Wall clock time and date at job start Sat Apr 11 2020 05:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99585 * 2 1 4 4 H 1.48498 * 109.47031 * 269.99501 * 3 2 1 5 5 H 1.48492 * 109.47388 * 30.00031 * 3 2 1 6 6 H 1.48505 * 109.46919 * 149.99968 * 3 2 1 7 7 C 1.37878 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00068 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.34725 * 125.26426 * 125.00337 * 10 9 7 12 12 C 1.36705 * 108.05512 * 179.69503 * 11 10 9 13 13 C 1.47470 * 126.68348 * 180.25689 * 12 11 10 14 14 N 1.29800 * 120.00353 * 185.31468 * 13 12 11 15 15 N 1.40101 * 120.00012 * 180.02562 * 14 13 12 16 16 C 1.39460 * 119.99714 * 180.02562 * 15 14 13 17 17 N 1.33711 * 125.62148 * 359.68904 * 16 15 14 18 18 C 1.30839 * 109.77199 * 179.86060 * 17 16 15 19 19 N 1.34377 * 108.23414 * 0.40058 * 18 17 16 20 20 H 0.97001 * 126.75637 * 179.78828 * 19 18 17 21 21 N 1.31269 * 125.61780 * 180.02562 * 16 15 14 22 22 C 1.46471 * 106.64124 * 0.42981 * 12 11 10 23 23 C 1.48208 * 126.49056 * 179.82860 * 22 12 11 24 24 C 1.39849 * 120.91118 * 224.43952 * 23 22 12 25 25 C 1.37939 * 119.01233 * 180.02562 * 24 23 22 26 26 N 1.31948 * 120.88527 * 0.02741 * 25 24 23 27 27 C 1.31948 * 122.02310 * 359.97311 * 26 25 24 28 28 C 1.37936 * 120.88673 * 0.02562 * 27 26 25 29 29 N 1.31587 * 107.01998 * 359.56631 * 22 12 11 30 30 H 0.96997 * 119.99851 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46990 * 60.00277 * 9 7 2 32 32 H 1.08999 * 109.47290 * 300.00093 * 9 7 2 33 33 H 1.07999 * 125.97351 * 0.02562 * 11 10 9 34 34 H 1.08005 * 119.99827 * 5.31327 * 13 12 11 35 35 H 0.97001 * 120.00009 * 359.97438 * 15 14 13 36 36 H 1.08004 * 125.88159 * 180.16114 * 18 17 16 37 37 H 1.07998 * 120.49088 * 0.02562 * 24 23 22 38 38 H 1.08000 * 119.55524 * 180.02562 * 25 24 23 39 39 H 1.07993 * 119.55252 * 179.97438 * 27 26 25 40 40 H 1.07994 * 120.49070 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5751 0.0001 11 6 4.8538 -3.0983 -0.9012 12 6 5.0759 -4.4048 -0.5657 13 6 5.9488 -5.3599 -1.2732 14 7 5.9860 -6.6031 -0.9019 15 7 6.8158 -7.5103 -1.5738 16 6 6.8553 -8.8461 -1.1752 17 7 6.1563 -9.3792 -0.1676 18 6 6.4268 -10.6554 -0.0678 19 7 7.3243 -10.9705 -1.0170 20 1 7.7122 -11.8441 -1.1820 21 7 7.5896 -9.7861 -1.7233 22 6 4.2748 -4.6727 0.6308 23 6 4.1867 -5.9582 1.3630 24 6 2.9528 -6.4582 1.7910 25 6 2.9163 -7.6585 2.4698 26 7 4.0244 -8.3311 2.7163 27 6 5.2083 -7.8948 2.3302 28 6 5.3354 -6.7040 1.6459 29 7 3.6524 -3.5541 0.9360 30 1 -0.4850 0.8400 -0.0004 31 1 3.8752 -0.6795 0.8895 32 1 3.8746 -0.6807 -0.8905 33 1 5.2911 -2.5754 -1.7389 34 1 6.5572 -5.0250 -2.1004 35 1 7.3621 -7.2094 -2.3167 36 1 6.0047 -11.3373 0.6556 37 1 2.0420 -5.9127 1.5930 38 1 1.9681 -8.0530 2.8039 39 1 6.0896 -8.4776 2.5537 40 1 6.3076 -6.3531 1.3325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807996712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:24 Heat of formation + Delta-G solvation = 265.457214 kcal Electronic energy + Delta-G solvation = -27653.099258 eV Core-core repulsion = 23701.480550 eV Total energy + Delta-G solvation = -3951.618708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.04538 -40.55948 -39.28194 -37.12766 -34.25477 -33.24374 -32.72832 -31.95046 -31.10039 -30.75758 -30.38892 -28.97062 -27.31634 -24.05277 -23.31238 -23.11595 -22.87066 -21.64025 -20.86151 -20.06121 -19.34612 -18.46189 -17.31428 -17.10778 -16.41040 -16.28452 -15.70244 -15.60481 -15.52864 -15.13789 -14.60102 -14.56833 -14.02188 -13.70089 -13.43169 -13.27221 -13.14172 -12.96261 -12.55963 -12.41344 -12.14348 -12.13140 -11.28890 -11.19341 -10.86678 -10.74868 -10.53550 -10.36865 -10.11027 -10.03368 -9.95213 -9.67954 -9.37769 -9.08656 -8.85387 -8.79796 -8.56599 -8.36346 -7.34508 -6.30688 -4.34593 1.31202 1.52169 1.68706 1.83957 2.00763 2.71246 2.93448 3.06633 3.07777 3.12659 3.15742 3.24972 3.51883 4.15669 4.17313 4.36200 4.62641 4.79988 4.87346 4.88550 4.99490 5.05365 5.28920 5.34991 5.57040 5.59985 5.68975 5.80388 5.94005 6.04002 6.11120 6.20368 6.25380 6.30027 6.41777 6.52279 6.78594 6.92239 6.95259 7.10582 7.15457 7.20522 7.48136 7.82072 8.18013 8.28195 8.42346 8.46880 8.77992 9.22818 10.81730 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.002809 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.412488 B = 9967.250235 C =11083.780509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.079 3.921 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.087 0.913 9 C 0.227 3.773 10 N -0.318 5.318 11 C 0.094 3.906 12 C -0.218 4.218 13 C 0.153 3.847 14 N -0.225 5.225 15 N -0.550 5.550 16 C 0.504 3.496 17 N -0.530 5.530 18 C 0.279 3.721 19 N -0.489 5.489 20 H 0.439 0.561 21 N -0.372 5.372 22 C 0.111 3.889 23 C 0.046 3.954 24 C -0.150 4.150 25 C 0.087 3.913 26 N -0.489 5.489 27 C 0.118 3.882 28 C -0.098 4.098 29 N -0.245 5.245 30 H 0.269 0.731 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.179 0.821 34 H 0.114 0.886 35 H 0.396 0.604 36 H 0.222 0.778 37 H 0.132 0.868 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.790 -17.315 -1.786 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.126 4.126 3 Si 0.698 3.302 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.105 0.895 9 C 0.108 3.892 10 N -0.095 5.095 11 C -0.060 4.060 12 C -0.234 4.234 13 C -0.059 4.059 14 N -0.031 5.031 15 N -0.282 5.282 16 C 0.134 3.866 17 N -0.262 5.262 18 C -0.021 4.021 19 N -0.208 5.208 20 H 0.285 0.715 21 N -0.212 5.212 22 C -0.057 4.057 23 C 0.036 3.964 24 C -0.171 4.171 25 C -0.070 4.070 26 N -0.199 5.199 27 C -0.039 4.039 28 C -0.120 4.120 29 N -0.065 5.065 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.196 0.804 34 H 0.131 0.869 35 H 0.236 0.764 36 H 0.238 0.762 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.545 -17.575 -0.228 22.814 hybrid contribution 1.644 1.382 -2.293 3.141 sum 16.188 -16.193 -2.521 23.035 Atomic orbital electron populations 1.69864 1.06166 1.27441 1.48547 1.24819 0.94862 0.98778 0.94126 0.86925 0.80460 0.83900 0.78919 1.19683 1.20439 1.18838 1.21048 0.87476 0.95856 1.53327 0.89492 1.20183 0.97812 0.72576 0.98600 1.48869 1.31264 1.11355 1.18059 1.22478 0.94357 0.93460 0.95663 1.18933 1.09692 0.92945 1.01783 1.23375 0.96055 0.89828 0.96636 1.75145 1.09378 1.01191 1.17389 1.43947 1.46381 1.02301 1.35603 1.19677 0.91197 0.85496 0.90246 1.70469 1.28167 1.06498 1.21096 1.26094 0.89930 0.93237 0.92831 1.47759 1.36005 1.10460 1.26608 0.71525 1.78197 1.28952 0.91575 1.22478 1.21781 0.96443 0.92697 0.94790 1.17899 0.93548 0.90394 0.94580 1.22171 0.98070 0.97533 0.99337 1.22430 0.96677 0.91732 0.96128 1.67516 0.98759 1.33778 1.19800 1.22169 0.94712 0.92873 0.94149 1.21773 0.98238 0.95274 0.96708 1.77636 1.19752 0.96179 1.12977 0.92039 0.93548 0.93131 0.80404 0.86871 0.76379 0.76203 0.84983 0.83394 0.84059 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.70 13.96 55.43 0.77 -24.92 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 19.21 27.47 -169.99 -4.67 14.54 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.26 -5.45 6.54 56.52 0.37 -5.08 16 7 C -0.54 -14.41 9.77 -34.44 -0.34 -14.75 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 9 C 0.23 4.92 5.29 -5.19 -0.03 4.89 16 10 N -0.32 -6.43 3.64 -62.23 -0.23 -6.66 16 11 C 0.09 1.48 11.34 -16.84 -0.19 1.29 16 12 C -0.22 -3.48 6.24 -103.38 -0.64 -4.12 16 13 C 0.15 1.98 10.93 -14.65 -0.16 1.82 16 14 N -0.22 -3.17 7.39 32.16 0.24 -2.93 16 15 N -0.55 -6.88 6.47 29.99 0.19 -6.69 16 16 C 0.50 6.58 9.07 -321.23 -2.91 3.66 16 17 N -0.53 -6.65 10.10 -14.99 -0.15 -6.80 16 18 C 0.28 2.26 13.12 -90.69 -1.19 1.08 16 19 N -0.49 -3.73 7.44 29.52 0.22 -3.51 16 20 H 0.44 1.61 8.96 -182.34 -1.63 -0.02 16 21 N -0.37 -4.36 12.82 29.98 0.38 -3.98 16 22 C 0.11 2.09 6.92 -80.56 -0.56 1.53 16 23 C 0.05 0.80 5.50 -104.60 -0.57 0.22 16 24 C -0.15 -2.50 9.89 -39.09 -0.39 -2.88 16 25 C 0.09 1.29 11.17 -17.61 -0.20 1.09 16 26 N -0.49 -7.34 10.35 -13.35 -0.14 -7.48 16 27 C 0.12 1.68 10.19 -17.61 -0.18 1.50 16 28 C -0.10 -1.52 7.67 -39.09 -0.30 -1.82 16 29 N -0.24 -5.28 12.34 34.56 0.43 -4.86 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.05 1.01 7.20 -51.93 -0.37 0.64 16 32 H 0.05 0.97 7.48 -51.93 -0.39 0.58 16 33 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.11 1.04 8.02 -52.48 -0.42 0.61 16 35 H 0.40 3.95 8.78 -182.60 -1.60 2.35 16 36 H 0.22 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.12 1.89 6.97 -52.49 -0.37 1.53 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -35.57 359.36 -11.78 -47.35 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.49 Total: 4.98 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -7.76 Total: -4.47 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: 1.72 Total: -67.82 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.67 Total: 14.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.57 -11.78 -47.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807996712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 312.809 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 277.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 265.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds