Wall clock time and date at job start Sat Apr 11 2020 05:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34947 * 119.70786 * 2 1 4 4 C 1.38319 * 119.02442 * 180.02562 * 3 2 1 5 5 C 1.47300 * 120.73902 * 179.97438 * 4 3 2 6 6 O 1.21619 * 120.00045 * 185.29893 * 5 4 3 7 7 N 1.34781 * 120.00095 * 5.29346 * 5 4 3 8 8 C 1.46501 * 120.00183 * 174.90078 * 7 5 4 9 9 C 1.52994 * 109.47190 * 179.97438 * 8 7 5 10 10 H 1.09009 * 110.64252 * 303.31398 * 9 8 7 11 11 C 1.54328 * 110.72043 * 66.45372 * 9 8 7 12 12 N 1.47014 * 107.40255 * 140.47568 * 11 9 8 13 13 C 1.36938 * 125.65178 * 181.10108 * 12 11 9 14 14 H 1.08002 * 119.99360 * 0.02562 * 13 12 11 15 15 C 1.38806 * 120.00584 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00043 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00380 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47168 * 59.99999 * 17 15 13 19 19 H 1.48500 * 109.47596 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47220 * 300.00418 * 17 15 13 21 21 C 1.47747 * 108.52966 * 1.18566 * 12 11 9 22 22 C 1.54909 * 104.84046 * 335.74566 * 21 12 11 23 23 H 1.08988 * 111.03953 * 279.00685 * 22 21 12 24 24 O 1.42904 * 111.00292 * 155.16908 * 22 21 12 25 25 C 1.42096 * 118.52550 * 0.24158 * 4 3 2 26 26 O 1.35012 * 120.33545 * 179.72624 * 25 4 3 27 27 N 1.32222 * 119.32998 * 359.51459 * 25 4 3 28 28 C 1.33325 * 120.93174 * 0.49916 * 27 25 4 29 29 O 1.21909 * 119.19650 * 179.74756 * 28 27 25 30 30 H 1.09004 * 109.46545 * 90.00263 * 1 2 3 31 31 H 1.08993 * 109.47115 * 210.00181 * 1 2 3 32 32 H 1.09002 * 109.47035 * 330.00854 * 1 2 3 33 33 H 1.08001 * 120.48380 * 0.02562 * 3 2 1 34 34 H 0.96995 * 119.99624 * 354.90036 * 7 5 4 35 35 H 1.09003 * 109.46849 * 59.99848 * 8 7 5 36 36 H 1.09000 * 109.47031 * 300.00189 * 8 7 5 37 37 H 1.09001 * 109.88361 * 259.97749 * 11 9 8 38 38 H 1.09002 * 109.88059 * 20.98310 * 11 9 8 39 39 H 0.96996 * 120.00601 * 180.02562 * 16 15 13 40 40 H 1.09000 * 110.29169 * 216.93976 * 21 12 11 41 41 H 1.08998 * 110.52788 * 94.67670 * 21 12 11 42 42 H 0.96695 * 113.99790 * 67.80351 * 24 22 21 43 43 H 0.96700 * 114.00092 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1338 1.1721 0.0000 4 6 3.5169 1.1556 -0.0005 5 6 4.2848 2.4126 -0.0011 6 8 5.4968 2.3847 -0.0989 7 7 3.6444 3.5936 0.1065 8 6 4.4127 4.8360 0.2185 9 6 3.4520 6.0218 0.3262 10 1 2.7742 6.0460 -0.5272 11 6 2.6610 5.9652 1.6502 12 7 2.5561 7.3405 2.1589 13 6 1.9448 7.7156 3.3254 14 1 1.4867 6.9703 3.9588 15 6 1.9138 9.0535 3.6938 16 7 2.4716 9.9618 2.9217 17 14 1.0805 9.5650 5.2854 18 1 1.7455 8.8929 6.4306 19 1 1.1847 11.0374 5.4479 20 1 -0.3507 9.1711 5.2437 21 6 3.2188 8.2478 1.1994 22 6 4.2367 7.3548 0.4470 23 1 5.1467 7.2209 1.0316 24 8 4.5344 7.8926 -0.8431 25 6 4.1805 -0.1008 -0.0063 26 8 5.5294 -0.1596 -0.0126 27 7 3.4638 -1.2119 -0.0013 28 6 2.1313 -1.1679 -0.0008 29 8 1.5017 -2.2118 -0.0007 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5137 33 1 1.5969 2.1092 0.0004 34 1 2.6749 3.6210 0.1099 35 1 5.0400 4.9561 -0.6649 36 1 5.0416 4.7954 1.1078 37 1 1.6655 5.5594 1.4702 38 1 3.1900 5.3424 2.3717 39 1 2.4503 10.8967 3.1793 40 1 3.7354 9.0475 1.7303 41 1 2.4916 8.6643 0.5025 42 1 5.0242 8.7260 -0.8183 43 1 5.8839 -1.0592 -0.0166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958666448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:17 Heat of formation + Delta-G solvation = -74.930234 kcal Electronic energy + Delta-G solvation = -29270.746712 eV Core-core repulsion = 24932.473275 eV Total energy + Delta-G solvation = -4338.273437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.31146 -39.88278 -38.93406 -38.16878 -37.18319 -35.25765 -35.05087 -34.73532 -32.63962 -31.75397 -29.66168 -28.12847 -27.61588 -25.77604 -25.46288 -24.28826 -23.19078 -21.26748 -20.39254 -20.16470 -19.95144 -18.65725 -18.31264 -17.12498 -17.09971 -16.88405 -16.46364 -16.01930 -15.54096 -15.35473 -15.11684 -14.91453 -14.80456 -14.23295 -14.09485 -13.94434 -13.71485 -13.57910 -13.14543 -13.10093 -12.94501 -12.49280 -12.06421 -12.02329 -11.63241 -11.35259 -11.32890 -11.06216 -10.87645 -10.74604 -10.51076 -10.49273 -10.16756 -10.12406 -9.92878 -9.75401 -9.25975 -9.20899 -8.97378 -8.79433 -7.00723 -5.80138 -3.22980 0.05831 0.86002 1.83803 2.73330 2.81202 2.94674 3.31502 3.36188 3.37485 3.40336 3.61256 3.83843 4.25919 4.34087 4.51507 4.61209 4.67762 4.70496 4.80418 4.96498 5.08190 5.13446 5.35269 5.39798 5.41555 5.57226 5.74559 5.85120 5.93823 5.96689 6.09472 6.25908 6.31252 6.46517 6.69268 6.76644 7.25867 7.26534 7.36051 7.44482 7.65578 7.68294 8.07241 8.08537 8.19971 9.05178 9.66602 10.29440 11.24089 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.002668 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.164795 B =10493.387846 C =11754.725003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.518 5.518 3 C 0.244 3.756 4 C -0.294 4.294 5 C 0.577 3.423 6 O -0.514 6.514 7 N -0.725 5.725 8 C 0.136 3.864 9 C -0.106 4.106 10 H 0.086 0.914 11 C 0.141 3.859 12 N -0.601 5.601 13 C -0.228 4.228 14 H 0.079 0.921 15 C -0.008 4.008 16 N -0.922 5.922 17 Si 0.917 3.083 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.285 1.285 21 C 0.128 3.872 22 C 0.082 3.918 23 H 0.062 0.938 24 O -0.569 6.569 25 C 0.496 3.504 26 O -0.411 6.411 27 N -0.616 5.616 28 C 0.654 3.346 29 O -0.526 6.526 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.189 0.811 34 H 0.394 0.606 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.022 0.978 38 H 0.029 0.971 39 H 0.254 0.746 40 H 0.109 0.891 41 H 0.023 0.977 42 H 0.378 0.622 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.335 -14.300 -7.976 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.231 5.231 3 C 0.103 3.897 4 C -0.307 4.307 5 C 0.362 3.638 6 O -0.390 6.390 7 N -0.377 5.377 8 C 0.013 3.987 9 C -0.125 4.125 10 H 0.105 0.895 11 C 0.014 3.986 12 N -0.328 5.328 13 C -0.356 4.356 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.570 5.570 17 Si 0.747 3.253 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.211 1.211 21 C 0.002 3.998 22 C 0.021 3.979 23 H 0.080 0.920 24 O -0.374 6.374 25 C 0.293 3.707 26 O -0.202 6.202 27 N -0.375 5.375 28 C 0.356 3.644 29 O -0.400 6.400 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.206 0.794 34 H 0.229 0.771 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.041 0.959 42 H 0.225 0.775 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 0.006 -15.637 -8.090 17.606 hybrid contribution -0.952 1.031 1.002 1.724 sum -0.945 -14.606 -7.088 16.263 Atomic orbital electron populations 1.22389 0.75227 1.06131 1.04922 1.46283 1.11158 1.07098 1.58540 1.22912 0.91829 0.91441 0.83561 1.19774 0.91769 0.94332 1.24840 1.17211 0.87197 0.82132 0.77290 1.90868 1.12903 1.86615 1.48601 1.45892 1.10097 1.06366 1.75330 1.21461 0.93814 0.80925 1.02523 1.22422 0.97350 0.93106 0.99639 0.89521 1.21368 0.96156 0.89446 0.91587 1.44363 1.65898 1.00314 1.22205 1.19018 1.28612 0.92149 0.95795 0.90327 1.24801 1.00979 0.95643 0.99005 1.69741 1.48954 1.00811 1.37511 0.86127 0.79093 0.77468 0.82635 1.21041 1.21489 1.21134 1.22590 0.92907 0.93349 0.90926 1.23295 0.97585 0.93362 0.83630 0.92034 1.86364 1.79107 1.42809 1.29120 1.20195 0.84940 0.88062 0.77456 1.85284 1.13990 1.36299 1.84641 1.69739 1.05474 1.27240 1.34999 1.17455 0.84746 0.82986 0.79200 1.91002 1.65928 1.29962 1.53103 0.89608 0.87894 0.88609 0.79389 0.77134 0.90783 0.91002 0.96009 0.95269 0.93491 0.87372 0.95918 0.77535 0.73068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 10.35 59.85 0.62 0.87 16 2 N -0.52 -4.12 2.96 -128.87 -0.38 -4.50 16 3 C 0.24 1.57 9.90 -16.15 -0.16 1.41 16 4 C -0.29 -2.87 5.90 -104.70 -0.62 -3.49 16 5 C 0.58 6.95 7.75 -12.57 -0.10 6.86 16 6 O -0.51 -8.22 15.32 -15.91 -0.24 -8.46 16 7 N -0.72 -7.65 5.35 -61.42 -0.33 -7.98 16 8 C 0.14 1.80 5.00 -4.04 -0.02 1.78 16 9 C -0.11 -1.60 2.75 -88.79 -0.24 -1.85 16 10 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 11 C 0.14 2.50 6.52 -3.07 -0.02 2.48 16 12 N -0.60 -14.06 3.40 -169.82 -0.58 -14.63 16 13 C -0.23 -5.92 10.28 -15.06 -0.15 -6.07 16 14 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 15 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 16 N -0.92 -25.38 10.11 55.49 0.56 -24.82 16 17 Si 0.92 20.92 29.55 -169.99 -5.02 15.89 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.13 2.84 5.65 -2.35 -0.01 2.83 16 22 C 0.08 1.42 3.88 -24.58 -0.10 1.32 16 23 H 0.06 1.05 8.05 -51.94 -0.42 0.64 16 24 O -0.57 -9.00 13.47 -35.23 -0.47 -9.48 16 25 C 0.50 5.43 7.93 -15.91 -0.13 5.31 16 26 O -0.41 -4.16 11.78 -37.92 -0.45 -4.61 16 27 N -0.62 -7.64 10.38 -16.47 -0.17 -7.81 16 28 C 0.65 8.16 8.32 -88.50 -0.74 7.42 16 29 O -0.53 -8.19 16.67 5.00 0.08 -8.10 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.60 7.36 -51.93 -0.38 0.22 16 32 H 0.10 0.14 8.02 -51.93 -0.42 -0.27 16 33 H 0.19 0.40 6.48 -52.49 -0.34 0.06 16 34 H 0.39 2.96 6.43 -40.82 -0.26 2.70 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.03 8.06 -51.93 -0.42 0.62 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.03 0.52 7.76 -51.93 -0.40 0.12 16 39 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.11 2.72 5.89 -51.93 -0.31 2.41 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.38 4.61 9.12 45.56 0.42 5.02 16 43 H 0.41 2.25 8.98 45.56 0.41 2.66 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -38.11 363.01 -7.08 -45.18 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.78 Total: 5.31 kcal Atomic # 6 Polarization: 20.30 SS G_CDS: -1.76 Total: 18.54 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.90 Total: -59.74 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.08 Total: -30.66 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.11 -7.08 -45.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958666448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.746 kcal (2) G-P(sol) polarization free energy of solvation -38.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds