Wall clock time and date at job start Sat Apr 11 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35689 * 117.00233 * 2 1 4 4 C 1.38690 * 120.12668 * 0.02562 * 3 2 1 5 5 C 1.38053 * 120.11303 * 179.97438 * 4 3 2 6 6 C 1.38725 * 120.37159 * 0.02562 * 5 4 3 7 7 F 1.35095 * 119.88311 * 179.97438 * 6 5 4 8 8 C 1.37995 * 120.24398 * 359.72404 * 6 5 4 9 9 C 1.39726 * 119.87900 * 0.55251 * 8 6 5 10 10 C 1.47530 * 120.17713 * 179.72364 * 9 8 6 11 11 O 1.21596 * 120.00165 * 179.72460 * 10 9 8 12 12 N 1.34776 * 120.00482 * 359.72571 * 10 9 8 13 13 C 1.46494 * 120.00390 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47358 * 179.97438 * 13 12 10 15 15 H 1.09008 * 110.88445 * 57.42402 * 14 13 12 16 16 C 1.54908 * 111.00368 * 293.54522 * 14 13 12 17 17 N 1.47425 * 104.92961 * 204.85960 * 16 14 13 18 18 C 1.36938 * 125.65179 * 204.15650 * 17 16 14 19 19 H 1.08005 * 119.99558 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00146 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00086 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99779 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47268 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47204 * 119.99715 * 22 20 18 25 25 H 1.48508 * 109.46889 * 239.99519 * 22 20 18 26 26 C 1.47290 * 108.55742 * 24.15407 * 17 16 14 27 27 C 1.54325 * 107.30599 * 358.92448 * 26 17 16 28 28 H 1.08994 * 110.87038 * 96.25177 * 27 26 17 29 29 O 1.42903 * 110.72138 * 219.45307 * 27 26 17 30 30 H 1.09004 * 109.46562 * 300.00291 * 1 2 3 31 31 H 1.09000 * 109.46897 * 59.99501 * 1 2 3 32 32 H 1.08994 * 109.47457 * 180.02562 * 1 2 3 33 33 H 1.07999 * 119.93989 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.81734 * 180.02562 * 5 4 3 35 35 H 1.08002 * 120.06052 * 180.27197 * 8 6 5 36 36 H 0.97004 * 119.99840 * 359.97438 * 12 10 9 37 37 H 1.08994 * 109.47369 * 59.99227 * 13 12 10 38 38 H 1.09004 * 109.47192 * 299.99245 * 13 12 10 39 39 H 1.09002 * 110.36632 * 323.75356 * 16 14 13 40 40 H 1.08995 * 110.36781 * 85.96593 * 16 14 13 41 41 H 0.96999 * 120.00175 * 180.02562 * 21 20 18 42 42 H 1.09004 * 109.85762 * 239.50064 * 26 17 16 43 43 H 1.08995 * 110.00297 * 118.43011 * 26 17 16 44 44 H 0.96696 * 113.99847 * 293.52357 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2924 2.3738 0.0005 5 6 1.9195 3.6037 0.0011 6 6 3.3043 3.6849 0.0005 7 9 3.9077 4.8936 0.0005 8 6 4.0680 2.5355 0.0052 9 6 3.4441 1.2853 -0.0012 10 6 4.2542 0.0523 -0.0024 11 8 3.7079 -1.0341 -0.0029 12 7 5.5997 0.1298 -0.0029 13 6 6.4040 -1.0946 -0.0047 14 6 7.8897 -0.7289 -0.0056 15 1 8.1366 -0.1043 0.8530 16 6 8.2896 -0.0340 -1.3310 17 7 9.7349 -0.2882 -1.4720 18 6 10.6131 0.4759 -2.1933 19 1 10.2609 1.3498 -2.7214 20 6 11.9555 0.1267 -2.2467 21 7 12.3844 -0.9385 -1.6035 22 14 13.1534 1.1695 -3.2300 23 1 12.4257 2.3034 -3.8545 24 1 14.2088 1.6952 -2.3273 25 1 13.7780 0.3385 -4.2906 26 6 10.0745 -1.5004 -0.7075 27 6 8.7758 -2.0019 -0.0415 28 1 8.3071 -2.7812 -0.6424 29 8 9.0360 -2.4744 1.2818 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.2138 2.3186 0.0014 34 1 1.3286 4.5078 0.0019 35 1 5.1459 2.6022 0.0092 36 1 6.0355 0.9964 -0.0029 37 1 6.1736 -1.6794 -0.8951 38 1 6.1745 -1.6813 0.8848 39 1 7.7443 -0.4705 -2.1678 40 1 8.0969 1.0371 -1.2710 41 1 13.3226 -1.1823 -1.6405 42 1 10.8144 -1.2613 0.0564 43 1 10.4671 -2.2657 -1.3770 44 1 9.5862 -3.2689 1.3147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958304310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:33 Heat of formation + Delta-G solvation = -132.304715 kcal Electronic energy + Delta-G solvation = -29048.242542 eV Core-core repulsion = 24687.561200 eV Total energy + Delta-G solvation = -4360.681343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.85586 -41.66347 -40.38288 -39.56093 -38.16071 -36.64897 -36.07317 -34.09107 -32.82124 -31.20063 -30.80098 -29.31618 -28.13314 -27.29710 -25.77454 -24.53741 -23.14843 -22.34551 -21.63900 -21.33084 -19.65683 -18.92440 -18.60406 -18.28347 -18.01165 -17.23414 -17.02326 -16.92236 -16.51900 -16.39345 -16.26019 -15.85972 -15.70984 -15.62176 -15.48070 -14.70915 -14.54037 -14.39571 -14.08290 -13.98553 -13.81596 -13.71508 -13.27040 -13.20774 -13.10613 -12.85073 -12.76015 -12.44243 -12.25905 -12.21345 -11.91045 -11.89234 -11.78411 -11.49366 -11.00561 -10.79376 -10.74673 -10.38705 -10.08189 -9.20288 -8.94230 -7.87099 -5.23429 -0.37988 0.09283 1.46594 1.47063 1.57520 1.73657 2.05237 2.26593 2.47553 2.60903 3.14640 3.23164 3.33879 3.50750 3.54232 3.61481 3.72343 3.88397 3.97008 4.04324 4.14225 4.31492 4.36252 4.39836 4.42940 4.45446 4.54778 4.61458 4.74102 4.76353 4.83833 4.87367 4.95135 4.99018 5.04557 5.26153 5.36791 5.42267 5.47921 5.57081 5.70432 6.15451 6.30628 6.49848 6.88685 7.06195 7.17477 7.72791 8.36792 9.23543 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013637 B = 0.002702 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.712083 B =10359.105723 C =11899.965760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.310 6.310 3 C 0.166 3.834 4 C -0.182 4.182 5 C -0.071 4.071 6 C 0.040 3.960 7 F -0.143 7.143 8 C -0.081 4.081 9 C -0.169 4.169 10 C 0.558 3.442 11 O -0.558 6.558 12 N -0.715 5.715 13 C 0.150 3.850 14 C -0.090 4.090 15 H 0.087 0.913 16 C 0.139 3.861 17 N -0.625 5.625 18 C -0.240 4.240 19 H 0.087 0.913 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.979 3.021 23 H -0.263 1.263 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.161 3.839 27 C 0.097 3.903 28 H 0.076 0.924 29 O -0.569 6.569 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.179 0.821 34 H 0.175 0.825 35 H 0.154 0.846 36 H 0.409 0.591 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.056 0.944 41 H 0.247 0.753 42 H 0.020 0.980 43 H 0.014 0.986 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.116 6.695 4.885 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.222 6.222 3 C 0.117 3.883 4 C -0.200 4.200 5 C -0.090 4.090 6 C 0.020 3.980 7 F -0.122 7.122 8 C -0.100 4.100 9 C -0.173 4.173 10 C 0.346 3.654 11 O -0.437 6.437 12 N -0.368 5.368 13 C 0.026 3.974 14 C -0.110 4.110 15 H 0.105 0.895 16 C 0.014 3.986 17 N -0.352 5.352 18 C -0.369 4.369 19 H 0.105 0.895 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.807 3.193 23 H -0.188 1.188 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.035 3.965 27 C 0.037 3.963 28 H 0.094 0.906 29 O -0.377 6.377 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.197 0.803 34 H 0.192 0.808 35 H 0.172 0.828 36 H 0.246 0.754 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.032 0.968 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -26.555 6.260 4.988 27.735 hybrid contribution 1.897 0.374 -0.676 2.048 sum -24.658 6.634 4.313 25.896 Atomic orbital electron populations 1.23519 0.76164 1.05747 1.03092 1.86376 1.23539 1.25780 1.86476 1.19316 0.90794 0.86086 0.92118 1.21421 1.02202 0.89649 1.06729 1.21481 0.92041 1.00103 0.95385 1.17527 0.91794 0.80043 1.08614 1.91515 1.83919 1.42251 1.94501 1.21254 1.01502 0.89728 0.97560 1.19086 0.91553 0.92841 1.13775 1.18191 0.82109 0.88778 0.76291 1.90799 1.72226 1.29945 1.50743 1.45845 1.05552 1.10501 1.74912 1.21101 0.87628 0.86515 1.02204 1.22419 0.92847 0.96695 0.99051 0.89518 1.21772 0.84237 0.98619 0.93987 1.44674 1.03895 1.28760 1.57890 1.19526 0.88939 1.05806 1.22653 0.89472 1.25671 0.98841 0.99542 1.01988 1.70163 1.14327 1.27969 1.47631 0.84997 0.78695 0.78037 0.77524 1.18763 1.22026 1.22026 1.21634 0.93203 0.88234 0.93432 1.22882 0.94714 0.95051 0.83643 0.90640 1.86392 1.74494 1.49874 1.26897 0.90463 0.90540 0.87246 0.80342 0.80760 0.82804 0.75392 0.91527 0.91167 0.95231 0.92526 0.94393 0.96178 0.96826 0.75729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.21 16 2 O -0.31 -6.99 8.57 -69.14 -0.59 -7.58 16 3 C 0.17 3.40 6.70 22.83 0.15 3.55 16 4 C -0.18 -2.25 9.03 22.33 0.20 -2.05 16 5 C -0.07 -0.86 10.01 22.34 0.22 -0.64 16 6 C 0.04 0.69 7.28 22.33 0.16 0.85 16 7 F -0.14 -2.78 17.26 44.97 0.78 -2.00 16 8 C -0.08 -1.58 9.51 22.57 0.21 -1.36 16 9 C -0.17 -3.97 5.88 -20.01 -0.12 -4.08 16 10 C 0.56 16.32 7.76 86.69 0.67 17.00 16 11 O -0.56 -20.23 15.16 16.92 0.26 -19.97 16 12 N -0.72 -19.00 5.36 -466.29 -2.50 -21.50 16 13 C 0.15 4.42 5.12 86.38 0.44 4.86 16 14 C -0.09 -3.05 2.83 -9.40 -0.03 -3.08 16 15 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 16 C 0.14 5.39 6.40 86.85 0.56 5.94 16 17 N -0.62 -31.59 3.40 -691.30 -2.35 -33.94 16 18 C -0.24 -13.29 10.28 84.03 0.86 -12.42 16 19 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 20 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 21 N -0.95 -56.99 10.33 21.65 0.22 -56.77 16 22 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 C 0.16 7.84 5.16 86.68 0.45 8.29 16 27 C 0.10 3.60 3.80 31.78 0.12 3.72 16 28 H 0.08 2.55 8.04 -2.39 -0.02 2.53 16 29 O -0.57 -19.38 13.39 -148.98 -1.99 -21.38 16 30 H 0.08 0.49 7.66 -2.39 -0.02 0.47 16 31 H 0.08 0.50 7.66 -2.39 -0.02 0.48 16 32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.18 0.90 6.29 -2.91 -0.02 0.88 16 34 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.15 2.60 6.40 -2.91 -0.02 2.58 16 36 H 0.41 9.18 6.37 -92.71 -0.59 8.59 16 37 H 0.07 2.04 8.10 -2.39 -0.02 2.02 16 38 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.03 1.14 8.00 -2.39 -0.02 1.12 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 42 H 0.02 1.12 7.31 -2.38 -0.02 1.10 16 43 H 0.01 0.74 7.51 -2.39 -0.02 0.72 16 44 H 0.39 10.34 9.12 -74.06 -0.68 9.67 16 Total: -1.00 -77.57 368.64 1.13 -76.44 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -0.21 Total: 20.74 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 5.49 Total: 18.42 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -4.63 Total: -112.21 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -2.33 Total: -48.93 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -77.57 1.13 -76.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958304310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.863 kcal (2) G-P(sol) polarization free energy of solvation -77.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds