.0075 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0699 33 1 1.4518 -1.6703 -1.4025 34 1 2.1559 -0.1719 -2.0837 35 1 5.3963 -1.9008 1.1670 36 1 6.9630 -2.3690 -2.8193 37 1 4.2427 -0.5998 1.0597 38 1 3.6651 -2.2894 1.0398 39 1 2.3434 1.0067 2.2741 40 1 3.3060 0.9064 4.7891 41 1 1.5401 1.1235 4.8440 42 1 2.3182 -1.2149 10.1964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071671373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:17:11 Heat of formation + Delta-G solvation = -16.502754 kcal Electronic energy + Delta-G solvation = -26268.619974 eV Core-core repulsion = 22375.633014 eV Total energy + Delta-G solvation = -3892.986960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.47920 -41.26641 -40.17710 -38.56726 -35.29134 -34.55208 -33.94521 -32.64220 -31.37338 -31.24384 -29.13776 -27.61927 -27.60654 -24.74535 -23.48954 -22.63315 -21.76384 -21.37347 -20.59760 -19.76007 -19.24140 -17.95959 -17.70549 -17.24784 -16.85342 -16.73791 -16.43961 -16.32223 -15.89834 -15.67726 -15.43884 -15.03432 -14.73172 -14.61022 -14.46460 -14.22220 -13.91903 -13.82489 -13.43685 -13.27076 -13.12420 -13.02636 -12.90121 -12.58368 -12.29340 -12.25293 -12.09126 -11.74689 -11.63339 -11.13270 -11.04995 -10.92955 -10.90205 -10.21962 -10.15237 -10.03243 -9.63929 -8.61536 -8.32184 -6.08614 0.49362 1.05602 1.29399 1.42879 1.48647 1.58523 1.62824 1.72644 1.93722 2.28619 2.32635 2.38685 3.02363 3.22765 3.36873 3.46465 3.65725 3.82534 3.90087 3.96929 4.01252 4.12147 4.25264 4.34510 4.37503 4.44323 4.53950 4.58609 4.64469 4.72619 4.79455 4.86997 5.01985 5.13174 5.17752 5.30993 5.41668 5.45571 5.50128 6.18483 6.22989 6.37315 6.45420 6.52373 7.10016 7.11129 7.27200 8.76988 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.002574 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.748887 B =10873.796266 C =12454.825898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.110 0.890 4 C 0.112 3.888 5 N -0.611 5.611 6 C 0.611 3.389 7 O -0.582 6.582 8 C -0.321 4.321 9 C 0.071 3.929 10 N -0.325 5.325 11 N -0.448 5.448 12 H 0.461 0.539 13 C 0.154 3.846 14 C 0.084 3.916 15 C 0.140 3.860 16 H 0.094 0.906 17 N -0.700 5.700 18 C 0.540 3.460 19 O -0.558 6.558 20 C -0.131 4.131 21 S -0.150 6.150 22 C -0.543 4.543 23 H 0.083 0.917 24 C 0.013 3.987 25 N -0.911 5.911 26 Si 0.996 3.004 27 H -0.256 1.256 28 H -0.275 1.275 29 H -0.276 1.276 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.199 0.801 36 H 0.223 0.777 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.419 0.581 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.771 3.969 -25.422 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.128 0.872 4 C -0.010 4.010 5 N -0.343 5.343 6 C 0.403 3.597 7 O -0.464 6.464 8 C -0.335 4.335 9 C -0.117 4.117 10 N -0.146 5.146 11 N -0.154 5.154 12 H 0.309 0.691 13 C -0.001 4.001 14 C -0.040 4.040 15 C 0.033 3.967 16 H 0.112 0.888 17 N -0.354 5.354 18 C 0.326 3.674 19 O -0.435 6.435 20 C -0.282 4.282 21 S 0.078 5.922 22 C -0.691 4.691 23 H 0.101 0.899 24 C -0.192 4.192 25 N -0.548 5.548 26 Si 0.818 3.182 27 H -0.180 1.180 28 H -0.201 1.201 29 H -0.202 1.202 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.216 0.784 36 H 0.240 0.760 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.257 0.743 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.460 1.568 -24.927 25.566 hybrid contribution 0.139 2.007 0.373 2.047 sum 5.599 3.575 -24.554 25.437 Atomic orbital electron populations 1.21703 0.92017 1.02865 1.03169 1.22622 0.97616 0.99858 0.91238 0.87226 1.22422 0.81751 0.98878 0.97989 1.48098 1.12679 1.66952 1.06601 1.17011 0.82284 0.75745 0.84661 1.90746 1.83787 1.56854 1.15032 1.20284 0.96962 1.22842 0.93462 1.24907 0.93451 0.96010 0.97315 1.77223 1.12095 1.24174 1.01088 1.46323 1.14477 1.51301 1.03315 0.69083 1.23490 0.86788 0.91566 0.98270 1.22797 0.99213 1.02186 0.79812 1.21995 0.94970 0.94833 0.84862 0.88798 1.45613 1.74600 1.11850 1.03370 1.20027 0.74899 0.87933 0.84565 1.90717 1.49197 1.17060 1.86527 1.23384 1.06844 1.02352 0.95653 1.85574 1.95702 1.14475 0.96492 1.23236 1.57389 0.95192 0.93289 0.89911 1.26092 0.94039 0.98564 1.00494 1.70190 1.47931 1.18709 1.17961 0.84940 0.77938 0.78047 0.77252 1.17981 1.20076 1.20153 0.91973 0.90235 0.92325 0.90560 0.89452 0.78450 0.76041 0.89542 0.90969 0.74263 0.87108 0.87074 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.31 71.98 0.67 -0.90 16 2 C -0.09 -1.16 3.27 -9.40 -0.03 -1.20 16 3 H 0.11 1.03 8.01 -2.39 -0.02 1.02 16 4 C 0.11 1.73 6.38 86.86 0.55 2.28 16 5 N -0.61 -11.90 3.33 -815.65 -2.71 -14.61 16 6 C 0.61 14.14 7.85 86.67 0.68 14.82 16 7 O -0.58 -16.33 17.15 -4.05 -0.07 -16.40 16 8 C -0.32 -6.53 6.09 -20.15 -0.12 -6.65 16 9 C 0.07 1.53 10.45 85.65 0.89 2.42 16 10 N -0.32 -7.16 12.63 -56.27 -0.71 -7.87 16 11 N -0.45 -6.14 7.29 -56.32 -0.41 -6.55 16 12 H 0.46 2.74 8.96 -213.42 -1.91 0.83 16 13 C 0.15 2.18 11.82 84.27 1.00 3.18 16 14 C 0.08 1.60 4.73 86.73 0.41 2.01 16 15 C 0.14 2.57 2.79 46.18 0.13 2.70 16 16 H 0.09 2.15 7.45 -2.39 -0.02 2.13 16 17 N -0.70 -14.11 5.10 -436.92 -2.23 -16.34 16 18 C 0.54 17.37 7.85 87.66 0.69 18.06 16 19 O -0.56 -23.22 15.51 -3.04 -0.05 -23.27 16 20 C -0.13 -4.73 6.16 71.24 0.44 -4.29 16 21 S -0.15 -7.96 20.57 -56.49 -1.16 -9.13 16 22 C -0.54 -30.15 9.50 67.95 0.65 -29.50 16 23 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 24 C 0.01 0.71 5.49 84.86 0.47 1.18 16 25 N -0.91 -55.20 13.22 21.65 0.29 -54.92 16 26 Si 1.00 42.93 29.55 68.60 2.03 44.96 16 27 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 28 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 29 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.72 8.07 -2.39 -0.02 0.70 16 33 H 0.08 1.16 7.98 -2.39 -0.02 1.14 16 34 H 0.09 1.34 8.04 -2.39 -0.02 1.32 16 35 H 0.20 4.09 4.47 -2.91 -0.01 4.08 16 36 H 0.22 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.09 1.54 6.72 -2.39 -0.02 1.52 16 38 H 0.07 1.55 7.00 -2.39 -0.02 1.53 16 39 H 0.42 5.65 8.56 -92.71 -0.79 4.86 16 40 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 41 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 42 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -83.21 369.35 -0.23 -83.44 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -1.62 Total: 16.57 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 6.42 Total: 4.11 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -5.78 Total: -100.29 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.12 Total: -39.66 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.13 kcal Total: -83.21 -0.23 -83.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071671373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.940 kcal (2) G-P(sol) polarization free energy of solvation -83.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds