Wall clock time and date at job start Sat Apr 11 2020 05:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35702 * 117.00243 * 2 1 4 4 C 1.38686 * 120.11959 * 0.21700 * 3 2 1 5 5 C 1.38060 * 120.10595 * 180.25597 * 4 3 2 6 6 C 1.38724 * 120.37038 * 359.78196 * 5 4 3 7 7 F 1.35104 * 119.87907 * 179.97438 * 6 5 4 8 8 C 1.37989 * 120.24528 * 359.97438 * 6 5 4 9 9 C 1.39714 * 119.88295 * 359.97438 * 8 6 5 10 10 C 1.47541 * 120.17937 * 179.97438 * 9 8 6 11 11 O 1.21591 * 119.99916 * 180.02562 * 10 9 8 12 12 N 1.34770 * 120.00206 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00201 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47045 * 180.02562 * 13 12 10 15 15 H 1.09001 * 110.63879 * 303.30960 * 14 13 12 16 16 C 1.54318 * 110.72258 * 66.45347 * 14 13 12 17 17 N 1.47027 * 107.27459 * 140.55680 * 16 14 13 18 18 C 1.36937 * 125.65026 * 181.02435 * 17 16 14 19 19 H 1.08003 * 119.99665 * 13.62512 * 18 17 16 20 20 C 1.38808 * 120.00102 * 193.62441 * 18 17 16 21 21 N 1.31624 * 119.99534 * 27.27128 * 20 18 17 22 22 Si 1.86798 * 120.00303 * 207.27163 * 20 18 17 23 23 H 1.48497 * 109.46783 * 90.00165 * 22 20 18 24 24 H 1.48498 * 109.47016 * 210.00269 * 22 20 18 25 25 H 1.48497 * 109.46989 * 329.99865 * 22 20 18 26 26 C 1.47426 * 108.69863 * 1.28529 * 17 16 14 27 27 C 1.55133 * 104.72293 * 335.55631 * 26 17 16 28 28 H 1.08996 * 110.90182 * 155.28056 * 27 26 17 29 29 O 1.42904 * 111.22355 * 279.17321 * 27 26 17 30 30 H 1.08992 * 109.47403 * 59.99376 * 1 2 3 31 31 H 1.08996 * 109.47142 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46515 * 299.99294 * 1 2 3 33 33 H 1.07997 * 119.94937 * 0.02562 * 4 3 2 34 34 H 1.08005 * 119.81292 * 179.76466 * 5 4 3 35 35 H 1.08000 * 120.05549 * 179.97438 * 8 6 5 36 36 H 0.97010 * 119.99617 * 0.02562 * 12 10 9 37 37 H 1.09001 * 109.47151 * 59.99686 * 13 12 10 38 38 H 1.09003 * 109.46712 * 300.00033 * 13 12 10 39 39 H 1.09002 * 109.88248 * 21.13531 * 16 14 13 40 40 H 1.09004 * 109.88149 * 259.97147 * 16 14 13 41 41 H 0.97002 * 120.00050 * 5.85271 * 21 20 18 42 42 H 1.08997 * 110.36302 * 94.48562 * 26 17 16 43 43 H 1.08997 * 110.36398 * 216.80803 * 26 17 16 44 44 H 0.96701 * 114.00219 * 292.20910 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2923 2.3738 0.0045 5 6 1.9194 3.6038 -0.0008 6 6 3.3042 3.6849 -0.0062 7 9 3.9075 4.8938 -0.0119 8 6 4.0678 2.5356 -0.0057 9 6 3.4441 1.2854 0.0008 10 6 4.2542 0.0523 0.0007 11 8 3.7080 -1.0339 0.0059 12 7 5.5997 0.1300 -0.0050 13 6 6.4041 -1.0944 -0.0044 14 6 7.8897 -0.7286 -0.0110 15 1 8.1256 -0.0953 -0.8662 16 6 8.2869 -0.0344 1.3087 17 7 9.6161 -0.5383 1.6842 18 6 10.3163 -0.1838 2.8064 19 1 9.8203 0.3427 3.6085 20 6 11.6634 -0.5011 2.9131 21 7 12.3965 -0.6322 1.8278 22 14 12.4358 -0.7421 4.5967 23 1 12.3234 -2.1688 4.9931 24 1 13.8683 -0.3543 4.5442 25 1 11.7297 0.1051 5.5911 26 6 10.0729 -1.4836 0.6493 27 6 8.7696 -2.0065 -0.0100 28 1 8.9593 -2.3512 -1.0265 29 8 8.1713 -3.0398 0.7751 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5137 0.8901 33 1 0.2137 2.3186 0.0085 34 1 1.3284 4.5078 -0.0011 35 1 5.1458 2.6024 -0.0103 36 1 6.0355 0.9967 -0.0087 37 1 6.1705 -1.6831 -0.8916 38 1 6.1777 -1.6774 0.8883 39 1 7.5644 -0.2779 2.0877 40 1 8.3275 1.0450 1.1621 41 1 12.0183 -0.4245 0.9590 42 1 10.6932 -0.9707 -0.0857 43 1 10.6242 -2.3066 1.1040 44 1 8.6854 -3.8584 0.8055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958304308.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:27 Heat of formation + Delta-G solvation = -133.454931 kcal Electronic energy + Delta-G solvation = -29220.617835 eV Core-core repulsion = 24859.886615 eV Total energy + Delta-G solvation = -4360.731220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.88621 -41.70090 -40.51641 -39.70394 -38.19328 -36.56833 -36.19881 -34.16028 -32.83519 -31.13773 -30.83334 -29.67096 -28.15976 -27.12704 -25.83803 -24.62781 -23.18528 -22.39758 -21.60017 -21.27367 -19.77327 -19.56624 -18.70750 -18.37873 -18.09370 -17.18836 -17.01852 -16.59177 -16.43103 -16.39077 -16.30154 -15.90008 -15.85960 -15.62265 -15.53553 -15.15048 -14.94796 -14.50759 -14.12891 -14.04143 -13.89947 -13.82654 -13.34815 -13.17317 -12.88178 -12.74950 -12.56524 -12.39286 -12.26799 -12.17963 -11.92062 -11.91545 -11.80887 -11.63719 -10.98891 -10.88675 -10.55910 -10.41897 -10.11177 -9.23482 -9.02744 -8.34315 -5.32897 -0.41238 0.06009 1.55942 1.63031 1.70280 1.81111 2.03076 2.23901 2.57585 2.61255 3.11059 3.13938 3.20823 3.41856 3.48588 3.56257 3.75076 3.76646 3.85061 3.93919 4.00997 4.26462 4.29605 4.33575 4.39884 4.40601 4.51121 4.53159 4.68002 4.73634 4.80032 4.83238 4.86788 4.95898 5.00588 5.01969 5.08114 5.22534 5.35395 5.54007 5.61739 6.27722 6.29895 6.46249 6.83063 6.91308 7.14711 7.68153 8.25208 8.98791 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.002656 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.306436 B =10538.551953 C =11606.992159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.311 6.311 3 C 0.165 3.835 4 C -0.181 4.181 5 C -0.071 4.071 6 C 0.040 3.960 7 F -0.143 7.143 8 C -0.082 4.082 9 C -0.169 4.169 10 C 0.556 3.444 11 O -0.558 6.558 12 N -0.718 5.718 13 C 0.157 3.843 14 C -0.092 4.092 15 H 0.116 0.884 16 C 0.143 3.857 17 N -0.622 5.622 18 C -0.344 4.344 19 H 0.055 0.945 20 C -0.076 4.076 21 N -0.947 5.947 22 Si 1.116 2.884 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.275 1.275 26 C 0.119 3.881 27 C 0.106 3.894 28 H 0.101 0.899 29 O -0.566 6.566 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.180 0.820 34 H 0.176 0.824 35 H 0.154 0.846 36 H 0.408 0.592 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.015 0.985 40 H 0.026 0.974 41 H 0.258 0.742 42 H 0.021 0.979 43 H 0.027 0.973 44 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.209 6.296 -8.530 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.223 6.223 3 C 0.117 3.883 4 C -0.199 4.199 5 C -0.089 4.089 6 C 0.021 3.979 7 F -0.121 7.121 8 C -0.101 4.101 9 C -0.173 4.173 10 C 0.345 3.655 11 O -0.438 6.438 12 N -0.371 5.371 13 C 0.034 3.966 14 C -0.111 4.111 15 H 0.134 0.866 16 C 0.018 3.982 17 N -0.349 5.349 18 C -0.472 4.472 19 H 0.073 0.927 20 C -0.272 4.272 21 N -0.591 5.591 22 Si 0.941 3.059 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.201 1.201 26 C -0.006 4.006 27 C 0.045 3.955 28 H 0.119 0.881 29 O -0.373 6.373 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.197 0.803 34 H 0.194 0.806 35 H 0.171 0.829 36 H 0.245 0.755 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.044 0.956 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.045 0.955 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -24.527 5.410 -7.551 26.227 hybrid contribution -0.243 0.761 -0.670 1.042 sum -24.770 6.171 -8.221 26.819 Atomic orbital electron populations 1.23522 0.76122 1.05760 1.03130 1.86381 1.23592 1.25808 1.86470 1.19328 0.90783 0.86121 0.92115 1.21431 1.02229 0.89615 1.06664 1.21491 0.92020 1.00117 0.95314 1.17518 0.91805 0.80012 1.08597 1.91518 1.83920 1.42204 1.94500 1.21232 1.01452 0.89738 0.97676 1.19095 0.91603 0.92826 1.13823 1.18226 0.82188 0.88801 0.76315 1.90800 1.72241 1.30038 1.50682 1.45906 1.05645 1.10548 1.74956 1.20910 0.87697 0.85965 1.02079 1.22472 0.93781 0.96306 0.98550 0.86580 1.21420 0.86783 0.95743 0.94263 1.44675 1.17267 1.48639 1.24300 1.20021 0.93934 1.38873 0.94379 0.92706 1.27013 0.92803 1.00028 1.07360 1.70879 1.37355 1.51388 0.99468 0.82828 0.74846 0.76981 0.71285 1.21263 1.21693 1.20077 1.22276 0.95220 0.92275 0.90877 1.22961 0.90889 0.87575 0.94056 0.88107 1.86426 1.50725 1.26032 1.74159 0.90310 0.87267 0.90590 0.80263 0.80645 0.82892 0.75498 0.90636 0.92865 0.96649 0.95623 0.93103 0.96131 0.95489 0.75973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.31 -7.28 8.57 -69.29 -0.59 -7.87 16 3 C 0.17 3.51 6.70 22.83 0.15 3.66 16 4 C -0.18 -2.32 9.03 22.33 0.20 -2.12 16 5 C -0.07 -0.88 10.01 22.34 0.22 -0.65 16 6 C 0.04 0.71 7.28 22.33 0.16 0.87 16 7 F -0.14 -2.79 17.26 44.97 0.78 -2.01 16 8 C -0.08 -1.63 9.51 22.57 0.21 -1.42 16 9 C -0.17 -4.13 5.88 -20.01 -0.12 -4.25 16 10 C 0.56 16.99 7.76 86.70 0.67 17.66 16 11 O -0.56 -21.18 15.16 16.93 0.26 -20.92 16 12 N -0.72 -19.77 5.35 -466.27 -2.49 -22.27 16 13 C 0.16 4.84 4.59 86.38 0.40 5.24 16 14 C -0.09 -2.95 2.94 -9.61 -0.03 -2.98 16 15 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 16 C 0.14 5.96 6.52 86.73 0.57 6.52 16 17 N -0.62 -32.07 3.33 -691.53 -2.30 -34.37 16 18 C -0.34 -20.02 10.05 84.03 0.84 -19.17 16 19 H 0.06 3.23 7.96 -2.91 -0.02 3.21 16 20 C -0.08 -4.44 5.09 84.86 0.43 -4.01 16 21 N -0.95 -58.04 12.82 21.65 0.28 -57.76 16 22 Si 1.12 52.39 30.00 68.60 2.06 54.45 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.12 5.45 4.97 86.93 0.43 5.88 16 27 C 0.11 3.57 4.17 32.06 0.13 3.71 16 28 H 0.10 2.68 8.14 -2.39 -0.02 2.67 16 29 O -0.57 -19.44 12.23 -148.98 -1.82 -21.26 16 30 H 0.08 0.52 7.67 -2.39 -0.02 0.50 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 0.55 7.65 -2.39 -0.02 0.53 16 33 H 0.18 0.97 6.30 -2.91 -0.02 0.95 16 34 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.15 2.66 6.40 -2.91 -0.02 2.64 16 36 H 0.41 9.36 6.36 -92.70 -0.59 8.77 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.05 1.98 7.44 -2.39 -0.02 1.96 16 39 H 0.02 0.69 7.76 -2.39 -0.02 0.67 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.26 15.80 5.83 -92.71 -0.54 15.26 16 42 H 0.02 1.00 6.84 -2.39 -0.02 0.98 16 43 H 0.03 1.37 7.73 -2.39 -0.02 1.35 16 44 H 0.39 10.46 9.12 -74.06 -0.68 9.79 16 Total: -1.00 -82.24 366.17 1.58 -80.65 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.03 Total: 21.22 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 5.40 Total: 10.15 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.52 Total: -114.40 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -2.16 Total: -50.06 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.06 Total: 54.45 kcal Total: -82.24 1.58 -80.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958304308.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.801 kcal (2) G-P(sol) polarization free energy of solvation -82.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds