Wall clock time and date at job start Sat Apr 11 2020 05:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34947 * 119.70312 * 2 1 4 4 C 1.38320 * 119.01784 * 180.02562 * 3 2 1 5 5 C 1.47304 * 120.73602 * 179.97438 * 4 3 2 6 6 O 1.21623 * 120.00033 * 185.88290 * 5 4 3 7 7 N 1.34775 * 120.00321 * 5.89243 * 5 4 3 8 8 C 1.46500 * 120.00576 * 175.09852 * 7 5 4 9 9 C 1.52999 * 109.46987 * 179.97438 * 8 7 5 10 10 H 1.08997 * 110.78288 * 51.76045 * 9 8 7 11 11 C 1.54318 * 110.71979 * 288.51713 * 9 8 7 12 12 N 1.47025 * 107.27127 * 219.44813 * 11 9 8 13 13 C 1.36940 * 125.64573 * 178.98490 * 12 11 9 14 14 H 1.07991 * 120.00398 * 344.56406 * 13 12 11 15 15 C 1.38823 * 119.99722 * 164.55817 * 13 12 11 16 16 N 1.31617 * 119.99622 * 2.00331 * 15 13 12 17 17 Si 1.86798 * 119.99791 * 182.00464 * 15 13 12 18 18 H 1.48498 * 109.47188 * 94.99332 * 17 15 13 19 19 H 1.48502 * 109.46488 * 214.99067 * 17 15 13 20 20 H 1.48497 * 109.47237 * 334.98790 * 17 15 13 21 21 C 1.47423 * 108.70383 * 358.94039 * 12 11 9 22 22 C 1.54910 * 104.83095 * 24.13119 * 21 12 11 23 23 H 1.08995 * 111.03751 * 81.07560 * 22 21 12 24 24 O 1.42902 * 111.00375 * 204.91648 * 22 21 12 25 25 C 1.42097 * 118.52922 * 0.25312 * 4 3 2 26 26 O 1.35006 * 120.33756 * 179.74537 * 25 4 3 27 27 N 1.32218 * 119.32810 * 359.48961 * 25 4 3 28 28 C 1.33322 * 120.93400 * 0.52036 * 27 25 4 29 29 O 1.21901 * 119.20084 * 179.70427 * 28 27 25 30 30 H 1.09011 * 109.47047 * 89.99840 * 1 2 3 31 31 H 1.09002 * 109.47445 * 209.98978 * 1 2 3 32 32 H 1.08996 * 109.47180 * 329.99933 * 1 2 3 33 33 H 1.07997 * 120.49255 * 0.05325 * 3 2 1 34 34 H 0.97010 * 119.99562 * 355.09123 * 7 5 4 35 35 H 1.08992 * 109.47055 * 59.99110 * 8 7 5 36 36 H 1.09007 * 109.46483 * 299.99370 * 8 7 5 37 37 H 1.09000 * 109.88451 * 338.86403 * 11 9 8 38 38 H 1.08997 * 109.88235 * 100.03061 * 11 9 8 39 39 H 0.97004 * 119.99472 * 179.97438 * 16 15 13 40 40 H 1.08994 * 110.36569 * 265.29352 * 21 12 11 41 41 H 1.09001 * 110.36466 * 142.96601 * 21 12 11 42 42 H 0.96697 * 113.99708 * 292.19839 * 24 22 21 43 43 H 0.96696 * 114.00495 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1337 1.1722 0.0000 4 6 3.5168 1.1556 -0.0005 5 6 4.2847 2.4126 -0.0011 6 8 5.4958 2.3853 -0.1096 7 7 3.6453 3.5930 0.1187 8 6 4.4145 4.8352 0.2262 9 6 3.4547 6.0203 0.3499 10 1 2.7309 5.8502 1.1469 11 6 2.7382 6.2849 -0.9910 12 7 2.6539 7.7429 -1.1606 13 6 2.1044 8.3909 -2.2346 14 1 1.9133 7.8519 -3.1506 15 6 1.7927 9.7408 -2.1455 16 7 2.0617 10.4069 -1.0427 17 14 0.9916 10.6116 -3.5910 18 1 -0.4819 10.6224 -3.4075 19 1 1.4913 12.0080 -3.6661 20 1 1.3288 9.8969 -4.8482 21 6 3.2579 8.3916 0.0174 22 6 4.2377 7.3379 0.5914 23 1 5.1793 7.3390 0.0424 24 8 4.4611 7.5526 1.9865 25 6 4.1804 -0.1008 -0.0066 26 8 5.5292 -0.1596 -0.0125 27 7 3.4637 -1.2119 -0.0012 28 6 2.1312 -1.1679 -0.0007 29 8 1.5017 -2.2117 -0.0011 30 1 -0.3634 0.0000 -1.0278 31 1 -0.3634 -0.8901 0.5137 32 1 -0.3633 0.8899 0.5138 33 1 1.5969 2.1093 0.0009 34 1 2.6757 3.6201 0.1336 35 1 5.0312 4.9589 -0.6640 36 1 5.0539 4.7914 1.1080 37 1 3.3108 5.8490 -1.8097 38 1 1.7365 5.8559 -0.9670 39 1 1.8443 11.3502 -0.9807 40 1 2.4901 8.6353 0.7516 41 1 3.7987 9.2900 -0.2800 42 1 4.9470 8.3643 2.1866 43 1 5.8838 -1.0592 -0.0167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958666445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:07 Heat of formation + Delta-G solvation = -77.359668 kcal Electronic energy + Delta-G solvation = -29208.976309 eV Core-core repulsion = 24870.597524 eV Total energy + Delta-G solvation = -4338.378785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.31862 -39.88483 -38.94100 -38.18670 -37.19107 -35.26082 -35.05831 -34.74091 -32.63800 -31.76385 -29.67751 -28.13238 -27.62142 -25.78166 -25.46580 -24.27906 -23.18539 -21.26379 -20.42733 -20.17687 -19.97806 -18.66853 -18.29651 -17.12189 -17.07447 -16.89467 -16.47020 -16.02544 -15.53932 -15.40226 -15.07143 -14.91368 -14.81156 -14.18059 -14.11219 -13.96758 -13.74984 -13.60378 -13.15745 -13.10315 -12.94093 -12.51482 -12.05061 -11.99644 -11.71193 -11.36014 -11.30730 -11.04168 -10.89855 -10.72141 -10.51675 -10.50228 -10.17013 -10.09871 -9.97110 -9.81490 -9.28700 -9.22070 -8.97920 -8.72790 -6.92826 -5.88822 -3.26148 0.05249 0.85356 1.83191 2.72998 2.80997 2.93654 3.30537 3.36546 3.38295 3.39584 3.60735 3.83344 4.25416 4.34243 4.50451 4.59643 4.67488 4.70664 4.79795 4.95491 5.07545 5.10897 5.36418 5.39279 5.41441 5.57431 5.73911 5.83482 5.93245 5.95164 6.09980 6.22857 6.33636 6.47927 6.70815 6.75933 7.24597 7.25985 7.35600 7.43770 7.63427 7.67602 8.05213 8.08038 8.15109 9.04405 9.65321 10.32071 11.23208 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.002567 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.955333 B =10902.986811 C =12019.602415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.518 5.518 3 C 0.244 3.756 4 C -0.294 4.294 5 C 0.577 3.423 6 O -0.514 6.514 7 N -0.724 5.724 8 C 0.136 3.864 9 C -0.105 4.105 10 H 0.087 0.913 11 C 0.140 3.860 12 N -0.600 5.600 13 C -0.235 4.235 14 H 0.077 0.923 15 C -0.002 4.002 16 N -0.917 5.917 17 Si 0.912 3.088 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.149 3.851 22 C 0.079 3.921 23 H 0.061 0.939 24 O -0.568 6.568 25 C 0.496 3.504 26 O -0.411 6.411 27 N -0.616 5.616 28 C 0.654 3.346 29 O -0.526 6.526 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.190 0.810 34 H 0.394 0.606 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.255 0.745 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.377 0.623 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 -15.878 4.894 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.231 5.231 3 C 0.102 3.898 4 C -0.307 4.307 5 C 0.362 3.638 6 O -0.390 6.390 7 N -0.377 5.377 8 C 0.012 3.988 9 C -0.124 4.124 10 H 0.105 0.895 11 C 0.014 3.986 12 N -0.327 5.327 13 C -0.363 4.363 14 H 0.095 0.905 15 C -0.200 4.200 16 N -0.563 5.563 17 Si 0.742 3.258 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.023 3.977 22 C 0.018 3.982 23 H 0.079 0.921 24 O -0.373 6.373 25 C 0.293 3.707 26 O -0.202 6.202 27 N -0.375 5.375 28 C 0.356 3.644 29 O -0.400 6.400 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.206 0.794 34 H 0.229 0.771 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.224 0.776 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 0.654 -17.228 4.823 17.902 hybrid contribution -0.930 1.322 -0.796 1.802 sum -0.276 -15.906 4.027 16.410 Atomic orbital electron populations 1.22388 0.75226 1.06014 1.05038 1.46283 1.11160 1.07102 1.58540 1.22918 0.91828 0.91447 0.83559 1.19775 0.91770 0.94328 1.24844 1.17211 0.87190 0.82132 0.77309 1.90870 1.12981 1.86605 1.48531 1.45894 1.10106 1.06379 1.75284 1.21469 0.93805 0.80986 1.02493 1.22403 0.97545 0.93082 0.99381 0.89457 1.21407 0.96640 0.87775 0.92731 1.44253 1.69239 0.98900 1.20339 1.19010 1.34206 0.92569 0.90538 0.90526 1.24948 1.00402 0.97167 0.97435 1.69912 1.51599 1.08728 1.26052 0.86101 0.79253 0.78999 0.81412 1.21455 1.21609 1.20471 1.22050 0.93284 0.93585 0.88743 1.23307 0.97839 0.95799 0.81212 0.92102 1.86373 1.79865 1.46799 1.24272 1.20193 0.84936 0.88064 0.77461 1.85281 1.13996 1.36304 1.84643 1.69736 1.05477 1.27246 1.35003 1.17452 0.84745 0.82985 0.79205 1.91001 1.65924 1.29970 1.53100 0.89525 0.87922 0.88667 0.79360 0.77118 0.90869 0.90895 0.95311 0.95794 0.93513 0.94659 0.90771 0.77571 0.73067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 10.35 59.85 0.62 0.86 16 2 N -0.52 -4.06 2.96 -128.87 -0.38 -4.44 16 3 C 0.24 1.54 9.90 -16.15 -0.16 1.38 16 4 C -0.29 -2.83 5.90 -104.70 -0.62 -3.45 16 5 C 0.58 6.89 7.75 -12.57 -0.10 6.79 16 6 O -0.51 -8.18 15.32 -15.90 -0.24 -8.42 16 7 N -0.72 -7.56 5.42 -61.42 -0.33 -7.89 16 8 C 0.14 1.77 5.02 -4.04 -0.02 1.75 16 9 C -0.10 -1.58 2.70 -88.78 -0.24 -1.82 16 10 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 11 C 0.14 2.52 6.75 -3.07 -0.02 2.50 16 12 N -0.60 -14.07 3.39 -170.08 -0.58 -14.64 16 13 C -0.24 -6.14 10.23 -15.05 -0.15 -6.29 16 14 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 15 C 0.00 -0.06 5.48 -17.43 -0.10 -0.16 16 16 N -0.92 -25.42 10.57 55.49 0.59 -24.84 16 17 Si 0.91 20.92 29.55 -169.99 -5.02 15.89 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.15 3.30 5.15 -2.53 -0.01 3.29 16 22 C 0.08 1.35 3.88 -24.58 -0.10 1.25 16 23 H 0.06 1.01 8.05 -51.93 -0.42 0.60 16 24 O -0.57 -8.88 13.47 -35.23 -0.47 -9.35 16 25 C 0.50 5.36 7.93 -15.91 -0.13 5.24 16 26 O -0.41 -4.11 11.78 -37.89 -0.45 -4.56 16 27 N -0.62 -7.55 10.38 -16.47 -0.17 -7.72 16 28 C 0.65 8.08 8.32 -88.50 -0.74 7.34 16 29 O -0.53 -8.12 16.67 5.01 0.08 -8.04 16 30 H 0.09 0.31 8.14 -51.92 -0.42 -0.12 16 31 H 0.10 0.58 7.36 -51.93 -0.38 0.19 16 32 H 0.09 0.12 8.02 -51.93 -0.42 -0.30 16 33 H 0.19 0.38 6.48 -52.49 -0.34 0.04 16 34 H 0.39 2.90 6.58 -40.82 -0.27 2.64 16 35 H 0.07 1.05 7.93 -51.93 -0.41 0.63 16 36 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.03 0.51 7.68 -51.93 -0.40 0.12 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.04 0.87 8.06 -51.93 -0.42 0.45 16 41 H 0.07 1.83 6.92 -51.93 -0.36 1.48 16 42 H 0.38 4.51 9.12 45.56 0.42 4.93 16 43 H 0.41 2.20 8.98 45.56 0.41 2.61 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -38.39 364.08 -7.08 -45.47 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.83 Total: 4.37 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: -1.76 Total: 18.68 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.88 Total: -59.53 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.08 Total: -30.37 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.39 -7.08 -45.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958666445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.887 kcal (2) G-P(sol) polarization free energy of solvation -38.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds