Wall clock time and date at job start Sat Apr 11 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37953 * 120.05271 * 2 1 4 4 F 1.35099 * 119.84650 * 0.02562 * 3 2 1 5 5 C 1.38757 * 120.31079 * 180.27980 * 3 2 1 6 6 C 1.38001 * 120.41070 * 359.76518 * 5 3 2 7 7 C 1.38892 * 120.09902 * 0.02562 * 6 5 3 8 8 N 1.38962 * 120.15846 * 180.02562 * 7 6 5 9 9 C 1.39783 * 120.05529 * 179.79468 * 2 1 3 10 10 C 1.47291 * 120.20159 * 359.96982 * 9 2 1 11 11 O 1.21529 * 120.00331 * 269.73227 * 10 9 2 12 12 O 1.34773 * 120.00139 * 89.72627 * 10 9 2 13 13 C 1.45198 * 117.00050 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.47499 * 30.00289 * 13 12 10 15 15 C 1.53007 * 109.46915 * 270.00185 * 13 12 10 16 16 C 1.50698 * 109.46801 * 150.00517 * 13 12 10 17 17 O 1.21283 * 120.00426 * 8.56617 * 16 13 12 18 18 N 1.34773 * 119.99655 * 188.56425 * 16 13 12 19 19 C 1.46503 * 120.00488 * 4.58470 * 18 16 13 20 20 C 1.46513 * 119.99887 * 184.58195 * 18 16 13 21 21 C 1.50702 * 109.46847 * 90.00226 * 20 18 16 22 22 H 1.07997 * 119.99990 * 0.02562 * 21 20 18 23 23 C 1.37880 * 119.99690 * 179.97438 * 21 20 18 24 24 N 1.31512 * 119.99785 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99797 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47366 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47304 * 120.00341 * 25 23 21 28 28 H 1.48507 * 109.47115 * 240.00237 * 25 23 21 29 29 H 1.08999 * 109.46861 * 270.20813 * 1 2 3 30 30 H 1.09006 * 109.46903 * 30.21108 * 1 2 3 31 31 H 1.09001 * 109.46657 * 150.20744 * 1 2 3 32 32 H 1.07992 * 119.79585 * 179.74323 * 5 3 2 33 33 H 1.08000 * 119.95521 * 179.97438 * 6 5 3 34 34 H 0.96997 * 120.00155 * 179.97438 * 8 7 6 35 35 H 0.97002 * 119.99530 * 359.97438 * 8 7 6 36 36 H 1.08998 * 109.46733 * 67.16063 * 15 13 12 37 37 H 1.09000 * 109.46863 * 187.15348 * 15 13 12 38 38 H 1.08998 * 109.47357 * 307.15615 * 15 13 12 39 39 H 1.09003 * 109.46601 * 86.11618 * 19 18 16 40 40 H 1.08993 * 109.46933 * 206.11538 * 19 18 16 41 41 H 1.08999 * 109.46518 * 326.11828 * 19 18 16 42 42 H 1.08995 * 109.46654 * 210.00177 * 20 18 16 43 43 H 1.08998 * 109.46632 * 330.00331 * 20 18 16 44 44 H 0.97000 * 119.99596 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1941 0.0000 4 9 1.5204 2.3629 0.0005 5 6 3.5855 1.2003 -0.0058 6 6 4.2894 0.0133 -0.0069 7 6 3.6111 -1.1987 -0.0025 8 7 4.3187 -2.3947 -0.0030 9 6 2.2071 -1.2099 0.0043 10 6 1.4764 -2.4887 0.0096 11 8 1.1797 -3.0148 1.0642 12 8 1.1367 -3.0756 -1.1551 13 6 0.4172 -4.3341 -1.0740 14 1 -0.1819 -4.3521 -0.1636 15 6 1.4167 -5.4923 -1.0498 16 6 -0.4857 -4.4747 -2.2723 17 8 -0.4079 -3.6816 -3.1866 18 7 -1.3796 -5.4818 -2.3280 19 6 -1.5440 -6.3796 -1.1821 20 6 -2.1870 -5.6786 -3.5346 21 6 -1.4634 -6.6050 -4.4776 22 1 -0.4988 -7.0071 -4.2053 23 6 -2.0333 -6.9398 -5.6877 24 7 -3.2082 -6.4504 -6.0190 25 14 -1.1367 -8.0886 -6.8563 26 1 0.1569 -8.4980 -6.2527 27 1 -1.9700 -9.2925 -7.1035 28 1 -0.8842 -7.3889 -8.1416 29 1 -0.3633 0.0037 1.0277 30 1 -0.3633 0.8881 -0.5171 31 1 -0.3633 -0.8919 -0.5106 32 1 4.1178 2.1399 -0.0100 33 1 5.3693 0.0268 -0.0118 34 1 3.8427 -3.2398 0.0004 35 1 5.2886 -2.3843 -0.0067 36 1 1.9846 -5.4628 -0.1199 37 1 0.8788 -6.4379 -1.1170 38 1 2.0988 -5.4014 -1.8951 39 1 -2.2580 -5.9471 -0.4812 40 1 -1.9132 -7.3453 -1.5273 41 1 -0.5832 -6.5143 -0.6854 42 1 -3.1475 -6.1157 -3.2616 43 1 -2.3506 -4.7180 -4.0230 44 1 -3.6093 -6.6863 -6.8701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830409127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:59 Heat of formation + Delta-G solvation = -155.017087 kcal Electronic energy + Delta-G solvation = -29624.049464 eV Core-core repulsion = 25262.383239 eV Total energy + Delta-G solvation = -4361.666225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.77307 -42.18676 -40.86314 -39.85724 -37.64664 -36.72963 -35.93035 -34.90576 -33.83021 -32.97134 -30.19300 -29.62897 -28.12023 -27.68508 -26.26486 -25.51160 -24.02452 -22.59968 -22.04828 -20.49877 -19.59247 -18.88490 -18.70602 -18.38934 -17.84320 -17.79540 -17.27787 -17.00166 -16.67474 -16.61745 -16.32106 -16.15129 -15.97853 -15.03398 -14.81528 -14.57921 -14.55041 -14.33176 -14.17884 -14.08608 -13.90366 -13.76019 -13.67159 -13.62508 -13.33156 -13.15074 -13.06202 -12.87953 -12.65600 -12.55307 -12.38755 -12.21432 -12.01351 -11.74663 -11.67286 -11.39647 -10.67055 -10.66043 -10.08019 -9.54030 -8.62025 -8.24164 -6.39123 -0.15032 0.24211 0.74857 1.24334 1.37239 1.39694 1.50798 1.57187 2.27301 2.40678 2.46291 2.67442 3.06259 3.29234 3.35047 3.45480 3.54787 3.70559 3.77901 3.78782 4.11265 4.20709 4.28225 4.39152 4.47045 4.52635 4.56693 4.63338 4.69900 4.82379 4.87807 4.90337 4.95411 5.06559 5.10434 5.13678 5.15624 5.19662 5.50099 5.68222 5.76614 6.01719 6.20053 6.36879 6.57734 6.70111 6.70593 7.17682 7.34384 8.83764 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.002713 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.388580 B =10319.017381 C =10556.737654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.043 4.043 3 C 0.016 3.984 4 F -0.145 7.145 5 C -0.064 4.064 6 C -0.167 4.167 7 C 0.257 3.743 8 N -0.851 5.851 9 C -0.202 4.202 10 C 0.528 3.472 11 O -0.509 6.509 12 O -0.335 6.335 13 C 0.076 3.924 14 H 0.121 0.879 15 C -0.166 4.166 16 C 0.500 3.500 17 O -0.578 6.578 18 N -0.599 5.599 19 C 0.060 3.940 20 C 0.258 3.742 21 C -0.543 4.543 22 H 0.059 0.941 23 C 0.007 3.993 24 N -0.929 5.929 25 Si 0.970 3.030 26 H -0.263 1.263 27 H -0.270 1.270 28 H -0.284 1.284 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.398 0.602 35 H 0.422 0.578 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.030 0.970 43 H -0.002 1.002 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.437 8.854 17.840 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.045 4.045 3 C -0.005 4.005 4 F -0.124 7.124 5 C -0.083 4.083 6 C -0.189 4.189 7 C 0.147 3.853 8 N -0.389 5.389 9 C -0.209 4.209 10 C 0.371 3.629 11 O -0.397 6.397 12 O -0.251 6.251 13 C 0.018 3.982 14 H 0.139 0.861 15 C -0.223 4.223 16 C 0.286 3.714 17 O -0.458 6.458 18 N -0.331 5.331 19 C -0.082 4.082 20 C 0.138 3.862 21 C -0.582 4.582 22 H 0.078 0.922 23 C -0.192 4.192 24 N -0.568 5.568 25 Si 0.794 3.206 26 H -0.187 1.187 27 H -0.195 1.195 28 H -0.210 1.210 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.191 0.809 33 H 0.198 0.802 34 H 0.226 0.774 35 H 0.255 0.745 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.048 0.952 43 H 0.016 0.984 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.199 9.088 17.540 26.192 hybrid contribution -0.511 -0.707 -1.009 1.334 sum 16.688 8.381 16.530 24.939 Atomic orbital electron populations 1.20868 0.90235 1.03406 1.03726 1.19663 0.96780 0.90841 0.97168 1.17154 0.90881 0.80002 1.12458 1.91452 1.80547 1.45573 1.94844 1.21411 0.90782 1.01050 0.95082 1.20794 1.01872 0.88173 1.08047 1.17748 0.88014 0.89111 0.90439 1.42398 1.10380 1.04385 1.81732 1.18168 0.92569 0.89419 1.20694 1.21293 0.75761 0.84396 0.81425 1.90829 1.51754 1.64565 1.32525 1.86876 1.67203 1.36527 1.34473 1.22631 0.94516 0.83444 0.97654 0.86135 1.22345 0.98981 0.96209 1.04729 1.20636 0.81321 0.81347 0.88058 1.90674 1.70033 1.44043 1.41059 1.48044 1.38005 1.29338 1.17703 1.22319 1.03868 0.94612 0.87390 1.18871 0.90205 0.95357 0.81805 1.21725 1.05076 1.28368 1.02995 0.92238 1.25891 0.95770 0.98049 0.99527 1.70064 1.17617 1.45524 1.23638 0.85326 0.78833 0.78301 0.78099 1.18711 1.19473 1.20956 0.88966 0.89434 0.93074 0.80864 0.80235 0.77360 0.74484 0.88161 0.87803 0.91295 0.91000 0.90071 0.88320 0.95191 0.98358 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.43 71.24 0.67 -2.61 16 2 C -0.04 -1.11 5.92 -19.56 -0.12 -1.22 16 3 C 0.02 0.35 7.23 22.33 0.16 0.51 16 4 F -0.15 -3.35 16.45 44.97 0.74 -2.61 16 5 C -0.06 -0.95 10.00 22.34 0.22 -0.72 16 6 C -0.17 -2.16 9.88 22.37 0.22 -1.94 16 7 C 0.26 4.80 6.77 38.70 0.26 5.06 16 8 N -0.85 -11.56 8.99 -50.89 -0.46 -12.02 16 9 C -0.20 -5.22 5.77 -20.00 -0.12 -5.34 16 10 C 0.53 15.59 4.58 70.20 0.32 15.91 16 11 O -0.51 -15.61 16.37 19.74 0.32 -15.29 16 12 O -0.34 -11.45 9.44 -50.49 -0.48 -11.92 16 13 C 0.08 2.44 2.17 29.85 0.06 2.50 16 14 H 0.12 3.45 6.73 -2.39 -0.02 3.44 16 15 C -0.17 -4.03 9.14 71.98 0.66 -3.37 16 16 C 0.50 21.82 7.03 87.66 0.62 22.44 16 17 O -0.58 -31.67 16.08 15.61 0.25 -31.42 16 18 N -0.60 -25.54 2.86 -851.11 -2.43 -27.98 16 19 C 0.06 1.74 9.80 127.77 1.25 2.99 16 20 C 0.26 13.95 5.18 85.63 0.44 14.40 16 21 C -0.54 -30.84 9.39 25.60 0.24 -30.60 16 22 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 23 C 0.01 0.38 5.46 84.66 0.46 0.84 16 24 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 25 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 26 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 29 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.09 2.11 7.63 -2.38 -0.02 2.09 16 31 H 0.05 1.55 7.09 -2.39 -0.02 1.53 16 32 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.40 6.13 7.68 -92.71 -0.71 5.42 16 35 H 0.42 2.71 8.84 -92.71 -0.82 1.89 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.10 2.31 5.46 -2.39 -0.01 2.30 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 2.40 8.04 -2.39 -0.02 2.38 16 41 H 0.10 2.21 4.31 -2.39 -0.01 2.20 16 42 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 43 H 0.00 -0.11 7.36 -2.39 -0.02 -0.13 16 44 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -80.93 378.08 5.17 -75.76 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.46 Total: 16.05 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 5.37 Total: 18.86 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -2.60 Total: -95.72 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: 0.10 Total: -58.63 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.74 Total: -2.61 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -80.93 5.17 -75.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830409127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.254 kcal (2) G-P(sol) polarization free energy of solvation -80.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds