Wall clock time and date at job start Sat Apr 11 2020 05:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35956 * 117.00694 * 2 1 4 4 C 1.38673 * 119.98838 * 0.02562 * 3 2 1 5 5 C 1.38368 * 120.28287 * 179.97438 * 4 3 2 6 6 C 1.37893 * 120.27141 * 359.74522 * 5 4 3 7 7 C 1.39672 * 119.98038 * 0.50771 * 6 5 4 8 8 C 1.47699 * 120.14190 * 179.76717 * 7 6 5 9 9 O 1.21567 * 120.00162 * 179.72267 * 8 7 6 10 10 N 1.34776 * 120.00326 * 359.72903 * 8 7 6 11 11 C 1.46494 * 120.00390 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47358 * 179.97438 * 11 10 8 13 13 H 1.09008 * 110.88445 * 57.42402 * 12 11 10 14 14 C 1.54908 * 111.00368 * 293.54522 * 12 11 10 15 15 N 1.47425 * 104.92961 * 204.85960 * 14 12 11 16 16 C 1.36938 * 125.65179 * 204.15650 * 15 14 12 17 17 H 1.08005 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00146 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47595 * 59.99628 * 20 18 16 22 22 H 1.48504 * 109.46820 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46978 * 299.99208 * 20 18 16 24 24 C 1.47290 * 108.55742 * 24.15407 * 15 14 12 25 25 C 1.54325 * 107.30599 * 358.92448 * 24 15 14 26 26 H 1.08994 * 110.87038 * 96.25177 * 25 24 15 27 27 O 1.42903 * 110.72138 * 219.45307 * 25 24 15 28 28 C 1.38768 * 119.99736 * 180.02562 * 3 2 1 29 29 F 1.35095 * 120.13683 * 359.97438 * 28 3 2 30 30 H 1.08995 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46504 * 299.99784 * 1 2 3 32 32 H 1.08997 * 109.47015 * 59.99773 * 1 2 3 33 33 H 1.07996 * 119.85585 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.86417 * 179.97438 * 5 4 3 35 35 H 1.07995 * 120.00951 * 180.27926 * 6 5 4 36 36 H 0.97004 * 119.99840 * 359.97438 * 10 8 7 37 37 H 1.08994 * 109.47369 * 59.99227 * 11 10 8 38 38 H 1.09004 * 109.47192 * 299.99245 * 11 10 8 39 39 H 1.09002 * 110.36632 * 323.75356 * 14 12 11 40 40 H 1.08995 * 110.36781 * 85.96593 * 14 12 11 41 41 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.85762 * 239.50064 * 24 15 14 43 43 H 1.08995 * 110.00297 * 118.43011 * 24 15 14 44 44 H 0.96696 * 113.99847 * 293.52357 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2113 0.0000 4 6 1.2910 2.3743 0.0005 5 6 1.9130 3.6103 0.0011 6 6 3.2892 3.6959 0.0064 7 6 4.0610 2.5317 0.0005 8 6 5.5354 2.6193 0.0010 9 8 6.2046 1.6044 0.0010 10 7 6.1389 3.8243 0.0015 11 6 7.6013 3.9112 0.0014 12 6 8.0249 5.3814 0.0015 13 1 7.6057 5.9065 0.8598 14 6 7.6234 6.0750 -1.3242 15 7 8.5644 7.2012 -1.4637 16 6 8.3407 8.3436 -2.1849 17 1 7.4082 8.4742 -2.7139 18 6 9.3127 9.3332 -2.2368 19 7 10.4492 9.1738 -1.5925 20 14 9.0070 10.8919 -3.2200 21 1 7.8122 11.5904 -2.6818 22 1 10.1901 11.7833 -3.1150 23 1 8.7757 10.5412 -4.6443 24 6 9.7838 6.8909 -0.6979 25 6 9.5703 5.5149 -0.0326 26 1 10.0128 4.7203 -0.6333 27 8 10.1081 5.5045 1.2913 28 6 3.4322 1.2837 -0.0005 29 9 4.1704 0.1523 -0.0005 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 0.2127 2.3149 0.0014 34 1 1.3181 4.5116 0.0011 35 1 3.7703 4.6627 0.0113 36 1 5.6050 4.6342 0.0013 37 1 7.9944 3.4202 -0.8887 38 1 7.9946 3.4195 0.8912 39 1 7.7309 5.3849 -2.1610 40 1 6.5988 6.4419 -1.2652 41 1 11.1283 9.8655 -1.6284 42 1 9.9445 7.6513 0.0664 43 1 10.6436 6.8500 -1.3665 44 1 11.0711 5.5854 1.3252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958519418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:04 Heat of formation + Delta-G solvation = -133.723977 kcal Electronic energy + Delta-G solvation = -28903.400191 eV Core-core repulsion = 24542.657305 eV Total energy + Delta-G solvation = -4360.742886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.88197 -41.40511 -40.65491 -39.76088 -38.19112 -36.65112 -36.16399 -34.07090 -32.40235 -31.51779 -30.92953 -29.27359 -28.26058 -27.31273 -25.67184 -24.27139 -23.51330 -22.33073 -21.67073 -21.30445 -19.76644 -18.87173 -18.37874 -18.22632 -17.94508 -17.64016 -17.31252 -17.00054 -16.62766 -16.44290 -16.05351 -15.77884 -15.72008 -15.64608 -15.53512 -14.88003 -14.72446 -14.39348 -14.00788 -13.94856 -13.71826 -13.42171 -13.31018 -13.21009 -13.08681 -12.75092 -12.67290 -12.45635 -12.33401 -12.30006 -12.11655 -11.90560 -11.78823 -11.50377 -11.12798 -10.81537 -10.71228 -10.31949 -9.98054 -9.33907 -8.92611 -7.84940 -5.21383 -0.46077 0.12551 1.48099 1.51119 1.57177 1.68647 1.80015 2.28520 2.49594 2.58659 3.11462 3.23272 3.35262 3.45663 3.56404 3.70901 3.76317 3.86566 3.89168 4.06095 4.14723 4.28272 4.37284 4.39387 4.41534 4.46282 4.61159 4.73111 4.74224 4.78598 4.87261 4.94389 4.96021 5.05603 5.21064 5.23592 5.33749 5.43133 5.48777 5.49503 5.71751 6.17034 6.22611 6.39529 6.88395 7.06000 7.07568 7.74847 8.38888 9.25390 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.002397 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.054294 B =11679.950531 C =12967.826029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.337 6.337 3 C 0.078 3.922 4 C -0.144 4.144 5 C -0.081 4.081 6 C -0.090 4.090 7 C -0.150 4.150 8 C 0.553 3.447 9 O -0.573 6.573 10 N -0.703 5.703 11 C 0.146 3.854 12 C -0.089 4.089 13 H 0.091 0.909 14 C 0.139 3.861 15 N -0.625 5.625 16 C -0.241 4.241 17 H 0.090 0.910 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.980 3.020 21 H -0.274 1.274 22 H -0.298 1.298 23 H -0.277 1.277 24 C 0.161 3.839 25 C 0.096 3.904 26 H 0.073 0.927 27 O -0.569 6.569 28 C 0.083 3.917 29 F -0.138 7.138 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.180 0.820 34 H 0.183 0.817 35 H 0.163 0.837 36 H 0.415 0.585 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.028 0.972 40 H 0.063 0.937 41 H 0.246 0.754 42 H 0.021 0.979 43 H 0.012 0.988 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.551 -12.669 4.875 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.252 6.252 3 C 0.031 3.969 4 C -0.163 4.163 5 C -0.099 4.099 6 C -0.108 4.108 7 C -0.154 4.154 8 C 0.341 3.659 9 O -0.453 6.453 10 N -0.355 5.355 11 C 0.022 3.978 12 C -0.108 4.108 13 H 0.109 0.891 14 C 0.014 3.986 15 N -0.352 5.352 16 C -0.370 4.370 17 H 0.108 0.892 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.808 3.192 21 H -0.200 1.200 22 H -0.225 1.225 23 H -0.203 1.203 24 C 0.035 3.965 25 C 0.035 3.965 26 H 0.091 0.909 27 O -0.377 6.377 28 C 0.062 3.938 29 F -0.117 7.117 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.197 0.803 34 H 0.200 0.800 35 H 0.180 0.820 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.039 0.961 43 H 0.030 0.970 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -22.469 -13.487 4.983 26.675 hybrid contribution 1.079 1.039 -0.696 1.652 sum -21.390 -12.448 4.287 25.117 Atomic orbital electron populations 1.23506 0.75145 1.06077 1.03198 1.86137 1.24558 1.25728 1.88760 1.19019 0.89609 0.87355 1.00878 1.21806 1.02227 0.90273 1.01958 1.21470 0.93610 0.98846 0.95968 1.21534 0.94843 0.96726 0.97746 1.19821 0.92878 0.93351 1.09389 1.18317 0.87699 0.83511 0.76356 1.90817 1.66872 1.36359 1.51264 1.45721 1.07764 1.08046 1.73992 1.21153 0.79371 0.95004 1.02231 1.22412 0.94531 0.94540 0.99363 0.89071 1.21786 0.94329 0.88727 0.93782 1.44658 1.15322 1.17347 1.57855 1.19466 1.01181 0.93582 1.22732 0.89232 1.25687 0.96406 1.02064 1.01994 1.70153 1.07579 1.34851 1.47608 0.85130 0.76651 0.78931 0.78487 1.19962 1.22464 1.20309 1.21620 0.88903 0.92504 0.93427 1.22897 0.93610 0.96345 0.83635 0.90895 1.86390 1.27819 1.96575 1.26869 1.17426 0.87184 0.82097 1.07097 1.91501 1.77166 1.49282 1.93727 0.86556 0.90501 0.90565 0.80301 0.80019 0.81957 0.74656 0.91610 0.91217 0.95411 0.91871 0.94441 0.96096 0.96996 0.75751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.22 16 2 O -0.34 -6.51 10.36 -93.06 -0.96 -7.48 16 3 C 0.08 1.54 6.69 22.50 0.15 1.69 16 4 C -0.14 -1.56 9.03 22.40 0.20 -1.36 16 5 C -0.08 -0.76 10.02 22.22 0.22 -0.54 16 6 C -0.09 -1.32 9.54 22.53 0.21 -1.10 16 7 C -0.15 -3.64 5.88 -20.07 -0.12 -3.76 16 8 C 0.55 16.59 7.77 86.74 0.67 17.27 16 9 O -0.57 -22.38 15.34 -3.93 -0.06 -22.44 16 10 N -0.70 -17.77 5.36 -466.14 -2.50 -20.27 16 11 C 0.15 4.25 5.12 86.38 0.44 4.69 16 12 C -0.09 -2.88 2.83 -9.40 -0.03 -2.90 16 13 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 14 C 0.14 5.13 6.40 86.85 0.56 5.69 16 15 N -0.62 -30.71 3.40 -691.30 -2.35 -33.06 16 16 C -0.24 -12.95 10.28 84.03 0.86 -12.09 16 17 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 18 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 19 N -0.95 -56.34 10.33 21.65 0.22 -56.12 16 20 Si 0.98 44.50 29.55 68.60 2.03 46.53 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 24 C 0.16 7.73 5.16 86.68 0.45 8.18 16 25 C 0.10 3.47 3.80 31.78 0.12 3.59 16 26 H 0.07 2.45 8.04 -2.39 -0.02 2.43 16 27 O -0.57 -19.12 13.39 -148.98 -1.99 -21.12 16 28 C 0.08 2.25 7.29 22.76 0.17 2.42 16 29 F -0.14 -4.82 15.39 44.97 0.69 -4.12 16 30 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.27 7.66 -2.38 -0.02 0.25 16 32 H 0.08 0.28 7.66 -2.39 -0.02 0.27 16 33 H 0.18 0.54 6.27 -2.91 -0.02 0.53 16 34 H 0.18 0.29 8.06 -2.91 -0.02 0.26 16 35 H 0.16 1.58 6.40 -2.91 -0.02 1.56 16 36 H 0.42 8.01 6.37 -92.71 -0.59 7.42 16 37 H 0.07 2.01 8.10 -2.39 -0.02 1.99 16 38 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.03 1.03 8.00 -2.39 -0.02 1.02 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 42 H 0.02 1.14 7.31 -2.38 -0.02 1.13 16 43 H 0.01 0.64 7.51 -2.39 -0.02 0.62 16 44 H 0.39 10.25 9.12 -74.06 -0.68 9.57 16 Total: -1.00 -81.82 368.75 0.36 -81.46 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.21 Total: 16.98 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 5.49 Total: 19.64 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -4.63 Total: -109.45 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -3.02 Total: -51.04 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.69 Total: -4.12 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -81.82 0.36 -81.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958519418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.263 kcal (2) G-P(sol) polarization free energy of solvation -81.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds