Wall clock time and date at job start Sat Apr 11 2020 05:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99585 * 2 1 4 4 H 1.48498 * 109.47031 * 269.99501 * 3 2 1 5 5 H 1.48492 * 109.47388 * 30.00031 * 3 2 1 6 6 H 1.48505 * 109.46919 * 149.99968 * 3 2 1 7 7 C 1.37878 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00068 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.34725 * 125.26426 * 125.00337 * 10 9 7 12 12 C 1.36705 * 108.05512 * 179.69503 * 11 10 9 13 13 C 1.47470 * 126.68348 * 180.25689 * 12 11 10 14 14 N 1.29800 * 120.00353 * 185.31468 * 13 12 11 15 15 N 1.40101 * 120.00012 * 180.02562 * 14 13 12 16 16 C 1.39460 * 119.99714 * 180.02562 * 15 14 13 17 17 N 1.33711 * 125.62148 * 359.68904 * 16 15 14 18 18 C 1.30839 * 109.77199 * 179.86060 * 17 16 15 19 19 N 1.34377 * 108.23414 * 0.40058 * 18 17 16 20 20 H 0.97001 * 126.75637 * 179.78828 * 19 18 17 21 21 N 1.31269 * 125.61780 * 180.02562 * 16 15 14 22 22 C 1.46471 * 106.64124 * 0.42981 * 12 11 10 23 23 C 1.48208 * 126.49056 * 179.82860 * 22 12 11 24 24 C 1.39849 * 120.91118 * 224.43952 * 23 22 12 25 25 C 1.37939 * 119.01233 * 180.02562 * 24 23 22 26 26 N 1.31948 * 120.88527 * 0.02741 * 25 24 23 27 27 C 1.31948 * 122.02310 * 359.97311 * 26 25 24 28 28 C 1.37936 * 120.88673 * 0.02562 * 27 26 25 29 29 N 1.31587 * 107.01998 * 359.56631 * 22 12 11 30 30 H 0.96997 * 119.99851 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46990 * 60.00277 * 9 7 2 32 32 H 1.08999 * 109.47290 * 300.00093 * 9 7 2 33 33 H 1.07999 * 125.97351 * 0.02562 * 11 10 9 34 34 H 1.08005 * 119.99827 * 5.31327 * 13 12 11 35 35 H 0.97001 * 120.00009 * 359.97438 * 15 14 13 36 36 H 1.08004 * 125.88159 * 180.16114 * 18 17 16 37 37 H 1.07998 * 120.49088 * 0.02562 * 24 23 22 38 38 H 1.08000 * 119.55524 * 180.02562 * 25 24 23 39 39 H 1.07993 * 119.55252 * 179.97438 * 27 26 25 40 40 H 1.07994 * 120.49070 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 7 4.0000 -2.5751 0.0001 11 6 4.8538 -3.0983 -0.9012 12 6 5.0759 -4.4048 -0.5657 13 6 5.9488 -5.3599 -1.2732 14 7 5.9860 -6.6031 -0.9019 15 7 6.8158 -7.5103 -1.5738 16 6 6.8553 -8.8461 -1.1752 17 7 6.1563 -9.3792 -0.1676 18 6 6.4268 -10.6554 -0.0678 19 7 7.3243 -10.9705 -1.0170 20 1 7.7122 -11.8441 -1.1820 21 7 7.5896 -9.7861 -1.7233 22 6 4.2748 -4.6727 0.6308 23 6 4.1867 -5.9582 1.3630 24 6 2.9528 -6.4582 1.7910 25 6 2.9163 -7.6585 2.4698 26 7 4.0244 -8.3311 2.7163 27 6 5.2083 -7.8948 2.3302 28 6 5.3354 -6.7040 1.6459 29 7 3.6524 -3.5541 0.9360 30 1 -0.4850 0.8400 -0.0004 31 1 3.8752 -0.6795 0.8895 32 1 3.8746 -0.6807 -0.8905 33 1 5.2911 -2.5754 -1.7389 34 1 6.5572 -5.0250 -2.1004 35 1 7.3621 -7.2094 -2.3167 36 1 6.0047 -11.3373 0.6556 37 1 2.0420 -5.9127 1.5930 38 1 1.9681 -8.0530 2.8039 39 1 6.0896 -8.4776 2.5537 40 1 6.3076 -6.3531 1.3325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807996712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:23 Heat of formation + Delta-G solvation = 242.907486 kcal Electronic energy + Delta-G solvation = -27654.077087 eV Core-core repulsion = 23701.480550 eV Total energy + Delta-G solvation = -3952.596537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.79133 -41.90352 -40.51276 -38.10394 -35.79474 -34.56920 -34.06744 -32.79775 -32.57801 -31.93126 -31.50682 -30.18107 -28.81674 -25.52757 -24.56900 -24.17599 -23.79136 -23.02990 -21.75588 -21.32821 -20.58650 -19.16796 -19.08409 -18.42968 -17.43401 -17.29192 -16.99461 -16.82824 -16.50704 -16.37151 -16.17061 -15.58273 -15.26040 -14.92940 -14.78309 -14.53622 -14.44983 -14.23287 -14.01264 -13.78600 -13.51480 -12.98011 -12.88766 -12.55449 -12.42368 -12.16996 -11.85444 -11.66995 -11.55762 -11.20989 -10.88652 -10.84041 -10.81989 -10.62322 -10.30585 -10.00376 -9.76400 -9.58613 -8.47542 -8.35692 -6.46768 0.12943 0.46410 0.53640 0.94804 1.17459 1.37274 1.40909 1.41687 1.50282 1.76555 2.13435 2.30360 2.34085 2.45548 2.96811 3.14401 3.36605 3.50885 3.74945 3.78740 4.05250 4.16509 4.18100 4.29784 4.32586 4.40657 4.46268 4.67467 4.70115 4.82889 4.90269 4.96923 5.06415 5.12195 5.26359 5.26958 5.42391 5.54082 5.68212 5.94157 5.94936 6.24778 6.33279 6.42562 6.59277 6.86045 7.02852 7.16071 7.21786 7.62587 8.81223 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.002809 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.412488 B = 9967.250235 C =11083.780509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.250 1.250 5 H -0.286 1.286 6 H -0.236 1.236 7 C -0.547 4.547 8 H 0.025 0.975 9 C 0.235 3.765 10 N -0.344 5.344 11 C 0.104 3.896 12 C -0.217 4.217 13 C 0.151 3.849 14 N -0.244 5.244 15 N -0.548 5.548 16 C 0.484 3.516 17 N -0.572 5.572 18 C 0.292 3.708 19 N -0.473 5.473 20 H 0.457 0.543 21 N -0.391 5.391 22 C 0.102 3.898 23 C 0.027 3.973 24 C -0.171 4.171 25 C 0.091 3.909 26 N -0.490 5.490 27 C 0.128 3.872 28 C -0.092 4.092 29 N -0.307 5.307 30 H 0.271 0.729 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.231 0.769 34 H 0.158 0.842 35 H 0.406 0.594 36 H 0.264 0.736 37 H 0.114 0.886 38 H 0.174 0.826 39 H 0.167 0.833 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.135 -18.043 -2.633 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.175 1.175 5 H -0.211 1.211 6 H -0.159 1.159 7 C -0.585 4.585 8 H 0.044 0.956 9 C 0.115 3.885 10 N -0.123 5.123 11 C -0.047 4.047 12 C -0.233 4.233 13 C -0.060 4.060 14 N -0.051 5.051 15 N -0.281 5.281 16 C 0.114 3.886 17 N -0.306 5.306 18 C -0.007 4.007 19 N -0.194 5.194 20 H 0.306 0.694 21 N -0.232 5.232 22 C -0.066 4.066 23 C 0.017 3.983 24 C -0.192 4.192 25 C -0.065 4.065 26 N -0.200 5.200 27 C -0.029 4.029 28 C -0.113 4.113 29 N -0.127 5.127 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.247 0.753 34 H 0.175 0.825 35 H 0.248 0.752 36 H 0.280 0.720 37 H 0.132 0.868 38 H 0.191 0.809 39 H 0.184 0.816 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 17.939 -18.381 -1.094 25.708 hybrid contribution 0.606 1.281 -2.018 2.466 sum 18.546 -17.100 -3.113 25.417 Atomic orbital electron populations 1.70060 1.08713 1.28781 1.50666 1.25939 0.95723 1.03623 0.93243 0.85626 0.79548 0.77102 0.80147 1.17457 1.21139 1.15933 1.21221 0.90612 0.93664 1.53048 0.95643 1.19982 0.94083 0.74251 1.00153 1.48688 1.33215 1.10861 1.19514 1.23293 0.92514 0.93440 0.95456 1.19271 1.09381 0.93806 1.00798 1.23436 0.95992 0.89160 0.97454 1.75018 1.09811 1.01976 1.18247 1.43825 1.46284 1.02184 1.35831 1.19905 0.91952 0.85774 0.90957 1.70426 1.29585 1.08575 1.21976 1.26843 0.88720 0.92581 0.92600 1.47681 1.35594 1.10318 1.25854 0.69378 1.78096 1.29203 0.92523 1.23397 1.22245 0.96147 0.92405 0.95821 1.18102 0.94424 0.90427 0.95308 1.22178 0.97523 0.98637 1.00911 1.22767 0.97834 0.90828 0.95093 1.67622 0.98909 1.33606 1.19848 1.22524 0.95273 0.92345 0.92782 1.21757 0.97518 0.95380 0.96684 1.77535 1.22185 0.97741 1.15280 0.91954 0.93497 0.89197 0.75301 0.82524 0.75201 0.72026 0.86786 0.80920 0.81629 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.51 13.96 21.45 0.30 -57.22 16 2 C 0.01 0.75 5.47 84.65 0.46 1.21 16 3 Si 0.96 39.25 27.47 68.60 1.88 41.14 16 4 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.29 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.24 -8.61 6.54 99.48 0.65 -7.96 16 7 C -0.55 -30.52 9.77 25.60 0.25 -30.27 16 8 H 0.03 1.68 8.06 -2.92 -0.02 1.65 16 9 C 0.23 10.06 5.29 85.63 0.45 10.51 16 10 N -0.34 -14.01 3.64 -350.81 -1.28 -15.29 16 11 C 0.10 3.10 11.34 83.89 0.95 4.05 16 12 C -0.22 -6.76 6.24 -19.06 -0.12 -6.87 16 13 C 0.15 3.61 10.93 87.43 0.96 4.56 16 14 N -0.24 -6.55 7.39 -52.15 -0.39 -6.94 16 15 N -0.55 -12.83 6.47 -59.03 -0.38 -13.21 16 16 C 0.48 11.88 9.07 260.93 2.37 14.24 16 17 N -0.57 -13.23 10.10 -201.34 -2.03 -15.27 16 18 C 0.29 3.88 13.12 180.37 2.37 6.24 16 19 N -0.47 -5.98 7.44 -60.51 -0.45 -6.43 16 20 H 0.46 2.02 8.96 -213.10 -1.91 0.11 16 21 N -0.39 -8.46 12.82 -59.06 -0.76 -9.21 16 22 C 0.10 3.96 6.92 43.98 0.30 4.27 16 23 C 0.03 0.98 5.50 -19.85 -0.11 0.87 16 24 C -0.17 -5.99 9.89 22.59 0.22 -5.77 16 25 C 0.09 2.69 11.17 84.60 0.95 3.63 16 26 N -0.49 -14.08 10.35 -196.16 -2.03 -16.11 16 27 C 0.13 3.46 10.19 84.60 0.86 4.32 16 28 C -0.09 -2.79 7.67 22.59 0.17 -2.62 16 29 N -0.31 -13.92 12.34 -44.57 -0.55 -14.47 16 30 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.05 1.99 7.20 -2.39 -0.02 1.97 16 32 H 0.09 3.15 7.48 -2.39 -0.02 3.13 16 33 H 0.23 4.08 8.06 -2.91 -0.02 4.06 16 34 H 0.16 2.27 8.02 -2.91 -0.02 2.25 16 35 H 0.41 7.37 8.78 -213.32 -1.87 5.50 16 36 H 0.26 0.80 8.06 -2.91 -0.02 0.77 16 37 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 38 H 0.17 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 40 H 0.13 3.76 6.97 -2.91 -0.02 3.74 16 Total: -1.00 -84.61 359.36 1.70 -82.92 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -2.71 Total: 21.70 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 10.09 Total: 8.39 kcal Atomic # 7 Polarization: -146.58 SS G_CDS: -7.57 Total: -154.14 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 1.88 Total: 41.14 kcal Total: -84.61 1.70 -82.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807996712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 325.823 kcal (2) G-P(sol) polarization free energy of solvation -84.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 241.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 242.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds