Wall clock time and date at job start Sat Apr 11 2020 05:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35956 * 117.00694 * 2 1 4 4 C 1.38673 * 119.98838 * 0.02562 * 3 2 1 5 5 C 1.38368 * 120.28287 * 179.97438 * 4 3 2 6 6 C 1.37893 * 120.27141 * 359.74522 * 5 4 3 7 7 C 1.39672 * 119.98038 * 0.50771 * 6 5 4 8 8 C 1.47699 * 120.14190 * 179.76717 * 7 6 5 9 9 O 1.21567 * 120.00162 * 179.72267 * 8 7 6 10 10 N 1.34776 * 120.00326 * 359.72903 * 8 7 6 11 11 C 1.46494 * 120.00390 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47358 * 179.97438 * 11 10 8 13 13 H 1.09008 * 110.88445 * 57.42402 * 12 11 10 14 14 C 1.54908 * 111.00368 * 293.54522 * 12 11 10 15 15 N 1.47425 * 104.92961 * 204.85960 * 14 12 11 16 16 C 1.36938 * 125.65179 * 204.15650 * 15 14 12 17 17 H 1.08005 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00146 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47595 * 59.99628 * 20 18 16 22 22 H 1.48504 * 109.46820 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46978 * 299.99208 * 20 18 16 24 24 C 1.47290 * 108.55742 * 24.15407 * 15 14 12 25 25 C 1.54325 * 107.30599 * 358.92448 * 24 15 14 26 26 H 1.08994 * 110.87038 * 96.25177 * 25 24 15 27 27 O 1.42903 * 110.72138 * 219.45307 * 25 24 15 28 28 C 1.38768 * 119.99736 * 180.02562 * 3 2 1 29 29 F 1.35095 * 120.13683 * 359.97438 * 28 3 2 30 30 H 1.08995 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46504 * 299.99784 * 1 2 3 32 32 H 1.08997 * 109.47015 * 59.99773 * 1 2 3 33 33 H 1.07996 * 119.85585 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.86417 * 179.97438 * 5 4 3 35 35 H 1.07995 * 120.00951 * 180.27926 * 6 5 4 36 36 H 0.97004 * 119.99840 * 359.97438 * 10 8 7 37 37 H 1.08994 * 109.47369 * 59.99227 * 11 10 8 38 38 H 1.09004 * 109.47192 * 299.99245 * 11 10 8 39 39 H 1.09002 * 110.36632 * 323.75356 * 14 12 11 40 40 H 1.08995 * 110.36781 * 85.96593 * 14 12 11 41 41 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.85762 * 239.50064 * 24 15 14 43 43 H 1.08995 * 110.00297 * 118.43011 * 24 15 14 44 44 H 0.96696 * 113.99847 * 293.52357 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2113 0.0000 4 6 1.2910 2.3743 0.0005 5 6 1.9130 3.6103 0.0011 6 6 3.2892 3.6959 0.0064 7 6 4.0610 2.5317 0.0005 8 6 5.5354 2.6193 0.0010 9 8 6.2046 1.6044 0.0010 10 7 6.1389 3.8243 0.0015 11 6 7.6013 3.9112 0.0014 12 6 8.0249 5.3814 0.0015 13 1 7.6057 5.9065 0.8598 14 6 7.6234 6.0750 -1.3242 15 7 8.5644 7.2012 -1.4637 16 6 8.3407 8.3436 -2.1849 17 1 7.4082 8.4742 -2.7139 18 6 9.3127 9.3332 -2.2368 19 7 10.4492 9.1738 -1.5925 20 14 9.0070 10.8919 -3.2200 21 1 7.8122 11.5904 -2.6818 22 1 10.1901 11.7833 -3.1150 23 1 8.7757 10.5412 -4.6443 24 6 9.7838 6.8909 -0.6979 25 6 9.5703 5.5149 -0.0326 26 1 10.0128 4.7203 -0.6333 27 8 10.1081 5.5045 1.2913 28 6 3.4322 1.2837 -0.0005 29 9 4.1704 0.1523 -0.0005 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 0.2127 2.3149 0.0014 34 1 1.3181 4.5116 0.0011 35 1 3.7703 4.6627 0.0113 36 1 5.6050 4.6342 0.0013 37 1 7.9944 3.4202 -0.8887 38 1 7.9946 3.4195 0.8912 39 1 7.7309 5.3849 -2.1610 40 1 6.5988 6.4419 -1.2652 41 1 11.1283 9.8655 -1.6284 42 1 9.9445 7.6513 0.0664 43 1 10.6436 6.8500 -1.3665 44 1 11.0711 5.5854 1.3252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958519418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:05 Heat of formation + Delta-G solvation = -106.072031 kcal Electronic energy + Delta-G solvation = -28902.201113 eV Core-core repulsion = 24542.657305 eV Total energy + Delta-G solvation = -4359.543808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.88226 -40.56225 -39.67175 -38.28305 -37.41456 -35.20129 -34.67072 -32.38286 -31.38509 -30.72506 -29.51993 -27.80703 -27.58944 -25.72119 -24.30764 -23.16175 -22.71473 -20.89905 -20.23692 -19.97430 -18.85753 -17.45185 -17.29660 -17.05823 -16.87854 -16.54621 -16.46064 -15.64143 -15.49942 -15.18096 -15.03096 -14.84782 -14.82279 -14.26994 -14.01707 -13.69056 -13.22421 -13.20687 -12.81235 -12.69641 -12.66324 -12.45893 -12.06101 -12.03621 -11.79061 -11.58130 -11.48485 -11.24837 -10.99604 -10.82725 -10.63942 -10.14098 -10.06981 -9.84245 -9.79258 -9.38501 -9.24135 -8.96653 -8.68817 -8.62490 -6.93400 -5.78541 -3.13158 0.32749 0.82129 2.56929 2.61549 3.17038 3.36279 3.40474 3.41962 3.42051 3.84283 4.25438 4.34733 4.41261 4.56750 4.59371 4.68376 4.70827 4.76373 4.91867 5.02082 5.05430 5.18624 5.41077 5.44773 5.47528 5.58919 5.65311 5.69073 5.84112 5.86268 5.98716 6.01927 6.10284 6.18495 6.32655 6.38162 6.51125 6.79013 6.81559 7.36216 7.44946 7.45975 7.71316 8.14631 8.15754 8.18030 9.12295 9.73210 10.37770 11.33195 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.002397 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.054294 B =11679.950531 C =12967.826029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.083 3.917 4 C -0.160 4.160 5 C -0.096 4.096 6 C -0.093 4.093 7 C -0.132 4.132 8 C 0.555 3.445 9 O -0.524 6.524 10 N -0.715 5.715 11 C 0.134 3.866 12 C -0.108 4.108 13 H 0.090 0.910 14 C 0.141 3.859 15 N -0.602 5.602 16 C -0.231 4.231 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.152 3.848 25 C 0.083 3.917 26 H 0.057 0.943 27 O -0.566 6.566 28 C 0.130 3.870 29 F -0.107 7.107 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.401 0.599 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.024 0.976 40 H 0.042 0.958 41 H 0.254 0.746 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.915 -13.565 4.924 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.037 3.963 4 C -0.179 4.179 5 C -0.115 4.115 6 C -0.112 4.112 7 C -0.136 4.136 8 C 0.341 3.659 9 O -0.401 6.401 10 N -0.367 5.367 11 C 0.010 3.990 12 C -0.128 4.128 13 H 0.108 0.892 14 C 0.015 3.985 15 N -0.329 5.329 16 C -0.359 4.359 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.026 3.974 25 C 0.023 3.977 26 H 0.075 0.925 27 O -0.371 6.371 28 C 0.108 3.892 29 F -0.085 7.085 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.237 0.763 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.042 0.958 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -18.786 -14.386 5.028 24.190 hybrid contribution 0.071 1.332 -0.723 1.517 sum -18.716 -13.054 4.306 23.221 Atomic orbital electron populations 1.23150 0.77709 1.04506 1.01543 1.86165 1.21835 1.25380 1.88774 1.18870 0.90440 0.86015 1.00978 1.21326 1.00555 0.91421 1.04599 1.20958 0.94279 0.97503 0.98723 1.21215 0.93890 0.97297 0.98835 1.19942 0.94425 0.92244 1.07013 1.17863 0.86458 0.84052 0.77520 1.90849 1.65559 1.34774 1.48920 1.45896 1.08463 1.07720 1.74604 1.21421 0.78229 0.96744 1.02557 1.22617 0.95821 0.93716 1.00650 0.89160 1.21608 0.94261 0.90051 0.92624 1.44352 1.13935 1.16587 1.58068 1.19008 1.00995 0.92833 1.23091 0.90293 1.24822 0.96354 0.98797 1.00413 1.69925 1.06794 1.34284 1.45946 0.86167 0.76986 0.82734 0.79662 1.21109 1.21566 1.21113 1.21864 0.89917 0.90619 0.94960 1.23118 0.92185 0.99121 0.83268 0.92473 1.86421 1.26038 1.96838 1.27840 1.16897 0.85759 0.82559 1.03952 1.91599 1.76186 1.47683 1.93036 0.87779 0.92322 0.92288 0.84051 0.84148 0.84098 0.76281 0.91116 0.90898 0.95849 0.94007 0.93591 0.92385 0.93615 0.77681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.10 10.36 -19.60 -0.20 -3.30 16 3 C 0.08 0.87 6.69 -39.23 -0.26 0.61 16 4 C -0.16 -1.18 9.03 -39.37 -0.36 -1.54 16 5 C -0.10 -0.68 10.02 -39.66 -0.40 -1.08 16 6 C -0.09 -0.83 9.54 -39.17 -0.37 -1.20 16 7 C -0.13 -1.64 5.88 -104.93 -0.62 -2.25 16 8 C 0.56 8.30 7.77 -12.40 -0.10 8.20 16 9 O -0.52 -9.84 15.34 5.31 0.08 -9.75 16 10 N -0.71 -9.50 5.36 -61.30 -0.33 -9.83 16 11 C 0.13 2.01 5.12 -4.05 -0.02 1.99 16 12 C -0.11 -1.83 2.83 -88.47 -0.25 -2.08 16 13 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 14 C 0.14 2.71 6.40 -2.53 -0.02 2.70 16 15 N -0.60 -14.82 3.40 -169.86 -0.58 -15.40 16 16 C -0.23 -6.25 10.28 -15.06 -0.15 -6.40 16 17 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -26.49 10.33 55.49 0.57 -25.92 16 20 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.15 3.55 5.16 -2.92 -0.02 3.54 16 25 C 0.08 1.53 3.80 -24.90 -0.09 1.43 16 26 H 0.06 0.98 8.04 -51.93 -0.42 0.57 16 27 O -0.57 -9.73 13.39 -35.23 -0.47 -10.20 16 28 C 0.13 1.72 7.29 -38.82 -0.28 1.44 16 29 F -0.11 -1.73 15.39 2.25 0.03 -1.69 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 32 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 33 H 0.14 0.61 6.27 -52.49 -0.33 0.28 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.14 0.97 6.40 -52.49 -0.34 0.64 16 36 H 0.40 4.38 6.37 -40.82 -0.26 4.12 16 37 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.06 1.53 7.31 -51.93 -0.38 1.15 16 43 H 0.05 1.18 7.51 -51.93 -0.39 0.79 16 44 H 0.38 5.01 9.12 45.56 0.42 5.43 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -35.37 368.75 -7.39 -42.76 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.99 Total: 5.03 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.04 Total: 6.18 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.33 Total: -51.15 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.59 Total: -23.26 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.03 Total: -1.69 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.37 -7.39 -42.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958519418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.312 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds