Wall clock time and date at job start Sat Apr 11 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37719 * 120.02015 * 2 1 4 4 C 1.38605 * 120.38063 * 179.97438 * 3 2 1 5 5 C 1.38136 * 120.40840 * 0.02562 * 4 3 2 6 6 F 1.35105 * 119.98328 * 180.02562 * 5 4 3 7 7 C 1.39124 * 120.03048 * 359.73591 * 5 4 3 8 8 N 1.38979 * 120.18681 * 180.28390 * 7 5 4 9 9 C 1.39809 * 120.01926 * 179.97438 * 2 1 3 10 10 C 1.47296 * 120.20614 * 0.02562 * 9 2 1 11 11 O 1.21524 * 120.00373 * 89.99757 * 10 9 2 12 12 O 1.34768 * 119.99986 * 269.99731 * 10 9 2 13 13 C 1.45206 * 116.99982 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47273 * 30.00365 * 13 12 10 15 15 C 1.52998 * 109.47105 * 270.00282 * 13 12 10 16 16 C 1.50701 * 109.46854 * 150.00150 * 13 12 10 17 17 O 1.21277 * 120.00211 * 16.00909 * 16 13 12 18 18 N 1.34781 * 119.99525 * 196.00756 * 16 13 12 19 19 C 1.46494 * 120.00204 * 5.36936 * 18 16 13 20 20 C 1.46499 * 119.99781 * 185.36530 * 18 16 13 21 21 C 1.50693 * 109.47326 * 89.99943 * 20 18 16 22 22 H 1.08008 * 119.99977 * 359.97438 * 21 20 18 23 23 C 1.37878 * 120.00371 * 180.02562 * 21 20 18 24 24 N 1.31512 * 120.00153 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99816 * 359.97438 * 23 21 20 26 26 H 1.48509 * 109.47043 * 90.00439 * 25 23 21 27 27 H 1.48499 * 109.47263 * 210.00240 * 25 23 21 28 28 H 1.48503 * 109.47127 * 330.00411 * 25 23 21 29 29 H 1.08996 * 109.47572 * 270.02714 * 1 2 3 30 30 H 1.08999 * 109.46789 * 30.03045 * 1 2 3 31 31 H 1.08997 * 109.46780 * 150.02164 * 1 2 3 32 32 H 1.08002 * 119.81165 * 359.95043 * 3 2 1 33 33 H 1.07998 * 119.80009 * 180.02562 * 4 3 2 34 34 H 0.97004 * 120.00168 * 180.23297 * 8 7 5 35 35 H 0.96996 * 120.00291 * 0.23029 * 8 7 5 36 36 H 1.08994 * 109.47611 * 66.14489 * 15 13 12 37 37 H 1.09002 * 109.46937 * 306.14252 * 15 13 12 38 38 H 1.08999 * 109.46913 * 186.14650 * 15 13 12 39 39 H 1.08998 * 109.47479 * 84.81893 * 19 18 16 40 40 H 1.09002 * 109.47016 * 204.81979 * 19 18 16 41 41 H 1.09000 * 109.46810 * 324.81456 * 19 18 16 42 42 H 1.08995 * 109.47490 * 210.00676 * 20 18 16 43 43 H 1.09008 * 109.47194 * 330.00432 * 20 18 16 44 44 H 0.97000 * 120.00314 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1924 0.0000 4 6 3.5821 1.2012 0.0005 5 6 4.2888 0.0142 0.0005 6 9 5.6397 0.0328 0.0016 7 6 3.6100 -1.2002 0.0056 8 7 4.3178 -2.3963 0.0115 9 6 2.2065 -1.2105 0.0005 10 6 1.4751 -2.4891 0.0005 11 8 1.1736 -3.0167 -1.0518 12 8 1.1400 -3.0737 1.1677 13 6 0.4195 -4.3321 1.0917 14 1 0.7084 -4.8620 0.1840 15 6 -1.0854 -4.0572 1.0647 16 6 0.7545 -5.1761 2.2943 17 8 1.2785 -4.6696 3.2637 18 7 0.4717 -6.4939 2.2926 19 6 -0.0522 -7.1291 1.0809 20 6 0.6883 -7.2911 3.5024 21 6 -0.5632 -7.2806 4.3417 22 1 -1.4330 -6.7342 4.0076 23 6 -0.5978 -7.9674 5.5368 24 7 -1.6902 -7.9586 6.2690 25 14 0.9066 -8.9118 6.1150 26 1 1.7643 -8.0210 6.9375 27 1 0.4770 -10.0761 6.9304 28 1 1.6746 -9.3888 4.9370 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6533 2.1262 -0.0008 33 1 4.1129 2.1417 0.0009 34 1 3.8418 -3.2415 0.0116 35 1 5.2877 -2.3859 0.0156 36 1 -1.3440 -3.5410 0.1402 37 1 -1.3562 -3.4339 1.9169 38 1 -1.6281 -5.0010 1.1178 39 1 0.7762 -7.4096 0.4304 40 1 -0.6181 -8.0200 1.3533 41 1 -0.7046 -6.4302 0.5574 42 1 0.9300 -8.3167 3.2234 43 1 1.5131 -6.8663 4.0747 44 1 -1.7146 -8.4421 7.1095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920571933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:00 Heat of formation + Delta-G solvation = -132.676272 kcal Electronic energy + Delta-G solvation = -29644.280136 eV Core-core repulsion = 25283.582682 eV Total energy + Delta-G solvation = -4360.697455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.07680 -41.07219 -39.60033 -38.71571 -36.44282 -35.45189 -35.06416 -32.88439 -32.56978 -31.69177 -29.70302 -28.44717 -27.07275 -26.25457 -25.17122 -24.01535 -22.30745 -21.81566 -20.90494 -18.94396 -18.57626 -18.16395 -17.32565 -17.05128 -17.00417 -16.50289 -15.94087 -15.84503 -15.75024 -15.42227 -15.07040 -14.78741 -14.55911 -14.19134 -14.00938 -13.81486 -13.49415 -13.22582 -12.96548 -12.63936 -12.45673 -12.40754 -12.34264 -12.30286 -12.10233 -11.98328 -11.95112 -11.54888 -11.51800 -11.01441 -10.98602 -10.81839 -10.72773 -10.56131 -10.21305 -9.61094 -9.13901 -9.02775 -8.64682 -7.96690 -7.85098 -6.14663 -4.14479 0.62814 1.03645 1.84332 2.34426 3.07752 3.19800 3.25516 3.29229 3.31390 3.33605 3.66983 4.01726 4.30899 4.34511 4.44857 4.58411 4.70174 4.83676 4.90276 4.98216 4.99714 5.18728 5.28440 5.36473 5.42409 5.45984 5.48888 5.61626 5.65335 5.72098 5.76980 5.88989 5.99553 6.07488 6.17436 6.24022 6.37463 6.58928 6.84876 6.89386 7.17534 7.20232 7.50587 7.53366 8.04079 8.38688 8.74561 8.88024 9.44865 10.98452 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016804 B = 0.002801 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.870162 B = 9992.711710 C =10561.481543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.002 3.998 3 C -0.157 4.157 4 C -0.076 4.076 5 C 0.007 3.993 6 F -0.140 7.140 7 C 0.241 3.759 8 N -0.857 5.857 9 C -0.170 4.170 10 C 0.520 3.480 11 O -0.496 6.496 12 O -0.316 6.316 13 C 0.068 3.932 14 H 0.103 0.897 15 C -0.166 4.166 16 C 0.512 3.488 17 O -0.517 6.517 18 N -0.592 5.592 19 C 0.073 3.927 20 C 0.216 3.784 21 C -0.534 4.534 22 H 0.076 0.924 23 C 0.074 3.926 24 N -0.895 5.895 25 Si 0.876 3.124 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.266 1.266 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.405 0.595 35 H 0.409 0.591 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.039 0.961 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 15.301 -17.192 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.001 3.999 3 C -0.177 4.177 4 C -0.096 4.096 5 C -0.017 4.017 6 F -0.118 7.118 7 C 0.132 3.868 8 N -0.394 5.394 9 C -0.177 4.177 10 C 0.363 3.637 11 O -0.384 6.384 12 O -0.231 6.231 13 C 0.009 3.991 14 H 0.121 0.879 15 C -0.223 4.223 16 C 0.296 3.704 17 O -0.392 6.392 18 N -0.325 5.325 19 C -0.071 4.071 20 C 0.096 3.904 21 C -0.572 4.572 22 H 0.094 0.906 23 C -0.129 4.129 24 N -0.533 5.533 25 Si 0.703 3.297 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.191 1.191 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.234 0.766 35 H 0.239 0.761 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.706 15.279 -16.777 23.964 hybrid contribution 1.019 -1.080 0.351 1.526 sum 8.725 14.199 -16.426 23.400 Atomic orbital electron populations 1.20978 0.90053 1.03652 1.03722 1.19679 0.96347 0.90615 0.93264 1.20540 0.92841 0.97532 1.06749 1.21076 0.94712 0.96642 0.97134 1.16826 0.77066 0.92527 1.15243 1.91461 1.28232 1.97135 1.95014 1.17433 0.89680 0.86450 0.93260 1.42287 1.09857 1.04988 1.82286 1.18130 0.90334 0.91344 1.17859 1.20994 0.76144 0.84346 0.82247 1.90866 1.51448 1.63437 1.32626 1.86863 1.67476 1.35810 1.32923 1.22721 0.93533 0.83116 0.99686 0.87891 1.22177 0.92010 1.04465 1.03666 1.19759 0.80148 0.82606 0.87860 1.90708 1.41906 1.71516 1.35119 1.47746 1.63427 1.07315 1.14008 1.21872 0.98604 0.99679 0.86959 1.19743 0.98435 0.89948 0.82275 1.21309 0.98603 1.32593 1.04685 0.90620 1.24845 0.95988 0.96019 0.96035 1.69887 1.27271 1.42542 1.13627 0.86855 0.83470 0.79924 0.79475 1.19819 1.20983 1.19050 0.89509 0.90155 0.91292 0.84300 0.84110 0.76609 0.76120 0.91130 0.90342 0.89230 0.93298 0.89804 0.91882 0.94833 0.94304 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 9.62 36.01 0.35 -0.78 16 2 C 0.00 0.02 5.91 -104.22 -0.62 -0.60 16 3 C -0.16 -1.31 9.67 -39.64 -0.38 -1.69 16 4 C -0.08 -0.66 10.00 -39.48 -0.39 -1.05 16 5 C 0.01 0.08 7.30 -39.29 -0.29 -0.21 16 6 F -0.14 -1.51 16.63 2.25 0.04 -1.47 16 7 C 0.24 2.90 6.77 -83.49 -0.57 2.33 16 8 N -0.86 -9.20 8.99 32.60 0.29 -8.91 16 9 C -0.17 -2.17 5.77 -104.83 -0.60 -2.78 16 10 C 0.52 7.51 4.58 34.41 0.16 7.66 16 11 O -0.50 -7.61 16.36 -19.28 -0.32 -7.92 16 12 O -0.32 -5.18 9.48 -47.20 -0.45 -5.63 16 13 C 0.07 1.09 2.14 -27.88 -0.06 1.03 16 14 H 0.10 1.46 6.32 -51.93 -0.33 1.13 16 15 C -0.17 -2.30 9.19 37.16 0.34 -1.96 16 16 C 0.51 10.50 6.95 -10.98 -0.08 10.43 16 17 O -0.52 -12.89 16.13 -13.54 -0.22 -13.10 16 18 N -0.59 -11.90 2.86 -182.96 -0.52 -12.42 16 19 C 0.07 1.07 9.79 59.84 0.59 1.65 16 20 C 0.22 5.17 4.25 -5.20 -0.02 5.15 16 21 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 22 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 23 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 24 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 25 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 26 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.07 0.69 7.08 -51.93 -0.37 0.32 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.40 4.50 7.68 -40.82 -0.31 4.19 16 35 H 0.41 3.56 8.31 -40.82 -0.34 3.22 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.20 6.32 -51.93 -0.33 0.87 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 41 H 0.06 0.78 4.92 -51.93 -0.26 0.53 16 42 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 43 H 0.04 1.00 6.78 -51.92 -0.35 0.65 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -35.31 375.70 -7.04 -42.35 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.62 Total: 5.37 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.02 Total: 5.89 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.54 Total: -47.71 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.98 Total: -26.66 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.31 -7.04 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920571933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.323 kcal (2) G-P(sol) polarization free energy of solvation -35.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds