Wall clock time and date at job start Sat Apr 11 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37719 * 120.02015 * 2 1 4 4 C 1.38605 * 120.38063 * 179.97438 * 3 2 1 5 5 C 1.38136 * 120.40840 * 0.02562 * 4 3 2 6 6 F 1.35105 * 119.98328 * 180.02562 * 5 4 3 7 7 C 1.39124 * 120.03048 * 359.73591 * 5 4 3 8 8 N 1.38979 * 120.18681 * 180.28390 * 7 5 4 9 9 C 1.39809 * 120.01926 * 179.97438 * 2 1 3 10 10 C 1.47296 * 120.20614 * 0.02562 * 9 2 1 11 11 O 1.21524 * 120.00373 * 89.99757 * 10 9 2 12 12 O 1.34768 * 119.99986 * 269.99731 * 10 9 2 13 13 C 1.45206 * 116.99982 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47273 * 30.00365 * 13 12 10 15 15 C 1.52998 * 109.47105 * 270.00282 * 13 12 10 16 16 C 1.50701 * 109.46854 * 150.00150 * 13 12 10 17 17 O 1.21277 * 120.00211 * 16.00909 * 16 13 12 18 18 N 1.34781 * 119.99525 * 196.00756 * 16 13 12 19 19 C 1.46494 * 120.00204 * 5.36936 * 18 16 13 20 20 C 1.46499 * 119.99781 * 185.36530 * 18 16 13 21 21 C 1.50693 * 109.47326 * 89.99943 * 20 18 16 22 22 H 1.08008 * 119.99977 * 359.97438 * 21 20 18 23 23 C 1.37878 * 120.00371 * 180.02562 * 21 20 18 24 24 N 1.31512 * 120.00153 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99816 * 359.97438 * 23 21 20 26 26 H 1.48509 * 109.47043 * 90.00439 * 25 23 21 27 27 H 1.48499 * 109.47263 * 210.00240 * 25 23 21 28 28 H 1.48503 * 109.47127 * 330.00411 * 25 23 21 29 29 H 1.08996 * 109.47572 * 270.02714 * 1 2 3 30 30 H 1.08999 * 109.46789 * 30.03045 * 1 2 3 31 31 H 1.08997 * 109.46780 * 150.02164 * 1 2 3 32 32 H 1.08002 * 119.81165 * 359.95043 * 3 2 1 33 33 H 1.07998 * 119.80009 * 180.02562 * 4 3 2 34 34 H 0.97004 * 120.00168 * 180.23297 * 8 7 5 35 35 H 0.96996 * 120.00291 * 0.23029 * 8 7 5 36 36 H 1.08994 * 109.47611 * 66.14489 * 15 13 12 37 37 H 1.09002 * 109.46937 * 306.14252 * 15 13 12 38 38 H 1.08999 * 109.46913 * 186.14650 * 15 13 12 39 39 H 1.08998 * 109.47479 * 84.81893 * 19 18 16 40 40 H 1.09002 * 109.47016 * 204.81979 * 19 18 16 41 41 H 1.09000 * 109.46810 * 324.81456 * 19 18 16 42 42 H 1.08995 * 109.47490 * 210.00676 * 20 18 16 43 43 H 1.09008 * 109.47194 * 330.00432 * 20 18 16 44 44 H 0.97000 * 120.00314 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1924 0.0000 4 6 3.5821 1.2012 0.0005 5 6 4.2888 0.0142 0.0005 6 9 5.6397 0.0328 0.0016 7 6 3.6100 -1.2002 0.0056 8 7 4.3178 -2.3963 0.0115 9 6 2.2065 -1.2105 0.0005 10 6 1.4751 -2.4891 0.0005 11 8 1.1736 -3.0167 -1.0518 12 8 1.1400 -3.0737 1.1677 13 6 0.4195 -4.3321 1.0917 14 1 0.7084 -4.8620 0.1840 15 6 -1.0854 -4.0572 1.0647 16 6 0.7545 -5.1761 2.2943 17 8 1.2785 -4.6696 3.2637 18 7 0.4717 -6.4939 2.2926 19 6 -0.0522 -7.1291 1.0809 20 6 0.6883 -7.2911 3.5024 21 6 -0.5632 -7.2806 4.3417 22 1 -1.4330 -6.7342 4.0076 23 6 -0.5978 -7.9674 5.5368 24 7 -1.6902 -7.9586 6.2690 25 14 0.9066 -8.9118 6.1150 26 1 1.7643 -8.0210 6.9375 27 1 0.4770 -10.0761 6.9304 28 1 1.6746 -9.3888 4.9370 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6533 2.1262 -0.0008 33 1 4.1129 2.1417 0.0009 34 1 3.8418 -3.2415 0.0116 35 1 5.2877 -2.3859 0.0156 36 1 -1.3440 -3.5410 0.1402 37 1 -1.3562 -3.4339 1.9169 38 1 -1.6281 -5.0010 1.1178 39 1 0.7762 -7.4096 0.4304 40 1 -0.6181 -8.0200 1.3533 41 1 -0.7046 -6.4302 0.5574 42 1 0.9300 -8.3167 3.2234 43 1 1.5131 -6.8663 4.0747 44 1 -1.7146 -8.4421 7.1095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920571933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:59 Heat of formation + Delta-G solvation = -155.779896 kcal Electronic energy + Delta-G solvation = -29645.281985 eV Core-core repulsion = 25283.582682 eV Total energy + Delta-G solvation = -4361.699303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -49.87537 -42.19857 -40.89491 -39.84546 -37.66832 -36.76239 -36.23110 -34.83474 -33.54416 -32.96976 -30.59600 -30.22926 -27.81121 -27.65125 -26.31167 -25.37117 -23.85189 -22.63309 -22.01029 -20.44546 -19.64497 -19.16009 -19.00194 -18.43748 -18.09945 -17.67937 -17.22338 -17.00777 -16.68234 -16.56731 -16.36372 -16.11617 -15.86241 -15.29778 -14.97507 -14.83513 -14.61985 -14.48567 -14.37886 -14.15665 -13.77148 -13.66628 -13.46823 -13.43677 -13.24750 -13.06825 -12.92697 -12.80440 -12.75456 -12.65957 -12.47671 -12.06155 -12.02822 -11.79171 -11.75503 -11.68825 -10.84826 -10.73803 -9.86682 -9.53537 -8.75752 -8.35431 -6.41063 -0.16708 0.27044 0.74706 1.19283 1.32900 1.36561 1.44318 1.49326 2.25720 2.29841 2.44466 2.50598 2.98838 3.14545 3.31327 3.46517 3.62068 3.72639 3.75511 3.83364 4.13704 4.24168 4.26158 4.45113 4.52798 4.56572 4.58661 4.71612 4.73307 4.75488 4.82839 4.83007 4.88766 5.02011 5.07459 5.15190 5.20776 5.39650 5.41342 5.48843 5.67408 6.07035 6.19253 6.34849 6.43814 6.50161 6.60668 7.10560 7.25759 8.81079 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016804 B = 0.002801 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.870162 B = 9992.711710 C =10561.481543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.007 4.007 3 C -0.147 4.147 4 C -0.066 4.066 5 C -0.009 4.009 6 F -0.143 7.143 7 C 0.224 3.776 8 N -0.858 5.858 9 C -0.202 4.202 10 C 0.529 3.471 11 O -0.508 6.508 12 O -0.334 6.334 13 C 0.077 3.923 14 H 0.127 0.873 15 C -0.161 4.161 16 C 0.503 3.497 17 O -0.573 6.573 18 N -0.596 5.596 19 C 0.063 3.937 20 C 0.223 3.777 21 C -0.539 4.539 22 H 0.035 0.965 23 C 0.014 3.986 24 N -0.942 5.942 25 Si 0.944 3.056 26 H -0.278 1.278 27 H -0.275 1.275 28 H -0.237 1.237 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.176 0.824 33 H 0.173 0.827 34 H 0.401 0.599 35 H 0.415 0.585 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.020 0.980 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.501 16.227 -19.077 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.007 4.007 3 C -0.167 4.167 4 C -0.085 4.085 5 C -0.033 4.033 6 F -0.122 7.122 7 C 0.115 3.885 8 N -0.396 5.396 9 C -0.208 4.208 10 C 0.372 3.628 11 O -0.396 6.396 12 O -0.250 6.250 13 C 0.019 3.981 14 H 0.144 0.856 15 C -0.218 4.218 16 C 0.290 3.710 17 O -0.453 6.453 18 N -0.328 5.328 19 C -0.078 4.078 20 C 0.101 3.899 21 C -0.577 4.577 22 H 0.053 0.947 23 C -0.184 4.184 24 N -0.582 5.582 25 Si 0.767 3.233 26 H -0.204 1.204 27 H -0.200 1.200 28 H -0.160 1.160 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.072 0.928 32 H 0.193 0.807 33 H 0.190 0.810 34 H 0.229 0.771 35 H 0.247 0.753 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.640 16.194 -18.729 26.224 hybrid contribution 0.663 -1.259 0.897 1.682 sum 9.303 14.935 -17.832 25.052 Atomic orbital electron populations 1.21037 0.89079 1.04399 1.03877 1.20030 0.97272 0.90590 0.92858 1.20962 0.92841 0.98073 1.04802 1.21505 0.95029 0.97046 0.94902 1.17073 0.77105 0.92933 1.16192 1.91449 1.28449 1.97160 1.95143 1.17653 0.89750 0.87204 0.93882 1.42296 1.10242 1.04690 1.82384 1.18301 0.90768 0.91267 1.20502 1.21271 0.75556 0.84547 0.81393 1.90836 1.52111 1.63958 1.32741 1.86876 1.67852 1.35873 1.34400 1.22625 0.94616 0.82988 0.97882 0.85578 1.22181 0.90468 1.04772 1.04401 1.20574 0.78914 0.82869 0.88611 1.90667 1.44451 1.72608 1.37544 1.47819 1.63167 1.07391 1.14439 1.22219 1.00297 0.99937 0.85350 1.19448 0.95576 0.91517 0.83376 1.21536 0.98918 1.31696 1.05591 0.94681 1.25800 0.99298 0.97224 0.96117 1.70032 1.29799 1.44026 1.14364 0.85769 0.79306 0.78399 0.79820 1.20367 1.19981 1.15992 0.89579 0.87171 0.92778 0.80675 0.81003 0.77095 0.75335 0.88427 0.91863 0.88726 0.89918 0.89956 0.89488 0.92442 0.96189 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.62 71.24 0.69 -1.33 16 2 C -0.01 -0.13 5.91 -19.61 -0.12 -0.24 16 3 C -0.15 -2.00 9.67 22.23 0.22 -1.79 16 4 C -0.07 -0.96 10.00 22.33 0.22 -0.73 16 5 C -0.01 -0.19 7.30 22.46 0.16 -0.02 16 6 F -0.14 -2.96 16.63 44.97 0.75 -2.21 16 7 C 0.22 5.33 6.77 38.74 0.26 5.59 16 8 N -0.86 -18.70 8.99 -50.77 -0.46 -19.16 16 9 C -0.20 -5.06 5.77 -20.00 -0.12 -5.18 16 10 C 0.53 15.13 4.58 70.20 0.32 15.45 16 11 O -0.51 -15.18 16.36 19.76 0.32 -14.86 16 12 O -0.33 -11.07 9.48 -50.55 -0.48 -11.55 16 13 C 0.08 2.43 2.14 29.85 0.06 2.49 16 14 H 0.13 3.36 6.32 -2.39 -0.02 3.35 16 15 C -0.16 -4.36 9.19 71.98 0.66 -3.69 16 16 C 0.50 20.93 6.95 87.66 0.61 21.54 16 17 O -0.57 -29.66 16.13 15.24 0.25 -29.42 16 18 N -0.60 -23.78 2.86 -851.15 -2.43 -26.21 16 19 C 0.06 1.74 9.79 127.77 1.25 2.99 16 20 C 0.22 10.64 4.25 85.63 0.36 11.00 16 21 C -0.54 -31.01 9.94 25.60 0.25 -30.75 16 22 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 23 C 0.01 0.82 5.47 84.66 0.46 1.28 16 24 N -0.94 -58.72 13.96 21.45 0.30 -58.42 16 25 Si 0.94 43.78 27.47 68.60 1.88 45.66 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.11 1.03 8.08 -2.39 -0.02 1.01 16 31 H 0.05 1.02 7.08 -2.39 -0.02 1.00 16 32 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 33 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.40 9.14 7.68 -92.71 -0.71 8.43 16 35 H 0.42 7.36 8.31 -92.71 -0.77 6.59 16 36 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 2.44 6.32 -2.39 -0.02 2.43 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 2.31 8.03 -2.39 -0.02 2.29 16 41 H 0.09 1.96 4.92 -2.39 -0.01 1.95 16 42 H 0.06 2.48 7.13 -2.39 -0.02 2.46 16 43 H 0.02 1.04 6.78 -2.38 -0.02 1.02 16 44 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -80.52 375.70 4.97 -75.55 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.47 Total: 24.00 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 5.31 Total: 16.61 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -2.59 Total: -103.79 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: 0.09 Total: -55.82 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.75 Total: -2.21 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Total: -80.52 4.97 -75.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920571933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.230 kcal (2) G-P(sol) polarization free energy of solvation -80.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds