Wall clock time and date at job start Sat Apr 11 2020 05:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34947 * 119.70786 * 2 1 4 4 C 1.38319 * 119.02442 * 180.02562 * 3 2 1 5 5 C 1.47300 * 120.73902 * 179.97438 * 4 3 2 6 6 O 1.21619 * 120.00045 * 185.29893 * 5 4 3 7 7 N 1.34781 * 120.00095 * 5.29346 * 5 4 3 8 8 C 1.46501 * 120.00183 * 174.90078 * 7 5 4 9 9 C 1.52994 * 109.47190 * 179.97438 * 8 7 5 10 10 H 1.09009 * 110.64252 * 303.31398 * 9 8 7 11 11 C 1.54328 * 110.72043 * 66.45372 * 9 8 7 12 12 N 1.47014 * 107.40255 * 140.47568 * 11 9 8 13 13 C 1.36938 * 125.65178 * 181.10108 * 12 11 9 14 14 H 1.08002 * 119.99360 * 0.02562 * 13 12 11 15 15 C 1.38806 * 120.00584 * 180.02562 * 13 12 11 16 16 N 1.31616 * 120.00043 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00380 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47168 * 59.99999 * 17 15 13 19 19 H 1.48500 * 109.47596 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47220 * 300.00418 * 17 15 13 21 21 C 1.47747 * 108.52966 * 1.18566 * 12 11 9 22 22 C 1.54909 * 104.84046 * 335.74566 * 21 12 11 23 23 H 1.08988 * 111.03953 * 279.00685 * 22 21 12 24 24 O 1.42904 * 111.00292 * 155.16908 * 22 21 12 25 25 C 1.42096 * 118.52550 * 0.24158 * 4 3 2 26 26 O 1.35012 * 120.33545 * 179.72624 * 25 4 3 27 27 N 1.32222 * 119.32998 * 359.51459 * 25 4 3 28 28 C 1.33325 * 120.93174 * 0.49916 * 27 25 4 29 29 O 1.21909 * 119.19650 * 179.74756 * 28 27 25 30 30 H 1.09004 * 109.46545 * 90.00263 * 1 2 3 31 31 H 1.08993 * 109.47115 * 210.00181 * 1 2 3 32 32 H 1.09002 * 109.47035 * 330.00854 * 1 2 3 33 33 H 1.08001 * 120.48380 * 0.02562 * 3 2 1 34 34 H 0.96995 * 119.99624 * 354.90036 * 7 5 4 35 35 H 1.09003 * 109.46849 * 59.99848 * 8 7 5 36 36 H 1.09000 * 109.47031 * 300.00189 * 8 7 5 37 37 H 1.09001 * 109.88361 * 259.97749 * 11 9 8 38 38 H 1.09002 * 109.88059 * 20.98310 * 11 9 8 39 39 H 0.96996 * 120.00601 * 180.02562 * 16 15 13 40 40 H 1.09000 * 110.29169 * 216.93976 * 21 12 11 41 41 H 1.08998 * 110.52788 * 94.67670 * 21 12 11 42 42 H 0.96695 * 113.99790 * 67.80351 * 24 22 21 43 43 H 0.96700 * 114.00092 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1338 1.1721 0.0000 4 6 3.5169 1.1556 -0.0005 5 6 4.2848 2.4126 -0.0011 6 8 5.4968 2.3847 -0.0989 7 7 3.6444 3.5936 0.1065 8 6 4.4127 4.8360 0.2185 9 6 3.4520 6.0218 0.3262 10 1 2.7742 6.0460 -0.5272 11 6 2.6610 5.9652 1.6502 12 7 2.5561 7.3405 2.1589 13 6 1.9448 7.7156 3.3254 14 1 1.4867 6.9703 3.9588 15 6 1.9138 9.0535 3.6938 16 7 2.4716 9.9618 2.9217 17 14 1.0805 9.5650 5.2854 18 1 1.7455 8.8929 6.4306 19 1 1.1847 11.0374 5.4479 20 1 -0.3507 9.1711 5.2437 21 6 3.2188 8.2478 1.1994 22 6 4.2367 7.3548 0.4470 23 1 5.1467 7.2209 1.0316 24 8 4.5344 7.8926 -0.8431 25 6 4.1805 -0.1008 -0.0063 26 8 5.5294 -0.1596 -0.0126 27 7 3.4638 -1.2119 -0.0013 28 6 2.1313 -1.1679 -0.0008 29 8 1.5017 -2.2118 -0.0007 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5137 33 1 1.5969 2.1092 0.0004 34 1 2.6749 3.6210 0.1099 35 1 5.0400 4.9561 -0.6649 36 1 5.0416 4.7954 1.1078 37 1 1.6655 5.5594 1.4702 38 1 3.1900 5.3424 2.3717 39 1 2.4503 10.8967 3.1793 40 1 3.7354 9.0475 1.7303 41 1 2.4916 8.6643 0.5025 42 1 5.0242 8.7260 -0.8183 43 1 5.8839 -1.0592 -0.0166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958666448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:16 Heat of formation + Delta-G solvation = -110.508499 kcal Electronic energy + Delta-G solvation = -29272.289501 eV Core-core repulsion = 24932.473275 eV Total energy + Delta-G solvation = -4339.816226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.07660 -40.85355 -39.91543 -39.38100 -38.06419 -36.58540 -36.03905 -35.79237 -34.09085 -32.85250 -31.09680 -29.21025 -28.61297 -27.24396 -26.20067 -25.51895 -24.29234 -22.46497 -21.75904 -21.23193 -20.95139 -19.39578 -19.25920 -18.77490 -18.18192 -17.86239 -17.38004 -16.96019 -16.93034 -16.37493 -16.23065 -15.80338 -15.67251 -15.55604 -15.34761 -14.86690 -14.67392 -14.53855 -14.47885 -14.20759 -13.96898 -13.59544 -13.49963 -13.18500 -13.05213 -12.69645 -12.62358 -12.32823 -12.29871 -12.27055 -11.85461 -11.80259 -11.43970 -11.29914 -11.26705 -10.96654 -10.73213 -10.68010 -10.16877 -9.79925 -8.86460 -7.75953 -5.19911 -0.56349 0.01756 1.20440 1.50824 1.52541 1.58706 1.87673 1.99549 2.13881 2.51173 2.58100 2.96670 3.25005 3.30353 3.36065 3.54479 3.70791 3.81051 3.99135 4.02634 4.09704 4.18998 4.20713 4.42403 4.50222 4.53890 4.70051 4.78974 4.83608 4.88440 4.98783 5.05732 5.07168 5.32903 5.42281 5.48326 5.53850 5.79673 6.13103 6.29429 6.45285 6.54640 6.87302 6.92740 7.11467 7.21928 7.79352 8.41912 9.26013 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.002668 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.164795 B =10493.387846 C =11754.725003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.509 5.509 3 C 0.280 3.720 4 C -0.317 4.317 5 C 0.584 3.416 6 O -0.559 6.559 7 N -0.710 5.710 8 C 0.150 3.850 9 C -0.087 4.087 10 H 0.100 0.900 11 C 0.137 3.863 12 N -0.624 5.624 13 C -0.235 4.235 14 H 0.088 0.912 15 C -0.067 4.067 16 N -0.950 5.950 17 Si 0.977 3.023 18 H -0.278 1.278 19 H -0.298 1.298 20 H -0.277 1.277 21 C 0.132 3.868 22 C 0.094 3.906 23 H 0.065 0.935 24 O -0.569 6.569 25 C 0.493 3.507 26 O -0.422 6.422 27 N -0.645 5.645 28 C 0.647 3.353 29 O -0.570 6.570 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.243 0.757 34 H 0.412 0.588 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.246 0.754 40 H 0.074 0.926 41 H -0.006 1.006 42 H 0.393 0.607 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 -14.680 -8.231 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.220 5.220 3 C 0.138 3.862 4 C -0.329 4.329 5 C 0.370 3.630 6 O -0.438 6.438 7 N -0.364 5.364 8 C 0.025 3.975 9 C -0.106 4.106 10 H 0.118 0.882 11 C 0.012 3.988 12 N -0.352 5.352 13 C -0.364 4.364 14 H 0.105 0.895 15 C -0.259 4.259 16 N -0.600 5.600 17 Si 0.805 3.195 18 H -0.204 1.204 19 H -0.225 1.225 20 H -0.203 1.203 21 C 0.006 3.994 22 C 0.034 3.966 23 H 0.083 0.917 24 O -0.376 6.376 25 C 0.293 3.707 26 O -0.216 6.216 27 N -0.405 5.405 28 C 0.349 3.651 29 O -0.448 6.448 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.156 0.844 33 H 0.259 0.741 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.012 0.988 42 H 0.242 0.758 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -1.522 -16.028 -8.357 18.140 hybrid contribution -0.499 1.152 1.050 1.636 sum -2.021 -14.877 -7.307 16.697 Atomic orbital electron populations 1.22757 0.72690 1.07424 1.06453 1.46272 1.12633 1.06369 1.56709 1.23569 0.90717 0.92386 0.79536 1.19580 0.93065 0.92705 1.27596 1.17362 0.86694 0.82740 0.76180 1.90853 1.14971 1.87219 1.50753 1.45626 1.10889 1.05089 1.74759 1.21135 0.93249 0.81131 1.01936 1.22261 0.97100 0.92533 0.98749 0.88220 1.21590 0.97863 0.86705 0.92629 1.44643 1.65799 1.02825 1.21886 1.19433 1.27819 0.92402 0.96725 0.89460 1.25583 1.02371 0.96027 1.01950 1.69996 1.50511 1.00492 1.38953 0.85176 0.78474 0.76342 0.79482 1.20443 1.22485 1.20288 1.22344 0.92969 0.93675 0.90365 1.22999 0.96481 0.93401 0.83758 0.91749 1.86340 1.79342 1.43921 1.27981 1.20357 0.85023 0.88311 0.76998 1.85269 1.14016 1.37868 1.84428 1.69615 1.06078 1.28395 1.36424 1.17555 0.84823 0.83723 0.79044 1.90966 1.66701 1.31794 1.55332 0.87993 0.89566 0.84391 0.74133 0.74986 0.91094 0.92101 0.93489 0.94733 0.94412 0.90844 0.98826 0.75770 0.71350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.25 10.35 127.77 1.32 1.57 16 2 N -0.51 -6.56 2.96 -679.94 -2.01 -8.58 16 3 C 0.28 2.39 9.90 84.23 0.83 3.22 16 4 C -0.32 -5.38 5.90 -19.92 -0.12 -5.50 16 5 C 0.58 12.60 7.75 86.63 0.67 13.27 16 6 O -0.56 -17.23 15.32 16.16 0.25 -16.98 16 7 N -0.71 -12.28 5.35 -466.49 -2.50 -14.77 16 8 C 0.15 3.51 5.00 86.38 0.43 3.94 16 9 C -0.09 -2.37 2.75 -9.61 -0.03 -2.40 16 10 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 11 C 0.14 4.44 6.52 86.73 0.57 5.01 16 12 N -0.62 -28.54 3.40 -691.18 -2.35 -30.89 16 13 C -0.23 -12.00 10.28 84.03 0.86 -11.13 16 14 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 15 C -0.07 -3.54 5.49 84.86 0.47 -3.08 16 16 N -0.95 -53.41 10.11 21.65 0.22 -53.19 16 17 Si 0.98 42.88 29.55 68.60 2.03 44.91 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 21 C 0.13 5.90 5.65 86.79 0.49 6.39 16 22 C 0.09 3.13 3.88 31.99 0.12 3.26 16 23 H 0.06 2.12 8.05 -2.39 -0.02 2.10 16 24 O -0.57 -16.97 13.47 -148.98 -2.01 -18.98 16 25 C 0.49 10.41 7.93 85.59 0.68 11.09 16 26 O -0.42 -8.52 11.78 -62.59 -0.74 -9.26 16 27 N -0.64 -15.82 10.38 -438.19 -4.55 -20.37 16 28 C 0.65 15.57 8.32 179.61 1.49 17.06 16 29 O -0.57 -17.87 16.67 -5.02 -0.08 -17.95 16 30 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.09 0.84 7.36 -2.39 -0.02 0.83 16 32 H 0.14 -0.39 8.02 -2.39 -0.02 -0.41 16 33 H 0.24 -0.67 6.48 -2.91 -0.02 -0.69 16 34 H 0.41 3.93 6.43 -92.71 -0.60 3.33 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.61 8.06 -2.39 -0.02 1.59 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.03 1.11 7.76 -2.39 -0.02 1.09 16 39 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 40 H 0.07 3.80 5.89 -2.39 -0.01 3.79 16 41 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.39 9.07 9.12 -74.06 -0.68 8.39 16 43 H 0.43 4.82 8.98 -74.06 -0.67 4.15 16 Total: -1.00 -86.68 363.01 -4.78 -91.46 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -0.83 Total: 11.89 kcal Atomic # 6 Polarization: 34.92 SS G_CDS: 7.80 Total: 42.71 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -11.19 Total: -127.80 kcal Atomic # 8 Polarization: -60.59 SS G_CDS: -2.58 Total: -63.17 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -86.68 -4.78 -91.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958666448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.047 kcal (2) G-P(sol) polarization free energy of solvation -86.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds