Wall clock time and date at job start Sat Apr 11 2020 05:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86802 * 119.99861 * 2 1 4 4 H 1.48500 * 109.47686 * 270.00690 * 3 2 1 5 5 H 1.48502 * 109.47023 * 30.00439 * 3 2 1 6 6 H 1.48502 * 109.47291 * 150.00339 * 3 2 1 7 7 C 1.38634 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99753 * 179.97438 * 7 2 1 9 9 O 1.34804 * 119.99773 * 359.97438 * 7 2 1 10 10 C 1.35781 * 116.99890 * 174.94720 * 9 7 2 11 11 C 1.38738 * 120.08500 * 6.10329 * 10 9 7 12 12 C 1.38346 * 119.97863 * 180.02562 * 11 10 9 13 13 F 1.35098 * 119.92756 * 180.02562 * 12 11 10 14 14 C 1.38546 * 120.14819 * 0.02562 * 12 11 10 15 15 C 1.38200 * 120.17358 * 359.68178 * 14 12 11 16 16 C 1.38692 * 120.01913 * 0.59513 * 15 14 12 17 17 N 1.40140 * 120.07493 * 179.69895 * 16 15 14 18 18 C 1.34777 * 119.99660 * 31.30127 * 17 16 15 19 19 O 1.21593 * 120.00493 * 355.07062 * 18 17 16 20 20 N 1.34783 * 119.99756 * 175.07283 * 18 17 16 21 21 C 1.46502 * 119.99755 * 180.27533 * 20 18 17 22 22 C 1.52996 * 109.47144 * 179.72311 * 21 20 18 23 23 C 1.52999 * 109.47681 * 185.18394 * 22 21 20 24 24 C 1.53003 * 115.54651 * 302.57772 * 23 22 21 25 25 O 1.42909 * 109.46874 * 304.67181 * 24 23 22 26 26 C 1.52996 * 117.50252 * 156.90374 * 23 22 21 27 27 C 1.52998 * 117.49797 * 88.23845 * 23 22 21 28 28 H 0.97005 * 120.00309 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.01318 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.91237 * 179.97438 * 14 12 11 31 31 H 1.08004 * 119.98871 * 180.32017 * 15 14 12 32 32 H 0.96994 * 120.00384 * 211.29986 * 17 16 15 33 33 H 0.96994 * 120.00199 * 359.97438 * 20 18 17 34 34 H 1.09001 * 109.46961 * 299.72737 * 21 20 18 35 35 H 1.09003 * 109.47416 * 59.72425 * 21 20 18 36 36 H 1.09000 * 109.47180 * 305.18931 * 22 21 20 37 37 H 1.09008 * 109.46907 * 65.17967 * 22 21 20 38 38 H 1.08998 * 109.47155 * 64.67101 * 24 23 22 39 39 H 1.08998 * 109.46833 * 184.67946 * 24 23 22 40 40 H 0.96697 * 113.99299 * 180.02562 * 25 24 23 41 41 H 1.08997 * 117.49616 * 0.02562 * 26 23 22 42 42 H 1.08998 * 117.49710 * 145.02038 * 26 23 22 43 43 H 1.08997 * 117.49736 * 214.98377 * 27 23 22 44 44 H 1.09000 * 117.49927 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0467 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5473 1.4403 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3680 -0.0005 10 6 2.0703 -3.5044 -0.1076 11 6 3.4560 -3.4409 -0.0833 12 6 4.2032 -4.6001 -0.1931 13 9 5.5525 -4.5371 -0.1688 14 6 3.5708 -5.8254 -0.3280 15 6 2.1907 -5.8964 -0.3469 16 6 1.4348 -4.7383 -0.2431 17 7 0.0354 -4.8084 -0.2685 18 6 -0.5940 -5.8927 0.2261 19 8 0.0523 -6.8477 0.6119 20 7 -1.9399 -5.9185 0.2930 21 6 -2.6239 -7.0947 0.8362 22 6 -4.1361 -6.8647 0.8056 23 6 -4.8442 -8.0357 1.4899 24 6 -4.5560 -9.4173 0.8991 25 8 -4.8631 -9.4120 -0.4966 26 6 -6.2463 -7.7846 2.0484 27 6 -5.0595 -7.9449 3.0019 28 1 -0.4851 0.8401 0.0004 29 1 3.9514 -2.4868 0.0205 30 1 4.1578 -6.7279 -0.4139 31 1 1.7008 -6.8538 -0.4470 32 1 -0.4802 -4.0766 -0.6419 33 1 -2.4555 -5.1566 -0.0144 34 1 -2.3770 -7.9689 0.2338 35 1 -2.3022 -7.2594 1.8646 36 1 -4.3736 -5.9395 1.3307 37 1 -4.4717 -6.7916 -0.2290 38 1 -3.5024 -9.6594 1.0383 39 1 -5.1701 -10.1634 1.4033 40 1 -4.7044 -10.2579 -0.9374 41 1 -6.6644 -6.7853 1.9280 42 1 -6.9633 -8.6039 1.9953 43 1 -4.9963 -8.8695 3.5757 44 1 -4.6971 -7.0507 3.5091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836455907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:03 Heat of formation + Delta-G solvation = -99.275188 kcal Electronic energy + Delta-G solvation = -28548.336618 eV Core-core repulsion = 24189.087543 eV Total energy + Delta-G solvation = -4359.249075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.21167 -40.23778 -39.20413 -38.61845 -36.44366 -36.09163 -34.74752 -33.99675 -32.38889 -30.46141 -29.32137 -28.01311 -26.91892 -25.48253 -23.82961 -22.70681 -22.24165 -21.54009 -20.54635 -19.30380 -18.32384 -18.10861 -17.65107 -17.48229 -16.77280 -16.02835 -15.72436 -15.52644 -15.20311 -15.01839 -14.93938 -14.53682 -14.27818 -14.20229 -13.93359 -13.71769 -13.56100 -13.45443 -13.21077 -13.04458 -12.34529 -12.21732 -12.13014 -11.80538 -11.76016 -11.63701 -11.33724 -11.23989 -10.94292 -10.71081 -10.66646 -10.53986 -10.37926 -9.93270 -9.81922 -9.74173 -9.40832 -8.94670 -8.91430 -7.83197 -7.04528 -6.58918 -4.16590 1.89952 2.16208 2.92115 3.07222 3.08795 3.13016 3.32170 3.50642 3.86339 3.97253 4.34369 4.39697 4.46100 4.54712 4.72119 4.84107 4.89592 4.98008 5.05216 5.07430 5.15690 5.28411 5.35848 5.42496 5.45325 5.61507 5.62748 5.77473 5.80202 5.82701 5.99579 6.03897 6.07876 6.24906 6.55803 6.69152 6.73032 6.94648 6.98674 7.10988 7.18983 7.33868 7.35006 7.70841 7.85579 8.31332 8.86477 8.89828 9.49313 10.58244 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011135 B = 0.002698 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.004439 B =10374.980225 C =12459.415842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.170 6.170 10 C 0.155 3.845 11 C -0.257 4.257 12 C 0.125 3.875 13 F -0.152 7.152 14 C -0.227 4.227 15 C -0.056 4.056 16 C 0.080 3.920 17 N -0.664 5.664 18 C 0.704 3.296 19 O -0.587 6.587 20 N -0.746 5.746 21 C 0.146 3.854 22 C -0.089 4.089 23 C -0.122 4.122 24 C 0.111 3.889 25 O -0.567 6.567 26 C -0.167 4.167 27 C -0.167 4.167 28 H 0.271 0.729 29 H 0.142 0.858 30 H 0.122 0.878 31 H 0.148 0.852 32 H 0.412 0.588 33 H 0.398 0.602 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.379 0.621 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 -14.124 1.123 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.073 6.073 10 C 0.099 3.901 11 C -0.278 4.278 12 C 0.105 3.895 13 F -0.131 7.131 14 C -0.247 4.247 15 C -0.077 4.077 16 C -0.015 4.015 17 N -0.311 5.311 18 C 0.405 3.595 19 O -0.466 6.466 20 N -0.402 5.402 21 C 0.021 3.979 22 C -0.127 4.127 23 C -0.122 4.122 24 C 0.034 3.966 25 O -0.372 6.372 26 C -0.204 4.204 27 C -0.204 4.204 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.140 0.860 31 H 0.166 0.834 32 H 0.248 0.752 33 H 0.232 0.768 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.226 0.774 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.229 -14.145 1.664 17.535 hybrid contribution 0.399 1.056 -0.292 1.166 sum -9.829 -13.088 1.372 16.426 Atomic orbital electron populations 1.70009 1.05915 1.27914 1.45696 1.25267 0.95899 0.98805 0.96228 0.85688 0.79028 0.79818 0.78839 1.19760 1.20207 1.19080 1.21346 0.91980 0.80455 1.52991 0.88862 1.83926 1.33881 1.11235 1.78245 1.18792 0.89502 0.87260 0.94530 1.20830 0.93388 0.98426 1.15177 1.17464 0.75918 0.94377 1.01713 1.91405 1.30192 1.97385 1.94128 1.20509 0.94666 0.95798 1.13745 1.20821 0.92090 0.97741 0.97030 1.16694 0.81263 0.91676 1.11868 1.42205 1.05271 1.20839 1.62763 1.15869 0.81743 0.83312 0.78565 1.90838 1.64766 1.35749 1.55228 1.45070 1.04929 1.20914 1.69318 1.21080 0.90327 0.87465 0.99000 1.21220 0.93493 0.96202 1.01805 1.21223 1.00020 0.95539 0.95463 1.21626 0.99103 0.94133 0.81788 1.86491 1.90189 1.38900 1.21669 1.23051 0.90796 1.03234 1.03294 1.23098 1.02376 1.03790 0.91164 0.91892 0.84005 0.85995 0.83425 0.75238 0.76815 0.91652 0.91818 0.91081 0.90111 0.92718 0.93674 0.77401 0.88491 0.88720 0.88585 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.47 13.67 55.48 0.76 -22.71 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.77 29.55 -169.99 -5.02 14.74 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.37 9.49 30.88 0.29 -10.08 16 8 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 9 O -0.17 -4.46 9.27 0.03 0.00 -4.46 16 10 C 0.16 3.62 6.66 -38.94 -0.26 3.36 16 11 C -0.26 -5.70 9.14 -39.36 -0.36 -6.06 16 12 C 0.13 2.55 7.29 -39.43 -0.29 2.26 16 13 F -0.15 -2.96 17.26 2.25 0.04 -2.92 16 14 C -0.23 -4.32 10.02 -39.48 -0.40 -4.71 16 15 C -0.06 -1.11 8.73 -39.43 -0.34 -1.46 16 16 C 0.08 1.70 6.39 -83.44 -0.53 1.17 16 17 N -0.66 -12.56 5.23 -14.07 -0.07 -12.63 16 18 C 0.70 12.58 8.43 -86.91 -0.73 11.85 16 19 O -0.59 -11.95 13.54 5.28 0.07 -11.88 16 20 N -0.75 -10.25 5.56 -65.22 -0.36 -10.61 16 21 C 0.15 1.73 5.24 -4.04 -0.02 1.71 16 22 C -0.09 -0.86 5.04 -26.73 -0.13 -0.99 16 23 C -0.12 -1.04 1.92 -154.51 -0.30 -1.34 16 24 C 0.11 0.87 6.41 37.16 0.24 1.11 16 25 O -0.57 -4.86 13.33 -35.23 -0.47 -5.33 16 26 C -0.17 -1.27 9.94 -26.69 -0.27 -1.53 16 27 C -0.17 -1.26 9.95 -26.69 -0.27 -1.53 16 28 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.14 3.13 5.64 -52.49 -0.30 2.83 16 30 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 31 H 0.15 2.88 5.92 -52.48 -0.31 2.57 16 32 H 0.41 7.43 8.51 -40.82 -0.35 7.08 16 33 H 0.40 4.66 8.49 -40.82 -0.35 4.32 16 34 H 0.07 0.82 7.32 -51.93 -0.38 0.44 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 37 H 0.08 0.82 8.04 -51.92 -0.42 0.40 16 38 H 0.05 0.43 7.37 -51.93 -0.38 0.05 16 39 H 0.05 0.29 8.10 -51.93 -0.42 -0.13 16 40 H 0.38 1.63 9.12 45.56 0.42 2.04 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -31.74 377.80 -7.68 -39.42 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -4.85 Total: 15.91 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -3.46 Total: -5.22 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.32 Total: -45.96 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.40 Total: -21.66 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.74 -7.68 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836455907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.856 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds