Wall clock time and date at job start Sat Apr 11 2020 05:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86794 * 120.00154 * 2 1 4 4 H 1.48500 * 109.46911 * 269.99523 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99738 * 3 2 1 6 6 H 1.48500 * 109.47115 * 149.99751 * 3 2 1 7 7 C 1.38632 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00707 * 180.02562 * 7 2 1 9 9 O 1.34816 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.35780 * 117.00028 * 174.95331 * 9 7 2 11 11 C 1.38742 * 120.08441 * 5.42764 * 10 9 7 12 12 C 1.38346 * 119.97146 * 180.02562 * 11 10 9 13 13 F 1.35103 * 119.92015 * 179.97438 * 12 11 10 14 14 C 1.38543 * 120.15322 * 0.02899 * 12 11 10 15 15 C 1.38192 * 120.17476 * 359.67512 * 14 12 11 16 16 C 1.38691 * 120.02078 * 0.59594 * 15 14 12 17 17 N 1.40141 * 120.07749 * 179.70315 * 16 15 14 18 18 C 1.34778 * 119.99761 * 34.59621 * 17 16 15 19 19 O 1.21592 * 120.00095 * 355.63260 * 18 17 16 20 20 N 1.34774 * 119.99645 * 175.62830 * 18 17 16 21 21 C 1.46506 * 120.00019 * 179.97438 * 20 18 17 22 22 C 1.53001 * 109.47197 * 180.02562 * 21 20 18 23 23 C 1.52995 * 109.46718 * 180.02562 * 22 21 20 24 24 O 1.42896 * 112.85719 * 53.80492 * 23 22 21 25 25 C 1.53781 * 113.61051 * 282.49309 * 23 22 21 26 26 C 1.53787 * 87.08423 * 220.02157 * 25 23 22 27 27 C 1.53783 * 113.61048 * 185.00177 * 23 22 21 28 28 H 0.97003 * 119.99571 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.01523 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.90814 * 179.97438 * 14 12 11 31 31 H 1.07999 * 119.99238 * 180.32917 * 15 14 12 32 32 H 0.96997 * 119.99667 * 214.60422 * 17 16 15 33 33 H 0.97001 * 120.00224 * 0.02562 * 20 18 17 34 34 H 1.09000 * 109.46384 * 60.00269 * 21 20 18 35 35 H 1.09000 * 109.47182 * 300.00577 * 21 20 18 36 36 H 1.09000 * 109.46922 * 300.00560 * 22 21 20 37 37 H 1.09000 * 109.46933 * 60.00415 * 22 21 20 38 38 H 0.96709 * 113.99687 * 309.66825 * 24 23 22 39 39 H 1.09003 * 113.61951 * 334.57280 * 25 23 22 40 40 H 1.09002 * 113.61512 * 105.47622 * 25 23 22 41 41 H 1.08997 * 113.61695 * 270.89018 * 26 25 23 42 42 H 1.09002 * 113.61205 * 139.97909 * 26 25 23 43 43 H 1.08998 * 113.61341 * 254.52300 * 27 23 22 44 44 H 1.08995 * 113.61913 * 25.43067 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0462 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0702 -3.5046 -0.1053 11 6 3.4560 -3.4398 -0.0940 12 6 4.2031 -4.5991 -0.2025 13 9 5.5525 -4.5347 -0.1918 14 6 3.5706 -5.8258 -0.3233 15 6 2.1906 -5.8982 -0.3292 16 6 1.4345 -4.7400 -0.2265 17 7 0.0350 -4.8114 -0.2386 18 6 -0.5910 -5.8616 0.3285 19 8 0.0583 -6.7851 0.7800 20 7 -1.9369 -5.8880 0.3952 21 6 -2.6175 -7.0298 1.0111 22 6 -4.1309 -6.8112 0.9573 23 6 -4.8415 -8.0033 1.6011 24 8 -4.3744 -8.2803 2.9228 25 6 -4.9056 -9.2446 0.6956 26 6 -6.3379 -9.4529 1.2154 27 6 -6.3740 -7.9402 1.4900 28 1 -0.4850 0.8401 -0.0004 29 1 3.9514 -2.4847 -0.0004 30 1 4.1576 -6.7283 -0.4082 31 1 1.7006 -6.8565 -0.4182 32 1 -0.4830 -4.1050 -0.6552 33 1 -2.4549 -5.1514 0.0347 34 1 -2.3004 -7.1246 2.0497 35 1 -2.3628 -7.9404 0.4689 36 1 -4.3859 -5.9005 1.4993 37 1 -4.4475 -6.7166 -0.0814 38 1 -3.4121 -8.3443 2.9945 39 1 -4.8567 -9.0121 -0.3682 40 1 -4.2153 -10.0354 0.9892 41 1 -6.3906 -10.0619 2.1179 42 1 -7.0395 -9.7738 0.4454 43 1 -6.8691 -7.6780 2.4250 44 1 -6.7266 -7.3511 0.6435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794238768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:18:58 Heat of formation + Delta-G solvation = -124.427884 kcal Electronic energy + Delta-G solvation = -28612.108584 eV Core-core repulsion = 24251.768807 eV Total energy + Delta-G solvation = -4360.339778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.81840 -41.75154 -40.79141 -40.27688 -38.13644 -36.22596 -35.55463 -35.53757 -34.30278 -31.90685 -31.02149 -29.62595 -27.39347 -26.77316 -25.87103 -24.09835 -23.31359 -22.62414 -21.93968 -20.58861 -20.14300 -19.73823 -19.21769 -18.34184 -17.52240 -17.20353 -16.96930 -16.73618 -16.58837 -16.48137 -15.97454 -15.93287 -15.82996 -15.46056 -15.33813 -15.26025 -15.03593 -14.80794 -14.43702 -14.03828 -13.76382 -13.42979 -13.37147 -13.23506 -13.00167 -12.78478 -12.58196 -12.34612 -12.24579 -12.15545 -12.02219 -11.73959 -11.65581 -11.39963 -11.10155 -10.97263 -10.82016 -10.58799 -10.16277 -9.53684 -8.74027 -8.50820 -6.16730 0.22156 0.47521 1.37572 1.44158 1.52212 1.58714 2.04662 2.14617 2.69032 3.05984 3.10427 3.14928 3.19872 3.46507 3.51100 3.66409 3.92215 3.92765 3.96467 4.13941 4.17829 4.19739 4.37612 4.49446 4.56373 4.64934 4.81946 4.86111 4.93036 4.95198 5.00951 5.03641 5.06664 5.16010 5.23465 5.30357 5.34046 5.35804 5.43371 5.48276 5.57875 5.90679 5.94692 6.08856 6.73993 6.93528 6.94234 7.45400 7.63563 8.69505 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.002623 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.096732 B =10673.032833 C =12786.387232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.008 4.008 3 Si 1.010 2.990 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.099 0.901 9 O -0.201 6.201 10 C 0.130 3.870 11 C -0.264 4.264 12 C 0.122 3.878 13 F -0.145 7.145 14 C -0.204 4.204 15 C -0.051 4.051 16 C 0.079 3.921 17 N -0.666 5.666 18 C 0.701 3.299 19 O -0.612 6.612 20 N -0.729 5.729 21 C 0.137 3.863 22 C -0.140 4.140 23 C 0.106 3.894 24 O -0.562 6.562 25 C -0.164 4.164 26 C -0.136 4.136 27 C -0.128 4.128 28 H 0.275 0.725 29 H 0.136 0.864 30 H 0.158 0.842 31 H 0.154 0.846 32 H 0.414 0.586 33 H 0.410 0.590 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.388 0.612 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.926 -13.564 -1.606 16.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.208 4.208 3 Si 0.830 3.170 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.116 0.884 9 O -0.107 6.107 10 C 0.076 3.924 11 C -0.285 4.285 12 C 0.102 3.898 13 F -0.124 7.124 14 C -0.223 4.223 15 C -0.071 4.071 16 C -0.017 4.017 17 N -0.313 5.313 18 C 0.402 3.598 19 O -0.493 6.493 20 N -0.385 5.385 21 C 0.014 3.986 22 C -0.178 4.178 23 C 0.064 3.936 24 O -0.370 6.370 25 C -0.202 4.202 26 C -0.173 4.173 27 C -0.165 4.165 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.250 0.750 33 H 0.246 0.754 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.238 0.762 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.437 -14.206 -1.014 17.657 hybrid contribution 0.898 1.688 -0.221 1.925 sum -9.539 -12.518 -1.235 15.787 Atomic orbital electron populations 1.70116 1.07470 1.28932 1.47581 1.26350 0.96838 1.02030 0.95550 0.84689 0.77850 0.75184 0.79243 1.18797 1.19566 1.18328 1.21744 0.92524 0.81182 1.53758 0.88406 1.83912 1.34627 1.11769 1.80351 1.19179 0.90153 0.87459 0.95587 1.20922 0.93338 0.99073 1.15165 1.17460 0.76224 0.94249 1.01905 1.91428 1.29512 1.97355 1.94068 1.20883 0.94553 0.96462 1.10436 1.20868 0.92459 0.97262 0.96529 1.16900 0.82609 0.91217 1.10984 1.42205 1.04565 1.24950 1.59602 1.16016 0.82896 0.82327 0.78550 1.90840 1.65616 1.37928 1.54919 1.44978 1.03487 1.25330 1.64753 1.21226 0.91701 0.88002 0.97690 1.22298 0.92425 0.99529 1.03518 1.22256 0.95402 0.93242 0.82676 1.86453 1.28423 1.93918 1.28218 1.23666 0.97940 0.98041 1.00521 1.22745 0.97102 0.96116 1.01339 1.23114 0.92748 0.97720 1.02931 0.91631 0.84661 0.82456 0.82857 0.75017 0.75355 0.92452 0.91185 0.90451 0.88028 0.76173 0.87991 0.91309 0.90885 0.90006 0.91552 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.17 13.67 21.61 0.30 -49.87 16 2 C -0.01 -0.42 5.49 84.82 0.47 0.05 16 3 Si 1.01 40.41 29.55 68.60 2.03 42.43 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.42 -22.44 9.49 67.91 0.64 -21.80 16 8 H 0.10 4.97 5.20 -2.91 -0.02 4.96 16 9 O -0.20 -10.80 9.32 -22.93 -0.21 -11.02 16 10 C 0.13 6.07 6.66 22.68 0.15 6.23 16 11 C -0.26 -11.56 9.14 22.42 0.20 -11.36 16 12 C 0.12 4.68 7.29 22.37 0.16 4.84 16 13 F -0.14 -5.27 17.26 44.97 0.78 -4.49 16 14 C -0.20 -7.03 10.02 22.33 0.22 -6.80 16 15 C -0.05 -1.86 8.70 22.37 0.19 -1.67 16 16 C 0.08 3.23 6.33 38.21 0.24 3.48 16 17 N -0.67 -24.20 5.20 -316.70 -1.65 -25.84 16 18 C 0.70 23.35 8.41 179.05 1.51 24.86 16 19 O -0.61 -23.42 13.76 -4.01 -0.06 -23.48 16 20 N -0.73 -17.47 5.56 -478.52 -2.66 -20.13 16 21 C 0.14 2.65 5.24 86.38 0.45 3.10 16 22 C -0.14 -1.97 4.96 30.59 0.15 -1.82 16 23 C 0.11 1.58 1.38 -10.27 -0.01 1.57 16 24 O -0.56 -10.59 13.39 -148.98 -1.99 -12.58 16 25 C -0.16 -2.12 7.32 31.12 0.23 -1.89 16 26 C -0.14 -1.73 8.02 31.12 0.25 -1.48 16 27 C -0.13 -1.70 7.47 31.12 0.23 -1.47 16 28 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.14 6.01 5.64 -2.91 -0.02 6.00 16 30 H 0.16 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.15 5.40 6.19 -2.91 -0.02 5.38 16 32 H 0.41 14.46 8.59 -92.71 -0.80 13.67 16 33 H 0.41 8.12 8.49 -92.71 -0.79 7.33 16 34 H 0.06 1.21 6.75 -2.39 -0.02 1.20 16 35 H 0.07 1.35 8.05 -2.39 -0.02 1.33 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.09 8.05 -2.39 -0.02 1.07 16 38 H 0.39 5.77 7.18 -74.05 -0.53 5.24 16 39 H 0.10 1.06 8.04 -2.39 -0.02 1.04 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.11 1.08 8.10 -2.39 -0.02 1.06 16 Total: -1.00 -67.22 372.31 0.60 -66.62 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: -1.03 Total: 42.54 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 5.10 Total: -4.18 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -4.01 Total: -95.84 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -2.26 Total: -47.08 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.78 Total: -4.49 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.43 kcal Total: -67.22 0.60 -66.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794238768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.808 kcal (2) G-P(sol) polarization free energy of solvation -67.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds