Wall clock time and date at job start Sat Apr 11 2020 05:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86793 * 120.00358 * 2 1 4 4 H 1.48499 * 109.47436 * 270.00260 * 3 2 1 5 5 H 1.48508 * 109.46956 * 30.00054 * 3 2 1 6 6 H 1.48498 * 109.47247 * 149.99817 * 3 2 1 7 7 C 1.38631 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00132 * 359.97438 * 7 2 1 9 9 O 1.34807 * 120.00357 * 180.02562 * 7 2 1 10 10 C 1.35782 * 117.00430 * 174.97772 * 9 7 2 11 11 C 1.38736 * 120.08502 * 5.19517 * 10 9 7 12 12 C 1.38343 * 119.97807 * 180.02562 * 11 10 9 13 13 F 1.35104 * 119.92605 * 179.97438 * 12 11 10 14 14 C 1.38543 * 120.14751 * 0.02693 * 12 11 10 15 15 C 1.38199 * 120.17678 * 359.67189 * 14 12 11 16 16 C 1.38695 * 120.01734 * 0.60378 * 15 14 12 17 17 N 1.40139 * 120.07246 * 179.69830 * 16 15 14 18 18 C 1.34776 * 119.99772 * 335.23056 * 17 16 15 19 19 O 1.21585 * 120.00229 * 354.33090 * 18 17 16 20 20 N 1.34787 * 119.99476 * 174.33302 * 18 17 16 21 21 C 1.46494 * 119.99602 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.47190 * 179.97438 * 21 20 18 23 23 H 1.09001 * 109.46930 * 59.99910 * 22 21 20 24 24 O 1.42898 * 109.46985 * 300.00068 * 22 21 20 25 25 C 1.52999 * 109.47433 * 179.97438 * 22 21 20 26 26 C 1.53778 * 113.61564 * 180.02562 * 25 22 21 27 27 C 1.53782 * 87.08070 * 139.98378 * 26 25 22 28 28 C 1.53783 * 87.17141 * 334.52446 * 27 26 25 29 29 H 0.96995 * 119.99880 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.01491 * 359.97438 * 11 10 9 31 31 H 1.08012 * 119.91070 * 179.97438 * 14 12 11 32 32 H 1.08005 * 119.99029 * 180.32629 * 15 14 12 33 33 H 0.97004 * 119.99901 * 155.23205 * 17 16 15 34 34 H 0.96991 * 120.00048 * 359.97438 * 20 18 17 35 35 H 1.09001 * 109.47257 * 59.99860 * 21 20 18 36 36 H 1.09003 * 109.47513 * 299.99844 * 21 20 18 37 37 H 0.96697 * 113.99877 * 300.00020 * 24 22 21 38 38 H 1.09004 * 112.90663 * 48.74959 * 25 22 21 39 39 H 1.08996 * 113.61517 * 25.43460 * 26 25 22 40 40 H 1.09001 * 113.61022 * 254.53115 * 26 25 22 41 41 H 1.08998 * 113.61218 * 89.11855 * 27 26 25 42 42 H 1.09000 * 113.60983 * 219.93301 * 27 26 25 43 43 H 1.08999 * 113.61088 * 140.02391 * 28 27 26 44 44 H 1.08998 * 113.61264 * 270.92373 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4400 0.7001 7 6 2.0088 -1.2006 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3569 -1.2007 0.0000 10 6 3.9733 -2.4060 0.1053 11 6 3.2238 -3.5734 0.0977 12 6 3.8540 -4.8002 0.2057 13 9 3.1231 -5.9364 0.1987 14 6 5.2330 -4.8662 0.3221 15 6 5.9862 -3.7075 0.3241 16 6 5.3613 -2.4736 0.2220 17 7 6.1235 -1.2976 0.2303 18 6 7.3377 -1.2857 0.8151 19 8 7.7286 -2.2625 1.4245 20 7 8.1185 -0.1908 0.7244 21 6 9.4385 -0.1780 1.3597 22 6 10.1130 1.1719 1.1071 23 1 9.4996 1.9688 1.5277 24 8 10.2594 1.3755 -0.2997 25 6 11.4914 1.1856 1.7711 26 6 12.2560 2.5055 1.5761 27 6 12.7152 2.3640 3.0369 28 6 11.4494 1.5233 3.2735 29 1 -0.4850 0.8400 -0.0004 30 1 2.1486 -3.5246 0.0084 31 1 5.7211 -5.8261 0.4066 32 1 7.0614 -3.7627 0.4097 33 1 5.7771 -0.4922 -0.1849 34 1 7.8068 0.5883 0.2380 35 1 10.0520 -0.9746 0.9388 36 1 9.3270 -0.3337 2.4327 37 1 10.7949 0.7020 -0.7409 38 1 12.0827 0.2997 1.5394 39 1 11.6075 3.3644 1.4034 40 1 13.0696 2.4361 0.8540 41 1 13.6413 1.8005 3.1508 42 1 12.7226 3.3060 3.5853 43 1 11.6123 0.6617 3.9209 44 1 10.5809 2.1143 3.5641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836457667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:14 Heat of formation + Delta-G solvation = -102.508479 kcal Electronic energy + Delta-G solvation = -28779.859562 eV Core-core repulsion = 24420.470281 eV Total energy + Delta-G solvation = -4359.389281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.25413 -40.52090 -39.79028 -38.87494 -36.94460 -36.42404 -34.32269 -34.20641 -32.49714 -30.17527 -29.52882 -28.23719 -26.04044 -25.50742 -25.24635 -22.70355 -22.12142 -21.62022 -20.68935 -19.93969 -18.45217 -18.28253 -17.88034 -17.27929 -16.77794 -16.23252 -15.83865 -15.44703 -15.26086 -15.15936 -14.92779 -14.91135 -14.54776 -14.13180 -14.06647 -13.82691 -13.48447 -13.40520 -13.25936 -12.85932 -12.81325 -12.44630 -12.31914 -12.25843 -11.85545 -11.77232 -11.48587 -11.31298 -10.98664 -10.90245 -10.81030 -10.66273 -10.46631 -10.15226 -9.96718 -9.77601 -9.55195 -9.13138 -8.99820 -7.94877 -7.16601 -6.53436 -4.20627 1.77823 2.03166 2.70053 3.11140 3.13950 3.23434 3.30144 3.81690 4.09350 4.12326 4.18611 4.28829 4.35899 4.39007 4.46678 4.55334 4.66326 4.82342 4.93474 4.95902 5.01384 5.27856 5.33798 5.36908 5.44176 5.52133 5.53908 5.58234 5.64922 5.70459 5.84276 5.91528 6.06313 6.07197 6.34461 6.47703 6.62593 6.82899 6.89445 6.99465 7.13360 7.25185 7.47296 7.66242 7.88447 8.09998 8.68064 8.79685 9.34654 10.53879 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010700 B = 0.002978 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.081144 B = 9398.516397 C =11574.511045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.390 4.390 8 H 0.109 0.891 9 O -0.212 6.212 10 C 0.160 3.840 11 C -0.242 4.242 12 C 0.123 3.877 13 F -0.149 7.149 14 C -0.217 4.217 15 C -0.064 4.064 16 C 0.085 3.915 17 N -0.666 5.666 18 C 0.703 3.297 19 O -0.582 6.582 20 N -0.742 5.742 21 C 0.110 3.890 22 C 0.105 3.895 23 H 0.105 0.895 24 O -0.555 6.555 25 C -0.143 4.143 26 C -0.124 4.124 27 C -0.145 4.145 28 C -0.135 4.135 29 H 0.281 0.719 30 H 0.149 0.851 31 H 0.124 0.876 32 H 0.150 0.850 33 H 0.409 0.591 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.377 0.623 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.683 4.143 1.918 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.465 4.465 8 H 0.126 0.874 9 O -0.117 6.117 10 C 0.106 3.894 11 C -0.263 4.263 12 C 0.103 3.897 13 F -0.128 7.128 14 C -0.237 4.237 15 C -0.084 4.084 16 C -0.010 4.010 17 N -0.312 5.312 18 C 0.404 3.596 19 O -0.460 6.460 20 N -0.398 5.398 21 C -0.015 4.015 22 C 0.045 3.955 23 H 0.123 0.877 24 O -0.360 6.360 25 C -0.162 4.162 26 C -0.162 4.162 27 C -0.183 4.183 28 C -0.172 4.172 29 H 0.092 0.908 30 H 0.167 0.833 31 H 0.142 0.858 32 H 0.168 0.832 33 H 0.245 0.755 34 H 0.236 0.764 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.224 0.776 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 22.547 4.155 2.582 23.072 hybrid contribution -0.145 0.690 -0.423 0.822 sum 22.403 4.844 2.159 23.022 Atomic orbital electron populations 1.69643 1.05566 1.28678 1.47114 1.24464 0.95041 0.98794 0.95575 0.86193 0.80281 0.81520 0.78915 1.19703 1.20655 1.18502 1.20754 0.76375 0.96854 1.52543 0.87372 1.83488 1.23110 1.24703 1.80355 1.18389 0.89189 0.85924 0.95938 1.20950 1.02059 0.90027 1.13288 1.17461 0.89088 0.81323 1.01809 1.91424 1.77881 1.49436 1.94085 1.20560 0.91536 0.99027 1.12563 1.20800 1.00824 0.88890 0.97920 1.16706 0.86650 0.85807 1.11834 1.42246 1.16587 1.13371 1.59029 1.15856 0.80638 0.83464 0.79645 1.90858 1.74133 1.34130 1.46918 1.44948 1.18054 1.17112 1.59732 1.21874 0.83046 0.97716 0.98886 1.22241 0.94827 0.96503 0.81881 0.87703 1.86598 1.75375 1.54293 1.19777 1.23269 0.96475 0.99428 0.97004 1.22785 0.99637 0.97113 0.96657 1.22843 0.97899 1.00445 0.97079 1.22951 0.98680 1.00362 0.95252 0.90841 0.83338 0.85772 0.83245 0.75550 0.76433 0.91355 0.90639 0.77610 0.88652 0.89796 0.91458 0.90220 0.91389 0.91040 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.36 13.96 55.48 0.77 -23.58 16 2 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 20.19 28.62 -169.99 -4.86 15.33 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.39 -10.44 9.94 30.88 0.31 -10.13 16 8 H 0.11 3.01 5.44 -52.48 -0.29 2.72 16 9 O -0.21 -5.13 8.00 0.02 0.00 -5.13 16 10 C 0.16 3.55 6.66 -38.95 -0.26 3.29 16 11 C -0.24 -5.28 9.14 -39.36 -0.36 -5.64 16 12 C 0.12 2.45 7.29 -39.43 -0.29 2.16 16 13 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 14 C -0.22 -3.93 10.02 -39.48 -0.40 -4.33 16 15 C -0.06 -1.19 8.71 -39.43 -0.34 -1.53 16 16 C 0.09 1.68 6.45 -83.44 -0.54 1.14 16 17 N -0.67 -11.47 5.30 -14.07 -0.07 -11.54 16 18 C 0.70 11.29 8.37 -86.91 -0.73 10.56 16 19 O -0.58 -10.88 13.51 5.29 0.07 -10.81 16 20 N -0.74 -8.74 5.45 -65.22 -0.36 -9.09 16 21 C 0.11 1.03 5.33 -4.04 -0.02 1.01 16 22 C 0.10 0.75 2.82 -26.73 -0.08 0.68 16 23 H 0.11 0.80 7.95 -51.93 -0.41 0.39 16 24 O -0.56 -4.28 12.88 -35.23 -0.45 -4.74 16 25 C -0.14 -0.85 3.33 -89.67 -0.30 -1.15 16 26 C -0.12 -0.74 7.44 -25.92 -0.19 -0.94 16 27 C -0.15 -0.81 8.07 -25.92 -0.21 -1.02 16 28 C -0.13 -0.82 7.65 -25.78 -0.20 -1.01 16 29 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.15 3.39 5.63 -52.49 -0.30 3.09 16 31 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 32 H 0.15 2.71 5.79 -52.48 -0.30 2.41 16 33 H 0.41 6.54 8.36 -40.82 -0.34 6.20 16 34 H 0.40 4.15 8.37 -40.82 -0.34 3.81 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.38 1.89 9.05 45.56 0.41 2.30 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.52 7.97 -51.93 -0.41 0.11 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -30.58 373.04 -7.86 -38.43 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -4.92 Total: 13.62 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -3.70 Total: -5.26 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.34 Total: -44.22 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.38 Total: -20.68 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.86 Total: 15.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.58 -7.86 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836457667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.075 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds