Wall clock time and date at job start Sat Apr 11 2020 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46988 * 2 1 4 4 C 1.50692 * 109.47198 * 239.99406 * 2 1 3 5 5 O 1.21282 * 120.00480 * 240.00230 * 4 2 1 6 6 N 1.34781 * 119.99744 * 60.00316 * 4 2 1 7 7 C 1.46502 * 120.00030 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.63978 * 36.68819 * 7 6 4 9 9 C 1.54325 * 110.72229 * 273.54675 * 7 6 4 10 10 N 1.47019 * 107.27012 * 219.44348 * 9 7 6 11 11 C 1.36931 * 125.64858 * 178.97595 * 10 9 7 12 12 H 1.08001 * 120.00097 * 359.97438 * 11 10 9 13 13 C 1.38815 * 120.00164 * 179.97438 * 11 10 9 14 14 N 1.31612 * 119.99915 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99835 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47329 * 90.00202 * 15 13 11 17 17 H 1.48510 * 109.47171 * 209.99729 * 15 13 11 18 18 H 1.48500 * 109.47596 * 330.00112 * 15 13 11 19 19 C 1.47427 * 108.70380 * 358.93781 * 10 9 7 20 20 C 1.54912 * 104.83202 * 24.12983 * 19 10 9 21 21 H 1.08997 * 111.00164 * 204.91333 * 20 19 10 22 22 O 1.42903 * 111.00416 * 81.06457 * 20 19 10 23 23 C 1.50706 * 109.46825 * 119.99566 * 2 1 3 24 24 C 1.38264 * 119.99067 * 239.99613 * 23 2 1 25 25 C 1.38224 * 120.02445 * 180.02562 * 24 23 2 26 26 C 1.38237 * 120.01313 * 0.26351 * 25 24 23 27 27 C 1.38338 * 119.98297 * 359.50743 * 26 25 24 28 28 Cl 1.73597 * 120.00852 * 180.25600 * 27 26 25 29 29 C 1.38189 * 119.99237 * 60.02508 * 23 2 1 30 30 H 1.08995 * 109.46829 * 60.00409 * 1 2 3 31 31 H 1.08997 * 109.46789 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46747 * 300.00084 * 1 2 3 33 33 H 0.96993 * 120.00424 * 359.97438 * 6 4 2 34 34 H 1.09000 * 109.87998 * 338.85953 * 9 7 6 35 35 H 1.08996 * 109.88124 * 99.87092 * 9 7 6 36 36 H 0.97002 * 119.99768 * 180.02562 * 14 13 11 37 37 H 1.09002 * 110.36678 * 142.96736 * 19 10 9 38 38 H 1.08996 * 110.36948 * 265.17860 * 19 10 9 39 39 H 0.96693 * 113.99782 * 67.79927 * 22 20 19 40 40 H 1.07997 * 119.98741 * 359.97438 * 24 23 2 41 41 H 1.08002 * 119.99032 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.00242 * 179.74655 * 26 25 24 43 43 H 1.08000 * 120.00840 * 359.97438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1956 -0.9404 -3.6506 8 1 2.2120 -2.0187 -3.4922 9 6 3.5959 -0.4251 -4.0447 10 7 3.6317 -0.3373 -5.5118 11 6 4.6932 0.0975 -6.2596 12 1 5.6037 0.4136 -5.7721 13 6 4.5992 0.1320 -7.6441 14 7 3.4896 -0.2528 -8.2381 15 14 6.0471 0.7258 -8.6640 16 1 6.9215 -0.4264 -9.0003 17 1 5.5481 1.3502 -9.9157 18 1 6.8230 1.7257 -7.8872 19 6 2.3358 -0.7958 -6.0447 20 6 1.3308 -0.5765 -4.8864 21 1 0.4772 -1.2481 -4.9774 22 8 0.9041 0.7861 -4.8295 23 6 2.0323 -0.7104 1.2306 24 6 2.8273 -0.0382 2.1405 25 6 3.2888 -0.6892 3.2692 26 6 2.9602 -2.0143 3.4860 27 6 2.1610 -2.6859 2.5783 28 17 1.7425 -4.3481 2.8533 29 6 1.6988 -2.0335 1.4489 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.1489 0.5383 -2.5436 34 1 3.7640 0.5603 -3.6101 35 1 4.3588 -1.1199 -3.6938 36 1 3.4240 -0.2291 -9.2056 37 1 2.0505 -0.2008 -6.9122 38 1 2.3869 -1.8517 -6.3100 39 1 0.3606 1.0597 -5.5811 40 1 3.0884 0.9956 1.9690 41 1 3.9100 -0.1638 3.9794 42 1 3.3243 -2.5240 4.3658 43 1 1.0779 -2.5584 0.7380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084075820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:18:23 Heat of formation + Delta-G solvation = -39.267594 kcal Electronic energy + Delta-G solvation = -26924.458776 eV Core-core repulsion = 22996.148201 eV Total energy + Delta-G solvation = -3928.310575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.42270 -39.09768 -37.81954 -36.60262 -34.75728 -34.31962 -33.91018 -31.66230 -30.90259 -29.74428 -28.45992 -26.99328 -25.09513 -24.32226 -22.87135 -22.17028 -20.64277 -20.12227 -19.62712 -17.54232 -17.24815 -16.85363 -16.67113 -15.88180 -15.56752 -15.21645 -14.81953 -14.69408 -14.26656 -14.08143 -13.84433 -13.78186 -13.54016 -13.08996 -12.92477 -12.74090 -12.50054 -12.43730 -11.96855 -11.77823 -11.66184 -11.47072 -11.36690 -11.32022 -11.07646 -10.93784 -10.86215 -10.61633 -10.36557 -10.05574 -9.85055 -9.62394 -9.25514 -9.03493 -8.83636 -8.71645 -8.67397 -6.85881 -5.70409 -3.10041 0.97705 1.11254 1.99065 2.78963 3.22818 3.39021 3.44106 3.45793 3.58928 4.27862 4.46343 4.53673 4.60427 4.82328 4.83313 4.90881 5.03179 5.09616 5.23154 5.32214 5.35817 5.43663 5.45971 5.48728 5.62784 5.71294 5.72633 5.86491 5.91597 6.04052 6.05632 6.11602 6.26734 6.31860 6.53918 6.60458 6.70754 6.94135 7.24638 7.55286 7.70313 7.80556 8.09612 8.30134 8.44962 9.17380 9.78385 10.41691 11.34815 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.002478 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.320454 B =11296.699766 C =11562.444713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 H 0.108 0.892 4 C 0.512 3.488 5 O -0.534 6.534 6 N -0.705 5.705 7 C 0.143 3.857 8 H 0.099 0.901 9 C 0.132 3.868 10 N -0.596 5.596 11 C -0.216 4.216 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.927 5.927 15 Si 0.916 3.084 16 H -0.289 1.289 17 H -0.290 1.290 18 H -0.281 1.281 19 C 0.127 3.873 20 C 0.068 3.932 21 H 0.058 0.942 22 O -0.561 6.561 23 C -0.051 4.051 24 C -0.107 4.107 25 C -0.111 4.111 26 C -0.113 4.113 27 C -0.035 4.035 28 Cl -0.075 7.075 29 C -0.073 4.073 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.407 0.593 34 H 0.028 0.972 35 H 0.027 0.973 36 H 0.252 0.748 37 H 0.115 0.885 38 H 0.022 0.978 39 H 0.379 0.621 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.475 0.506 21.126 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.094 4.094 3 H 0.126 0.874 4 C 0.297 3.703 5 O -0.411 6.411 6 N -0.357 5.357 7 C 0.038 3.962 8 H 0.117 0.883 9 C 0.005 3.995 10 N -0.323 5.323 11 C -0.344 4.344 12 H 0.096 0.904 13 C -0.208 4.208 14 N -0.577 5.577 15 Si 0.747 3.253 16 H -0.216 1.216 17 H -0.217 1.217 18 H -0.207 1.207 19 C 0.001 3.999 20 C 0.008 3.992 21 H 0.076 0.924 22 O -0.367 6.367 23 C -0.052 4.052 24 C -0.125 4.125 25 C -0.129 4.129 26 C -0.132 4.132 27 C -0.062 4.062 28 Cl -0.046 7.046 29 C -0.092 4.092 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.243 0.757 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.133 0.867 38 H 0.040 0.960 39 H 0.227 0.773 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.599 -0.336 21.552 23.207 hybrid contribution 0.306 0.405 -1.171 1.276 sum -8.293 0.069 20.381 22.004 Atomic orbital electron populations 1.21810 0.91795 1.03165 1.03131 1.20324 0.97897 1.00445 0.90742 0.87412 1.20380 0.80557 0.84854 0.84511 1.90739 1.37477 1.26279 1.86578 1.45820 1.52955 1.32177 1.04748 1.22132 0.94800 0.96943 0.82304 0.88341 1.21580 0.93466 0.97798 0.86651 1.44284 1.12740 1.76244 0.99002 1.19099 0.91976 1.35069 0.88263 0.90438 1.24754 0.97872 1.01859 0.96278 1.69715 1.25291 1.54206 1.08458 0.86034 0.81290 0.78291 0.79672 1.21622 1.21653 1.20697 1.22598 0.83750 0.98696 0.94851 1.23561 0.96030 0.82812 0.96841 0.92388 1.86231 1.73422 1.27862 1.49194 1.19273 0.97535 0.93500 0.94877 1.21138 0.96947 1.00342 0.94120 1.21028 1.00044 0.93972 0.97850 1.21026 0.98090 0.94890 0.99184 1.20866 1.01692 0.86084 0.97541 1.98365 1.92478 1.17609 1.96175 1.20803 0.99389 0.93917 0.95088 0.91202 0.91809 0.91205 0.75700 0.95370 0.95476 0.93733 0.86722 0.96006 0.77316 0.85365 0.85098 0.85171 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.90 37.16 0.33 -0.82 16 2 C -0.07 -0.76 2.90 -92.92 -0.27 -1.03 16 3 H 0.11 0.94 7.88 -51.93 -0.41 0.53 16 4 C 0.51 7.52 7.02 -10.99 -0.08 7.44 16 5 O -0.53 -9.93 14.83 5.56 0.08 -9.85 16 6 N -0.71 -10.46 4.98 -52.03 -0.26 -10.72 16 7 C 0.14 2.61 3.12 -66.10 -0.21 2.41 16 8 H 0.10 1.86 7.69 -51.93 -0.40 1.46 16 9 C 0.13 2.94 6.99 -3.07 -0.02 2.92 16 10 N -0.60 -15.36 3.39 -170.08 -0.58 -15.94 16 11 C -0.22 -6.07 10.27 -15.06 -0.15 -6.23 16 12 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 13 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 14 N -0.93 -26.42 10.09 55.49 0.56 -25.86 16 15 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.13 2.94 5.62 -2.53 -0.01 2.93 16 20 C 0.07 1.21 4.28 -24.58 -0.11 1.10 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 22 O -0.56 -9.15 12.23 -35.23 -0.43 -9.58 16 23 C -0.05 -0.58 4.40 -104.63 -0.46 -1.04 16 24 C -0.11 -1.05 9.67 -39.58 -0.38 -1.43 16 25 C -0.11 -1.00 10.05 -39.59 -0.40 -1.40 16 26 C -0.11 -1.12 9.83 -39.55 -0.39 -1.51 16 27 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 28 Cl -0.08 -0.83 28.96 -51.86 -1.50 -2.33 16 29 C -0.07 -0.89 7.71 -39.55 -0.31 -1.20 16 30 H 0.07 0.51 7.56 -51.93 -0.39 0.12 16 31 H 0.06 0.55 7.39 -51.93 -0.38 0.17 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.41 5.33 6.98 -40.82 -0.29 5.04 16 34 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.12 2.94 5.87 -51.93 -0.31 2.63 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.38 4.95 9.12 45.56 0.42 5.37 16 40 H 0.13 0.98 7.95 -52.49 -0.42 0.56 16 41 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.13 1.64 7.52 -52.49 -0.39 1.25 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -32.99 368.74 -9.46 -42.45 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.07 Total: 8.15 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -2.80 Total: 1.03 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.28 Total: -52.51 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.35 Total: -19.42 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.99 -9.46 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084075820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.185 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds