Wall clock time and date at job start Sat Apr 11 2020 05:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34953 * 119.70842 * 2 1 4 4 C 1.38327 * 119.02200 * 180.21987 * 3 2 1 5 5 C 1.47300 * 120.73661 * 179.77203 * 4 3 2 6 6 O 1.21623 * 119.99838 * 185.67305 * 5 4 3 7 7 N 1.34774 * 120.00067 * 5.67425 * 5 4 3 8 8 C 1.46505 * 120.00075 * 176.44456 * 7 5 4 9 9 C 1.52999 * 109.47044 * 179.97438 * 8 7 5 10 10 H 1.09003 * 110.77788 * 51.76699 * 9 8 7 11 11 C 1.54333 * 110.85203 * 288.69475 * 9 8 7 12 12 N 1.47022 * 107.26513 * 219.67400 * 11 9 8 13 13 C 1.36939 * 125.64967 * 178.84611 * 12 11 9 14 14 H 1.08000 * 119.99917 * 347.13757 * 13 12 11 15 15 C 1.38815 * 119.99693 * 167.13501 * 13 12 11 16 16 N 1.31618 * 120.00201 * 325.87993 * 15 13 12 17 17 Si 1.86799 * 119.99563 * 145.88274 * 15 13 12 18 18 H 1.48496 * 109.47469 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47536 * 119.99987 * 17 15 13 20 20 H 1.48498 * 109.46872 * 239.99766 * 17 15 13 21 21 C 1.47427 * 108.70071 * 358.58643 * 12 11 9 22 22 C 1.54905 * 104.83685 * 24.35638 * 21 12 11 23 23 H 1.08996 * 111.00472 * 204.91696 * 22 21 12 24 24 O 1.42897 * 111.00456 * 81.10037 * 22 21 12 25 25 C 1.42097 * 118.52222 * 359.50241 * 4 3 2 26 26 O 1.35012 * 120.33077 * 180.22258 * 25 4 3 27 27 N 1.32214 * 119.33839 * 0.25014 * 25 4 3 28 28 C 1.33329 * 120.93035 * 359.97438 * 27 25 4 29 29 O 1.21905 * 119.20009 * 180.02562 * 28 27 25 30 30 H 1.08990 * 109.47368 * 180.28006 * 1 2 3 31 31 H 1.09001 * 109.47491 * 300.28653 * 1 2 3 32 32 H 1.09005 * 109.46696 * 60.28052 * 1 2 3 33 33 H 1.08001 * 120.49072 * 359.97438 * 3 2 1 34 34 H 0.97002 * 120.00058 * 356.43979 * 7 5 4 35 35 H 1.09004 * 109.46697 * 60.00112 * 8 7 5 36 36 H 1.09000 * 109.46659 * 300.00284 * 8 7 5 37 37 H 1.08992 * 109.99472 * 100.20022 * 11 9 8 38 38 H 1.09003 * 109.77814 * 339.02705 * 11 9 8 39 39 H 0.96994 * 120.00043 * 354.47026 * 16 15 13 40 40 H 1.09002 * 110.36556 * 143.19668 * 21 12 11 41 41 H 1.09003 * 110.36730 * 265.40616 * 21 12 11 42 42 H 0.96700 * 113.99872 * 61.46270 * 24 22 21 43 43 H 0.96702 * 114.00400 * 179.97438 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1337 1.1721 0.0000 4 6 3.5169 1.1556 -0.0046 5 6 4.2848 2.4125 -0.0098 6 8 5.4959 2.3848 -0.1180 7 7 3.6454 3.5934 0.1053 8 6 4.4140 4.8385 0.1785 9 6 3.4544 6.0235 0.3040 10 1 2.7474 5.8640 1.1181 11 6 2.7052 6.2666 -1.0232 12 7 2.6191 7.7217 -1.2155 13 6 2.0466 8.3526 -2.2876 14 1 1.7962 7.7898 -3.1747 15 6 1.7881 9.7154 -2.2340 16 7 1.4391 10.2748 -1.0949 17 14 1.9355 10.7553 -3.7788 18 1 2.3400 9.8939 -4.9187 19 1 0.6255 11.3882 -4.0764 20 1 2.9588 11.8108 -3.5690 21 6 3.2457 8.3891 -0.0599 22 6 4.2393 7.3460 0.5098 23 1 4.4309 7.5261 1.5675 24 8 5.4587 7.3400 -0.2352 25 6 4.1804 -0.1009 0.0016 26 8 5.5293 -0.1597 0.0019 27 7 3.4638 -1.2120 0.0066 28 6 2.1312 -1.1679 0.0063 29 8 1.5016 -2.2118 0.0114 30 1 -0.3633 -1.0275 0.0050 31 1 -0.3634 0.5183 0.8874 32 1 -0.3633 0.5095 -0.8926 33 1 1.5970 2.1093 -0.0004 34 1 2.6764 3.6189 0.1396 35 1 5.0121 4.9499 -0.7260 36 1 5.0713 4.8091 1.0475 37 1 1.7037 5.8400 -0.9694 38 1 3.2586 5.8159 -1.8471 39 1 1.2843 9.7241 -0.3115 40 1 3.7783 9.2840 -0.3816 41 1 2.4923 8.6442 0.6853 42 1 5.9357 8.1809 -0.2155 43 1 5.8839 -1.0593 0.0068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958666446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:10 Heat of formation + Delta-G solvation = -113.947170 kcal Electronic energy + Delta-G solvation = -29376.329566 eV Core-core repulsion = 25036.364228 eV Total energy + Delta-G solvation = -4339.965338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.10271 -40.90316 -40.06644 -39.48373 -38.08583 -36.46669 -36.13125 -35.81836 -34.15696 -32.87661 -31.05937 -29.56033 -28.64652 -27.06844 -26.20868 -25.56153 -24.34326 -22.47714 -21.82854 -21.23643 -20.98203 -19.63951 -19.41749 -19.11532 -18.19190 -17.86911 -17.40425 -16.97359 -16.43601 -16.35724 -16.25921 -15.94094 -15.75384 -15.60155 -15.49905 -15.09004 -14.89981 -14.77827 -14.54578 -14.42095 -13.99024 -13.81060 -13.57696 -13.13254 -12.71348 -12.60603 -12.51702 -12.31677 -12.25973 -12.13060 -11.89800 -11.78476 -11.65038 -11.38349 -11.32698 -10.93196 -10.84385 -10.42820 -10.18190 -9.81706 -8.96253 -8.35816 -5.23587 -0.59489 -0.00698 1.18124 1.59408 1.64417 1.82522 1.87549 1.96187 2.11871 2.55331 2.63702 2.93044 3.13437 3.25182 3.27540 3.52015 3.53112 3.82843 3.84455 3.94214 3.99826 4.09266 4.16876 4.38410 4.42339 4.47013 4.62881 4.77675 4.78391 4.82309 4.93994 4.97624 5.04156 5.07919 5.15914 5.30330 5.42964 5.70952 6.10970 6.33928 6.42890 6.52207 6.84872 6.86547 6.95016 7.20665 7.73346 8.32229 8.98901 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.002565 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.825340 B =10913.464054 C =11925.177026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.509 5.509 3 C 0.281 3.719 4 C -0.316 4.316 5 C 0.582 3.418 6 O -0.560 6.560 7 N -0.713 5.713 8 C 0.158 3.842 9 C -0.090 4.090 10 H 0.123 0.877 11 C 0.140 3.860 12 N -0.620 5.620 13 C -0.347 4.347 14 H 0.055 0.945 15 C -0.070 4.070 16 N -0.935 5.935 17 Si 1.105 2.895 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.117 3.883 22 C 0.104 3.896 23 H 0.098 0.902 24 O -0.567 6.567 25 C 0.493 3.507 26 O -0.422 6.422 27 N -0.644 5.644 28 C 0.647 3.353 29 O -0.570 6.570 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.241 0.759 34 H 0.412 0.588 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.017 0.983 39 H 0.257 0.743 40 H 0.022 0.978 41 H 0.019 0.981 42 H 0.389 0.611 43 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 -15.885 7.350 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.220 5.220 3 C 0.138 3.862 4 C -0.329 4.329 5 C 0.369 3.631 6 O -0.438 6.438 7 N -0.366 5.366 8 C 0.035 3.965 9 C -0.109 4.109 10 H 0.141 0.859 11 C 0.016 3.984 12 N -0.347 5.347 13 C -0.475 4.475 14 H 0.072 0.928 15 C -0.268 4.268 16 N -0.577 5.577 17 Si 0.931 3.069 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.216 1.216 21 C -0.008 4.008 22 C 0.043 3.957 23 H 0.116 0.884 24 O -0.375 6.375 25 C 0.293 3.707 26 O -0.216 6.216 27 N -0.404 5.404 28 C 0.349 3.651 29 O -0.448 6.448 30 H 0.109 0.891 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.257 0.743 34 H 0.249 0.751 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.035 0.965 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.239 0.761 43 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 0.596 -15.920 6.474 17.197 hybrid contribution -0.355 -0.734 0.465 0.938 sum 0.242 -16.654 6.939 18.043 Atomic orbital electron populations 1.22789 0.72771 1.07029 1.07290 1.46241 1.12640 1.06354 1.56768 1.23490 0.90656 0.92404 0.79629 1.19583 0.93043 0.92717 1.27537 1.17382 0.86694 0.82803 0.76252 1.90860 1.15104 1.87232 1.50647 1.45707 1.10917 1.05126 1.74842 1.20889 0.92970 0.80568 1.02112 1.22494 0.96804 0.92981 0.98613 0.85864 1.21503 0.97132 0.84685 0.95107 1.44672 1.66434 1.01654 1.21942 1.19877 1.40225 0.94598 0.92802 0.92755 1.26757 0.98299 0.96518 1.05186 1.70864 1.43955 1.39665 1.03231 0.83000 0.76554 0.74635 0.72712 1.20463 1.21828 1.21565 1.22219 0.94040 0.95075 0.89515 1.22956 0.83773 0.94201 0.94745 0.88411 1.86408 1.35429 1.40033 1.75584 1.20351 0.85029 0.88295 0.76981 1.85272 1.14011 1.37894 1.84404 1.69617 1.06055 1.28346 1.36400 1.17557 0.84844 0.83769 0.78937 1.90957 1.66597 1.31761 1.55469 0.89121 0.85918 0.86430 0.74301 0.75079 0.93005 0.90696 0.94676 0.96519 0.93249 0.95924 0.96290 0.76121 0.71319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 127.77 1.35 1.57 16 2 N -0.51 -6.58 2.96 -679.95 -2.01 -8.60 16 3 C 0.28 2.45 9.96 84.23 0.84 3.29 16 4 C -0.32 -5.43 5.90 -19.92 -0.12 -5.55 16 5 C 0.58 12.86 7.75 86.63 0.67 13.53 16 6 O -0.56 -17.76 15.32 16.12 0.25 -17.51 16 7 N -0.71 -12.46 5.42 -466.48 -2.53 -14.99 16 8 C 0.16 3.76 4.50 86.38 0.39 4.15 16 9 C -0.09 -2.27 2.88 -9.60 -0.03 -2.29 16 10 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 11 C 0.14 4.89 6.76 86.73 0.59 5.47 16 12 N -0.62 -28.78 3.32 -691.97 -2.30 -31.08 16 13 C -0.35 -18.74 9.96 84.03 0.84 -17.90 16 14 H 0.05 2.99 8.02 -2.91 -0.02 2.96 16 15 C -0.07 -3.86 4.95 84.86 0.42 -3.44 16 16 N -0.93 -54.17 12.90 21.65 0.28 -53.89 16 17 Si 1.11 49.81 30.03 68.60 2.06 51.87 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 C 0.12 4.83 5.08 86.85 0.44 5.27 16 22 C 0.10 3.03 4.17 31.99 0.13 3.16 16 23 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 24 O -0.57 -17.32 12.34 -148.98 -1.84 -19.16 16 25 C 0.49 10.44 7.93 85.59 0.68 11.12 16 26 O -0.42 -8.56 11.79 -62.62 -0.74 -9.30 16 27 N -0.64 -15.75 10.38 -438.19 -4.55 -20.30 16 28 C 0.65 15.52 8.32 179.60 1.49 17.01 16 29 O -0.57 -17.75 16.42 -5.01 -0.08 -17.83 16 30 H 0.09 0.97 6.82 -2.39 -0.02 0.95 16 31 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 33 H 0.24 -0.55 6.49 -2.91 -0.02 -0.57 16 34 H 0.41 3.90 6.58 -92.71 -0.61 3.29 16 35 H 0.05 1.61 7.53 -2.38 -0.02 1.59 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.02 0.64 7.69 -2.39 -0.02 0.62 16 39 H 0.26 14.91 6.47 -92.71 -0.60 14.31 16 40 H 0.02 1.06 7.86 -2.39 -0.02 1.04 16 41 H 0.02 0.84 7.02 -2.39 -0.02 0.82 16 42 H 0.39 9.51 9.11 -74.06 -0.67 8.83 16 43 H 0.43 4.82 8.98 -74.06 -0.67 4.15 16 Total: -1.00 -91.19 362.35 -4.44 -95.63 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -0.68 Total: 9.76 kcal Atomic # 6 Polarization: 27.70 SS G_CDS: 7.70 Total: 35.40 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -11.11 Total: -128.85 kcal Atomic # 8 Polarization: -61.39 SS G_CDS: -2.41 Total: -63.80 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.06 Total: 51.87 kcal Total: -91.19 -4.44 -95.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958666446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.319 kcal (2) G-P(sol) polarization free energy of solvation -91.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds