Wall clock time and date at job start Sat Apr 11 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35793 * 117.00394 * 2 1 4 4 C 1.40341 * 120.90883 * 269.98273 * 3 2 1 5 5 O 1.35560 * 120.48346 * 0.03817 * 4 3 2 6 6 N 1.32396 * 119.02542 * 180.02562 * 4 3 2 7 7 C 1.32494 * 120.98247 * 0.02562 * 6 4 3 8 8 O 1.35539 * 118.99885 * 180.02562 * 7 6 4 9 9 N 1.31862 * 122.00424 * 359.70832 * 7 6 4 10 10 C 1.33527 * 120.87541 * 0.57874 * 9 7 6 11 11 C 1.48066 * 120.54082 * 179.70953 * 10 9 7 12 12 O 1.21524 * 119.99826 * 179.72667 * 11 10 9 13 13 N 1.34775 * 119.99597 * 359.72492 * 11 10 9 14 14 C 1.46506 * 119.99693 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.46660 * 35.00912 * 14 13 11 16 16 C 1.52997 * 109.47289 * 275.00198 * 14 13 11 17 17 C 1.52999 * 109.46684 * 155.00124 * 14 13 11 18 18 C 1.53945 * 113.74529 * 278.73866 * 17 14 13 19 19 N 1.47807 * 86.04084 * 222.08774 * 18 17 14 20 20 C 1.36936 * 134.45937 * 204.64279 * 19 18 17 21 21 H 1.08005 * 120.00346 * 179.86277 * 20 19 18 22 22 C 1.38811 * 119.99896 * 359.87268 * 20 19 18 23 23 N 1.31623 * 120.00001 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00199 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47031 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47325 * 119.99616 * 24 22 20 27 27 H 1.48504 * 109.47317 * 239.99651 * 24 22 20 28 28 C 1.47576 * 91.04962 * 24.54882 * 19 18 17 29 29 H 1.09002 * 109.46924 * 59.99653 * 1 2 3 30 30 H 1.08995 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47039 * 300.00112 * 1 2 3 32 32 H 0.96702 * 114.00154 * 90.00379 * 5 4 3 33 33 H 0.96700 * 113.99836 * 89.99414 * 8 7 6 34 34 H 0.97000 * 120.00190 * 359.97438 * 13 11 10 35 35 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 36 36 H 1.09001 * 109.46832 * 60.00146 * 16 14 13 37 37 H 1.09004 * 109.47261 * 300.00128 * 16 14 13 38 38 H 1.09002 * 112.94852 * 50.34103 * 17 14 13 39 39 H 1.08997 * 113.76654 * 336.35575 * 18 17 14 40 40 H 1.09002 * 113.76615 * 107.75050 * 18 17 14 41 41 H 0.96992 * 119.99763 * 180.02562 * 23 22 20 42 42 H 1.09006 * 113.77253 * 221.14869 * 28 19 18 43 43 H 1.09000 * 113.87108 * 89.76663 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 2.3732 1.8520 -1.2041 5 8 2.0781 1.2739 -2.3942 6 7 2.9745 3.0308 -1.1606 7 6 3.2676 3.6046 -0.0029 8 8 3.8830 4.8122 -0.0053 9 7 2.9734 3.0393 1.1515 10 6 2.3720 1.8481 1.1977 11 6 2.0508 1.2173 2.4982 12 8 1.4988 0.1350 2.5287 13 7 2.3707 1.8434 3.6480 14 6 2.0523 1.2195 4.9348 15 1 2.1623 0.1383 4.8514 16 6 0.6115 1.5573 5.3229 17 6 3.0067 1.7478 6.0076 18 6 4.3791 1.0503 6.0143 19 7 4.2601 1.0555 7.4875 20 6 5.1562 1.0188 8.5223 21 1 4.8036 1.0358 9.5430 22 6 6.5179 0.9599 8.2594 23 7 6.9477 0.9389 7.0155 24 14 7.7405 0.9105 9.6709 25 1 7.0075 0.9452 10.9620 26 1 8.5410 -0.3376 9.5890 27 1 8.6449 2.0852 9.5838 28 6 2.7885 1.1186 7.3956 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2056 1.5078 -2.7395 33 1 3.2745 5.5637 -0.0055 34 1 2.8116 2.7070 3.6236 35 1 0.3745 1.0928 6.2800 36 1 -0.0684 1.1809 4.5585 37 1 0.5016 2.6386 5.4063 38 1 3.0674 2.8360 6.0238 39 1 4.3668 0.0524 5.5760 40 1 5.1900 1.6726 5.6357 41 1 7.8992 0.8974 6.8318 42 1 2.3317 1.7953 8.1178 43 1 2.3062 0.1417 7.3641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970734653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:20 Heat of formation + Delta-G solvation = -25.196790 kcal Electronic energy + Delta-G solvation = -29616.355521 eV Core-core repulsion = 25280.238688 eV Total energy + Delta-G solvation = -4336.116833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.01696 -39.83147 -39.17030 -38.25669 -37.78096 -37.05309 -34.89204 -33.87433 -32.15974 -30.77984 -30.33343 -27.52289 -27.37464 -25.99257 -24.76339 -24.14683 -23.84361 -21.98307 -20.74521 -20.04888 -19.39767 -18.95938 -18.59475 -18.05531 -17.40612 -16.85086 -16.57102 -16.05092 -15.68108 -15.24754 -14.97008 -14.84981 -14.54692 -14.40975 -13.83344 -13.56348 -13.48762 -13.19247 -13.05757 -12.68963 -12.46060 -12.26968 -12.19089 -11.69576 -11.58192 -11.36897 -11.28729 -11.13469 -10.98400 -10.90632 -10.73366 -10.39432 -10.36647 -9.88141 -9.75814 -9.56056 -9.46597 -9.35906 -8.88861 -8.77774 -6.85133 -5.73716 -3.06360 -0.10168 0.12823 2.10177 2.51496 2.84408 2.96464 3.04015 3.33271 3.40908 3.45747 3.48781 3.92105 4.30385 4.34098 4.47047 4.79936 4.87492 5.06943 5.08405 5.24411 5.27301 5.29253 5.40237 5.53261 5.61947 5.75436 5.92070 5.93937 5.99417 6.18460 6.31936 6.36366 6.53223 6.62416 6.64806 6.75940 6.85409 7.03834 7.26486 7.28732 7.38129 7.54622 7.59564 8.00812 8.10504 9.07210 9.73700 10.62488 11.43242 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.002772 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.939786 B =10099.292888 C =10988.788399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.293 6.293 3 C 0.029 3.971 4 C 0.369 3.631 5 O -0.456 6.456 6 N -0.522 5.522 7 C 0.513 3.487 8 O -0.446 6.446 9 N -0.488 5.488 10 C 0.149 3.851 11 C 0.566 3.434 12 O -0.507 6.507 13 N -0.689 5.689 14 C 0.148 3.852 15 H 0.091 0.909 16 C -0.157 4.157 17 C -0.147 4.147 18 C 0.170 3.830 19 N -0.613 5.613 20 C -0.223 4.223 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.131 3.869 29 H 0.039 0.961 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.408 0.592 33 H 0.414 0.586 34 H 0.411 0.589 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.873 6.117 -17.920 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.206 6.206 3 C -0.023 4.023 4 C 0.178 3.822 5 O -0.263 6.263 6 N -0.260 5.260 7 C 0.209 3.791 8 O -0.249 6.249 9 N -0.219 5.219 10 C 0.002 3.998 11 C 0.348 3.652 12 O -0.381 6.381 13 N -0.340 5.340 14 C 0.044 3.956 15 H 0.109 0.891 16 C -0.216 4.216 17 C -0.167 4.167 18 C 0.044 3.956 19 N -0.339 5.339 20 C -0.351 4.351 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.005 3.995 29 H 0.057 0.943 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.268 0.732 33 H 0.274 0.726 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -16.384 5.447 -17.649 24.690 hybrid contribution -0.142 0.267 0.379 0.484 sum -16.526 5.714 -17.270 24.577 Atomic orbital electron populations 1.23015 0.77664 1.04384 1.00050 1.86166 1.20427 1.20514 1.93455 1.20461 1.00678 0.89696 0.91481 1.19567 0.91024 0.85914 0.85722 1.84840 1.40900 1.67540 1.33065 1.67306 1.14520 1.11918 1.32263 1.19654 0.88831 0.88705 0.81927 1.84848 1.33424 1.11759 1.94877 1.68010 1.12763 1.10736 1.30343 1.22149 0.93399 0.89147 0.95136 1.17429 0.80363 0.84889 0.82491 1.90845 1.41628 1.19357 1.86310 1.45994 1.59147 1.23807 1.05029 1.21247 0.94518 0.98852 0.80983 0.89056 1.22129 0.95928 1.01687 1.01832 1.23849 0.97841 1.00718 0.94321 1.22309 0.92049 0.96307 0.84893 1.45989 0.99469 1.86100 1.02297 1.19059 0.86256 1.43707 0.86072 0.90217 1.24793 0.96691 1.02477 0.96531 1.69828 1.13458 1.56551 1.16838 0.86062 0.81367 0.77273 0.81138 1.20481 1.21764 1.21713 1.22480 0.87735 0.96683 0.92621 0.94252 0.87800 0.92762 0.73230 0.72597 0.75255 0.91098 0.92828 0.92563 0.89194 0.95577 0.90935 0.93691 0.93728 0.94754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.55 101.05 1.07 1.41 16 2 O -0.29 -3.59 8.78 -46.81 -0.41 -4.00 16 3 C 0.03 0.35 5.81 -38.29 -0.22 0.13 16 4 C 0.37 3.98 7.86 -16.52 -0.13 3.85 16 5 O -0.46 -3.81 13.42 -30.78 -0.41 -4.22 16 6 N -0.52 -5.98 10.46 -14.65 -0.15 -6.14 16 7 C 0.51 5.86 8.69 -91.49 -0.80 5.07 16 8 O -0.45 -4.13 13.64 -18.31 -0.25 -4.38 16 9 N -0.49 -6.05 9.72 -11.31 -0.11 -6.16 16 10 C 0.15 1.95 6.79 -82.60 -0.56 1.39 16 11 C 0.57 8.28 7.78 -12.23 -0.10 8.19 16 12 O -0.51 -8.37 13.87 -16.06 -0.22 -8.59 16 13 N -0.69 -9.67 5.07 -54.68 -0.28 -9.95 16 14 C 0.15 2.21 2.38 -67.93 -0.16 2.05 16 15 H 0.09 1.56 7.41 -51.93 -0.39 1.17 16 16 C -0.16 -1.93 9.31 37.16 0.35 -1.58 16 17 C -0.15 -2.61 3.47 -89.69 -0.31 -2.92 16 18 C 0.17 4.00 7.08 -2.84 -0.02 3.98 16 19 N -0.61 -15.76 3.70 -177.69 -0.66 -16.42 16 20 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 21 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.92 -27.77 11.39 55.49 0.63 -27.14 16 24 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 C 0.13 2.60 7.64 -2.97 -0.02 2.57 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.48 7.55 -51.93 -0.39 0.09 16 32 H 0.41 0.96 9.06 45.56 0.41 1.37 16 33 H 0.41 1.34 9.06 45.56 0.41 1.75 16 34 H 0.41 5.41 7.98 -40.82 -0.33 5.09 16 35 H 0.07 0.84 7.52 -51.93 -0.39 0.44 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 40 H 0.07 1.90 7.17 -51.93 -0.37 1.53 16 41 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -37.30 371.32 -6.41 -43.71 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -3.96 Total: 2.96 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: -1.17 Total: 17.31 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -0.57 Total: -65.80 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -1.30 Total: -21.19 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.30 -6.41 -43.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970734653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.514 kcal (2) G-P(sol) polarization free energy of solvation -37.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds