Wall clock time and date at job start Sat Apr 11 2020 05:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86802 * 119.99861 * 2 1 4 4 H 1.48500 * 109.47686 * 270.00690 * 3 2 1 5 5 H 1.48502 * 109.47023 * 30.00439 * 3 2 1 6 6 H 1.48502 * 109.47291 * 150.00339 * 3 2 1 7 7 C 1.38634 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99753 * 179.97438 * 7 2 1 9 9 O 1.34804 * 119.99773 * 359.97438 * 7 2 1 10 10 C 1.35781 * 116.99890 * 174.94720 * 9 7 2 11 11 C 1.38738 * 120.08500 * 6.10329 * 10 9 7 12 12 C 1.38346 * 119.97863 * 180.02562 * 11 10 9 13 13 F 1.35098 * 119.92756 * 180.02562 * 12 11 10 14 14 C 1.38546 * 120.14819 * 0.02562 * 12 11 10 15 15 C 1.38200 * 120.17358 * 359.68178 * 14 12 11 16 16 C 1.38692 * 120.01913 * 0.59513 * 15 14 12 17 17 N 1.40140 * 120.07493 * 179.69895 * 16 15 14 18 18 C 1.34777 * 119.99660 * 31.30127 * 17 16 15 19 19 O 1.21593 * 120.00493 * 355.07062 * 18 17 16 20 20 N 1.34783 * 119.99756 * 175.07283 * 18 17 16 21 21 C 1.46502 * 119.99755 * 180.27533 * 20 18 17 22 22 C 1.52996 * 109.47144 * 179.72311 * 21 20 18 23 23 C 1.52999 * 109.47681 * 185.18394 * 22 21 20 24 24 C 1.53003 * 115.54651 * 302.57772 * 23 22 21 25 25 O 1.42909 * 109.46874 * 304.67181 * 24 23 22 26 26 C 1.52996 * 117.50252 * 156.90374 * 23 22 21 27 27 C 1.52998 * 117.49797 * 88.23845 * 23 22 21 28 28 H 0.97005 * 120.00309 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.01318 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.91237 * 179.97438 * 14 12 11 31 31 H 1.08004 * 119.98871 * 180.32017 * 15 14 12 32 32 H 0.96994 * 120.00384 * 211.29986 * 17 16 15 33 33 H 0.96994 * 120.00199 * 359.97438 * 20 18 17 34 34 H 1.09001 * 109.46961 * 299.72737 * 21 20 18 35 35 H 1.09003 * 109.47416 * 59.72425 * 21 20 18 36 36 H 1.09000 * 109.47180 * 305.18931 * 22 21 20 37 37 H 1.09008 * 109.46907 * 65.17967 * 22 21 20 38 38 H 1.08998 * 109.47155 * 64.67101 * 24 23 22 39 39 H 1.08998 * 109.46833 * 184.67946 * 24 23 22 40 40 H 0.96697 * 113.99299 * 180.02562 * 25 24 23 41 41 H 1.08997 * 117.49616 * 0.02562 * 26 23 22 42 42 H 1.08998 * 117.49710 * 145.02038 * 26 23 22 43 43 H 1.08997 * 117.49736 * 214.98377 * 27 23 22 44 44 H 1.09000 * 117.49927 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4971 2.0467 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5473 1.4403 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3680 -0.0005 10 6 2.0703 -3.5044 -0.1076 11 6 3.4560 -3.4409 -0.0833 12 6 4.2032 -4.6001 -0.1931 13 9 5.5525 -4.5371 -0.1688 14 6 3.5708 -5.8254 -0.3280 15 6 2.1907 -5.8964 -0.3469 16 6 1.4348 -4.7383 -0.2431 17 7 0.0354 -4.8084 -0.2685 18 6 -0.5940 -5.8927 0.2261 19 8 0.0523 -6.8477 0.6119 20 7 -1.9399 -5.9185 0.2930 21 6 -2.6239 -7.0947 0.8362 22 6 -4.1361 -6.8647 0.8056 23 6 -4.8442 -8.0357 1.4899 24 6 -4.5560 -9.4173 0.8991 25 8 -4.8631 -9.4120 -0.4966 26 6 -6.2463 -7.7846 2.0484 27 6 -5.0595 -7.9449 3.0019 28 1 -0.4851 0.8401 0.0004 29 1 3.9514 -2.4868 0.0205 30 1 4.1578 -6.7279 -0.4139 31 1 1.7008 -6.8538 -0.4470 32 1 -0.4802 -4.0766 -0.6419 33 1 -2.4555 -5.1566 -0.0144 34 1 -2.3770 -7.9689 0.2338 35 1 -2.3022 -7.2594 1.8646 36 1 -4.3736 -5.9395 1.3307 37 1 -4.4717 -6.7916 -0.2290 38 1 -3.5024 -9.6594 1.0383 39 1 -5.1701 -10.1634 1.4033 40 1 -4.7044 -10.2579 -0.9374 41 1 -6.6644 -6.7853 1.9280 42 1 -6.9633 -8.6039 1.9953 43 1 -4.9963 -8.8695 3.5757 44 1 -4.6971 -7.0507 3.5091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836455907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:02 Heat of formation + Delta-G solvation = -121.614891 kcal Electronic energy + Delta-G solvation = -28549.305341 eV Core-core repulsion = 24189.087543 eV Total energy + Delta-G solvation = -4360.217797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.81334 -41.75475 -40.47255 -39.69539 -38.11093 -36.75950 -35.92998 -35.55389 -34.29843 -31.58449 -30.97274 -29.51673 -27.59355 -27.36154 -24.92285 -23.92309 -23.33936 -22.99236 -21.96340 -20.23187 -20.09110 -19.57836 -19.03141 -18.33890 -18.17326 -17.15113 -16.96422 -16.82953 -16.65091 -16.56441 -16.25625 -15.95538 -15.61227 -15.59373 -15.30473 -15.14593 -14.97334 -14.66340 -14.52968 -14.02130 -13.76227 -13.72515 -13.42716 -13.12191 -13.04134 -12.65898 -12.50909 -12.37817 -12.35119 -12.15168 -11.93899 -11.64936 -11.34148 -11.27661 -11.03421 -10.98202 -10.81664 -10.54315 -10.15005 -9.53176 -8.71763 -8.50178 -6.16209 0.22880 0.47575 1.37660 1.44442 1.52482 1.59224 2.03848 2.14903 2.69707 2.70632 3.06277 3.13937 3.20894 3.42120 3.46888 3.71273 3.89007 3.96261 3.98639 4.15391 4.18513 4.32383 4.37032 4.38603 4.54398 4.59522 4.62851 4.77577 4.80669 4.95117 4.99782 5.02805 5.05091 5.15713 5.23307 5.24635 5.26136 5.31512 5.34414 5.48270 5.57831 5.91386 5.95336 6.09142 6.93258 6.93541 6.94497 7.44684 7.64040 8.70163 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011135 B = 0.002698 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.004439 B =10374.980225 C =12459.415842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.008 4.008 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.099 0.901 9 O -0.202 6.202 10 C 0.129 3.871 11 C -0.262 4.262 12 C 0.120 3.880 13 F -0.145 7.145 14 C -0.202 4.202 15 C -0.057 4.057 16 C 0.080 3.920 17 N -0.666 5.666 18 C 0.702 3.298 19 O -0.611 6.611 20 N -0.731 5.731 21 C 0.149 3.851 22 C -0.079 4.079 23 C -0.138 4.138 24 C 0.111 3.889 25 O -0.587 6.587 26 C -0.162 4.162 27 C -0.164 4.164 28 H 0.274 0.726 29 H 0.136 0.864 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.414 0.586 33 H 0.409 0.591 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.395 0.605 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.048 -15.248 1.245 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.116 0.884 9 O -0.108 6.108 10 C 0.075 3.925 11 C -0.283 4.283 12 C 0.100 3.900 13 F -0.123 7.123 14 C -0.222 4.222 15 C -0.078 4.078 16 C -0.016 4.016 17 N -0.313 5.313 18 C 0.403 3.597 19 O -0.492 6.492 20 N -0.387 5.387 21 C 0.026 3.974 22 C -0.117 4.117 23 C -0.139 4.139 24 C 0.034 3.966 25 O -0.395 6.395 26 C -0.199 4.199 27 C -0.201 4.201 28 H 0.084 0.916 29 H 0.154 0.846 30 H 0.175 0.825 31 H 0.174 0.826 32 H 0.250 0.750 33 H 0.245 0.755 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.245 0.755 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.090 -15.317 1.775 18.427 hybrid contribution 0.378 1.146 -0.349 1.256 sum -9.712 -14.171 1.426 17.239 Atomic orbital electron populations 1.70117 1.07494 1.28933 1.47615 1.26361 0.96836 1.02050 0.95557 0.84683 0.77858 0.75150 0.79221 1.18857 1.19538 1.18268 1.21745 0.92526 0.81159 1.53755 0.88386 1.83906 1.34655 1.11779 1.80439 1.19124 0.90177 0.87380 0.95795 1.20911 0.93272 0.99090 1.15050 1.17451 0.76232 0.94243 1.02078 1.91425 1.29494 1.97354 1.94077 1.20896 0.94511 0.96499 1.10286 1.21002 0.92487 0.97480 0.96821 1.16948 0.82509 0.91416 1.10696 1.42229 1.04672 1.21317 1.63043 1.15995 0.82818 0.82577 0.78324 1.90805 1.65655 1.36450 1.56323 1.45063 1.03594 1.21863 1.68178 1.21167 0.91623 0.86444 0.98209 1.21116 0.91663 0.97128 1.01819 1.21296 1.00873 0.95495 0.96230 1.21650 0.99223 0.94072 0.81696 1.86443 1.90306 1.40581 1.22169 1.23107 0.90540 1.03637 1.02653 1.23152 1.02032 1.04255 0.90623 0.91638 0.84596 0.82473 0.82554 0.75017 0.75546 0.92100 0.92516 0.90656 0.90599 0.93101 0.92026 0.75502 0.88471 0.87791 0.87350 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.69 13.67 21.61 0.30 -50.40 16 2 C -0.01 -0.44 5.49 84.83 0.47 0.02 16 3 Si 1.01 40.76 29.55 68.60 2.03 42.79 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.42 -22.65 9.49 67.91 0.64 -22.01 16 8 H 0.10 5.02 5.21 -2.91 -0.02 5.01 16 9 O -0.20 -11.01 9.27 -22.81 -0.21 -11.22 16 10 C 0.13 6.13 6.66 22.68 0.15 6.28 16 11 C -0.26 -11.65 9.14 22.42 0.20 -11.45 16 12 C 0.12 4.70 7.29 22.37 0.16 4.86 16 13 F -0.14 -5.34 17.26 44.97 0.78 -4.56 16 14 C -0.20 -7.17 10.02 22.33 0.22 -6.94 16 15 C -0.06 -2.19 8.73 22.37 0.20 -1.99 16 16 C 0.08 3.40 6.39 38.21 0.24 3.64 16 17 N -0.67 -25.38 5.23 -316.69 -1.66 -27.04 16 18 C 0.70 24.87 8.43 179.05 1.51 26.38 16 19 O -0.61 -24.47 13.54 -4.01 -0.05 -24.52 16 20 N -0.73 -19.78 5.56 -478.51 -2.66 -22.44 16 21 C 0.15 3.46 5.24 86.38 0.45 3.91 16 22 C -0.08 -1.46 5.04 30.59 0.15 -1.30 16 23 C -0.14 -2.19 1.92 -52.18 -0.10 -2.29 16 24 C 0.11 1.59 6.41 71.98 0.46 2.05 16 25 O -0.59 -9.31 13.33 -148.98 -1.99 -11.29 16 26 C -0.16 -2.21 9.94 30.62 0.30 -1.90 16 27 C -0.16 -2.22 9.95 30.62 0.30 -1.91 16 28 H 0.27 14.17 8.31 -92.70 -0.77 13.39 16 29 H 0.14 6.10 5.64 -2.91 -0.02 6.09 16 30 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.16 5.80 5.92 -2.91 -0.02 5.79 16 32 H 0.41 15.33 8.51 -92.71 -0.79 14.54 16 33 H 0.41 9.42 8.49 -92.71 -0.79 8.63 16 34 H 0.06 1.50 7.32 -2.39 -0.02 1.48 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.31 8.11 -2.39 -0.02 1.29 16 37 H 0.08 1.48 8.04 -2.38 -0.02 1.46 16 38 H 0.05 0.75 7.37 -2.39 -0.02 0.73 16 39 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 40 H 0.40 2.90 9.12 -74.06 -0.68 2.23 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -68.40 377.80 0.74 -67.66 By element: Atomic # 1 Polarization: 44.83 SS G_CDS: -1.16 Total: 43.67 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 5.38 Total: -2.64 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.02 Total: -99.88 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -2.25 Total: -47.04 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -68.40 0.74 -67.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836455907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.954 kcal (2) G-P(sol) polarization free energy of solvation -68.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds