Wall clock time and date at job start Sat Apr 11 2020 05:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34947 * 119.70312 * 2 1 4 4 C 1.38320 * 119.01784 * 180.02562 * 3 2 1 5 5 C 1.47304 * 120.73602 * 179.97438 * 4 3 2 6 6 O 1.21623 * 120.00033 * 185.88290 * 5 4 3 7 7 N 1.34775 * 120.00321 * 5.89243 * 5 4 3 8 8 C 1.46500 * 120.00576 * 175.09852 * 7 5 4 9 9 C 1.52999 * 109.46987 * 179.97438 * 8 7 5 10 10 H 1.08997 * 110.78288 * 51.76045 * 9 8 7 11 11 C 1.54318 * 110.71979 * 288.51713 * 9 8 7 12 12 N 1.47025 * 107.27127 * 219.44813 * 11 9 8 13 13 C 1.36940 * 125.64573 * 178.98490 * 12 11 9 14 14 H 1.07991 * 120.00398 * 344.56406 * 13 12 11 15 15 C 1.38823 * 119.99722 * 164.55817 * 13 12 11 16 16 N 1.31617 * 119.99622 * 2.00331 * 15 13 12 17 17 Si 1.86798 * 119.99791 * 182.00464 * 15 13 12 18 18 H 1.48498 * 109.47188 * 94.99332 * 17 15 13 19 19 H 1.48502 * 109.46488 * 214.99067 * 17 15 13 20 20 H 1.48497 * 109.47237 * 334.98790 * 17 15 13 21 21 C 1.47423 * 108.70383 * 358.94039 * 12 11 9 22 22 C 1.54910 * 104.83095 * 24.13119 * 21 12 11 23 23 H 1.08995 * 111.03751 * 81.07560 * 22 21 12 24 24 O 1.42902 * 111.00375 * 204.91648 * 22 21 12 25 25 C 1.42097 * 118.52922 * 0.25312 * 4 3 2 26 26 O 1.35006 * 120.33756 * 179.74537 * 25 4 3 27 27 N 1.32218 * 119.32810 * 359.48961 * 25 4 3 28 28 C 1.33322 * 120.93400 * 0.52036 * 27 25 4 29 29 O 1.21901 * 119.20084 * 179.70427 * 28 27 25 30 30 H 1.09011 * 109.47047 * 89.99840 * 1 2 3 31 31 H 1.09002 * 109.47445 * 209.98978 * 1 2 3 32 32 H 1.08996 * 109.47180 * 329.99933 * 1 2 3 33 33 H 1.07997 * 120.49255 * 0.05325 * 3 2 1 34 34 H 0.97010 * 119.99562 * 355.09123 * 7 5 4 35 35 H 1.08992 * 109.47055 * 59.99110 * 8 7 5 36 36 H 1.09007 * 109.46483 * 299.99370 * 8 7 5 37 37 H 1.09000 * 109.88451 * 338.86403 * 11 9 8 38 38 H 1.08997 * 109.88235 * 100.03061 * 11 9 8 39 39 H 0.97004 * 119.99472 * 179.97438 * 16 15 13 40 40 H 1.08994 * 110.36569 * 265.29352 * 21 12 11 41 41 H 1.09001 * 110.36466 * 142.96601 * 21 12 11 42 42 H 0.96697 * 113.99708 * 292.19839 * 24 22 21 43 43 H 0.96696 * 114.00495 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1337 1.1722 0.0000 4 6 3.5168 1.1556 -0.0005 5 6 4.2847 2.4126 -0.0011 6 8 5.4958 2.3853 -0.1096 7 7 3.6453 3.5930 0.1187 8 6 4.4145 4.8352 0.2262 9 6 3.4547 6.0203 0.3499 10 1 2.7309 5.8502 1.1469 11 6 2.7382 6.2849 -0.9910 12 7 2.6539 7.7429 -1.1606 13 6 2.1044 8.3909 -2.2346 14 1 1.9133 7.8519 -3.1506 15 6 1.7927 9.7408 -2.1455 16 7 2.0617 10.4069 -1.0427 17 14 0.9916 10.6116 -3.5910 18 1 -0.4819 10.6224 -3.4075 19 1 1.4913 12.0080 -3.6661 20 1 1.3288 9.8969 -4.8482 21 6 3.2579 8.3916 0.0174 22 6 4.2377 7.3379 0.5914 23 1 5.1793 7.3390 0.0424 24 8 4.4611 7.5526 1.9865 25 6 4.1804 -0.1008 -0.0066 26 8 5.5292 -0.1596 -0.0125 27 7 3.4637 -1.2119 -0.0012 28 6 2.1312 -1.1679 -0.0007 29 8 1.5017 -2.2117 -0.0011 30 1 -0.3634 0.0000 -1.0278 31 1 -0.3634 -0.8901 0.5137 32 1 -0.3633 0.8899 0.5138 33 1 1.5969 2.1093 0.0009 34 1 2.6757 3.6201 0.1336 35 1 5.0312 4.9589 -0.6640 36 1 5.0539 4.7914 1.1080 37 1 3.3108 5.8490 -1.8097 38 1 1.7365 5.8559 -0.9670 39 1 1.8443 11.3502 -0.9807 40 1 2.4901 8.6353 0.7516 41 1 3.7987 9.2900 -0.2800 42 1 4.9470 8.3643 2.1866 43 1 5.8838 -1.0592 -0.0167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958666445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:07 Heat of formation + Delta-G solvation = -113.313409 kcal Electronic energy + Delta-G solvation = -29210.535381 eV Core-core repulsion = 24870.597524 eV Total energy + Delta-G solvation = -4339.937856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.07387 -40.84647 -39.92144 -39.38837 -38.06246 -36.58613 -36.02993 -35.78958 -34.10282 -32.86042 -31.10905 -29.21956 -28.61220 -27.24840 -26.19613 -25.51170 -24.28180 -22.46231 -21.79582 -21.24976 -20.94803 -19.39645 -19.23421 -18.73880 -18.19899 -17.86057 -17.37799 -16.94665 -16.91937 -16.39128 -16.23787 -15.77634 -15.68386 -15.58008 -15.32512 -14.86600 -14.67671 -14.58407 -14.45459 -14.23108 -13.99216 -13.54065 -13.49275 -13.23848 -13.04722 -12.75743 -12.61761 -12.32596 -12.28009 -12.23486 -11.88379 -11.80828 -11.47357 -11.30515 -11.29191 -10.94557 -10.74875 -10.64983 -10.16304 -9.79507 -8.80240 -7.86870 -5.24883 -0.55953 0.02161 1.20745 1.49717 1.50095 1.59138 1.89366 1.98975 2.14304 2.49971 2.58331 2.97061 3.24297 3.30726 3.33062 3.55464 3.72564 3.79832 3.98460 4.02732 4.10059 4.18957 4.20587 4.42432 4.50989 4.53826 4.68610 4.79192 4.84711 4.89606 4.98999 5.05392 5.07546 5.32367 5.41537 5.47387 5.55851 5.73071 6.13461 6.22698 6.45694 6.55172 6.87624 6.92347 7.09935 7.22605 7.76941 8.42710 9.23854 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.002567 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.955333 B =10902.986811 C =12019.602415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.509 5.509 3 C 0.280 3.720 4 C -0.317 4.317 5 C 0.584 3.416 6 O -0.560 6.560 7 N -0.710 5.710 8 C 0.149 3.851 9 C -0.086 4.086 10 H 0.100 0.900 11 C 0.137 3.863 12 N -0.624 5.624 13 C -0.242 4.242 14 H 0.083 0.917 15 C -0.060 4.060 16 N -0.947 5.947 17 Si 0.974 3.026 18 H -0.287 1.287 19 H -0.298 1.298 20 H -0.268 1.268 21 C 0.156 3.844 22 C 0.093 3.907 23 H 0.068 0.932 24 O -0.568 6.568 25 C 0.493 3.507 26 O -0.422 6.422 27 N -0.645 5.645 28 C 0.647 3.353 29 O -0.571 6.571 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.243 0.757 34 H 0.413 0.587 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.044 0.956 39 H 0.248 0.752 40 H 0.003 0.997 41 H 0.037 0.963 42 H 0.393 0.607 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 -16.252 4.781 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.220 5.220 3 C 0.138 3.862 4 C -0.329 4.329 5 C 0.370 3.630 6 O -0.438 6.438 7 N -0.364 5.364 8 C 0.025 3.975 9 C -0.105 4.105 10 H 0.118 0.882 11 C 0.013 3.987 12 N -0.351 5.351 13 C -0.371 4.371 14 H 0.101 0.899 15 C -0.254 4.254 16 N -0.595 5.595 17 Si 0.802 3.198 18 H -0.213 1.213 19 H -0.225 1.225 20 H -0.192 1.192 21 C 0.030 3.970 22 C 0.032 3.968 23 H 0.086 0.914 24 O -0.375 6.375 25 C 0.293 3.707 26 O -0.216 6.216 27 N -0.405 5.405 28 C 0.349 3.651 29 O -0.448 6.448 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.157 0.843 33 H 0.259 0.741 34 H 0.250 0.750 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.242 0.758 43 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -0.649 -17.613 4.713 18.245 hybrid contribution -0.532 1.437 -0.746 1.704 sum -1.181 -16.176 3.967 16.698 Atomic orbital electron populations 1.22755 0.72708 1.07484 1.06378 1.46270 1.12624 1.06376 1.56719 1.23571 0.90722 0.92379 0.79543 1.19580 0.93053 0.92704 1.27585 1.17361 0.86683 0.82740 0.76198 1.90855 1.15052 1.87214 1.50701 1.45636 1.10911 1.05113 1.74706 1.21146 0.93217 0.81114 1.01990 1.22239 0.97470 0.92669 0.98141 0.88173 1.21609 0.98108 0.84626 0.94392 1.44540 1.69237 1.01485 1.19869 1.19389 1.33095 0.92943 0.91645 0.89940 1.25708 1.01695 0.98144 0.99822 1.70115 1.53082 1.08412 1.27865 0.85131 0.78076 0.77398 0.79147 1.21347 1.22469 1.19217 1.21807 0.93066 0.94105 0.88002 1.23014 0.96938 0.95053 0.81783 0.91437 1.86348 1.80158 1.47948 1.23053 1.20353 0.85021 0.88306 0.76996 1.85266 1.14014 1.37872 1.84426 1.69612 1.06072 1.28401 1.36427 1.17553 0.84825 0.83717 0.79043 1.90964 1.66701 1.31805 1.55335 0.88264 0.89462 0.84253 0.74140 0.74969 0.91949 0.91042 0.94707 0.93755 0.94315 0.97914 0.94419 0.75754 0.71348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.24 10.35 127.77 1.32 1.57 16 2 N -0.51 -6.46 2.96 -679.96 -2.01 -8.47 16 3 C 0.28 2.33 9.90 84.23 0.83 3.16 16 4 C -0.32 -5.30 5.90 -19.92 -0.12 -5.41 16 5 C 0.58 12.45 7.75 86.63 0.67 13.12 16 6 O -0.56 -17.11 15.32 16.13 0.25 -16.86 16 7 N -0.71 -12.09 5.42 -466.49 -2.53 -14.62 16 8 C 0.15 3.45 5.02 86.38 0.43 3.88 16 9 C -0.09 -2.32 2.70 -9.61 -0.03 -2.35 16 10 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 11 C 0.14 4.52 6.75 86.73 0.59 5.11 16 12 N -0.62 -28.70 3.39 -692.00 -2.35 -31.05 16 13 C -0.24 -12.46 10.23 84.04 0.86 -11.60 16 14 H 0.08 4.04 7.83 -2.92 -0.02 4.02 16 15 C -0.06 -3.20 5.48 84.87 0.46 -2.73 16 16 N -0.95 -53.67 10.57 21.65 0.23 -53.44 16 17 Si 0.97 42.97 29.55 68.60 2.03 45.00 16 18 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 C 0.16 6.96 5.15 86.86 0.45 7.41 16 22 C 0.09 3.03 3.88 31.99 0.12 3.15 16 23 H 0.07 2.14 8.05 -2.39 -0.02 2.12 16 24 O -0.57 -16.64 13.47 -148.98 -2.01 -18.65 16 25 C 0.49 10.27 7.93 85.59 0.68 10.95 16 26 O -0.42 -8.39 11.78 -62.55 -0.74 -9.13 16 27 N -0.64 -15.65 10.38 -438.21 -4.55 -20.20 16 28 C 0.65 15.42 8.32 179.61 1.49 16.92 16 29 O -0.57 -17.76 16.67 -4.99 -0.08 -17.84 16 30 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.09 0.82 7.36 -2.39 -0.02 0.80 16 32 H 0.14 -0.48 8.02 -2.39 -0.02 -0.49 16 33 H 0.24 -0.70 6.48 -2.91 -0.02 -0.72 16 34 H 0.41 3.84 6.58 -92.70 -0.61 3.23 16 35 H 0.06 1.63 7.93 -2.39 -0.02 1.61 16 36 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.03 1.13 7.68 -2.39 -0.02 1.11 16 38 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.25 13.74 8.31 -92.70 -0.77 12.97 16 40 H 0.00 0.14 8.06 -2.39 -0.02 0.12 16 41 H 0.04 1.92 6.92 -2.39 -0.02 1.90 16 42 H 0.39 8.82 9.12 -74.06 -0.68 8.14 16 43 H 0.43 4.69 8.98 -74.06 -0.67 4.03 16 Total: -1.00 -87.46 364.08 -4.84 -92.31 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -0.85 Total: 9.78 kcal Atomic # 6 Polarization: 35.40 SS G_CDS: 7.77 Total: 43.17 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -11.21 Total: -127.78 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: -2.58 Total: -62.48 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -87.46 -4.84 -92.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958666445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.008 kcal (2) G-P(sol) polarization free energy of solvation -87.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds