Wall clock time and date at job start Sat Apr 11 2020 05:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35793 * 117.00394 * 2 1 4 4 C 1.40341 * 120.90883 * 269.98273 * 3 2 1 5 5 O 1.35560 * 120.48346 * 0.03817 * 4 3 2 6 6 N 1.32396 * 119.02542 * 180.02562 * 4 3 2 7 7 C 1.32494 * 120.98247 * 0.02562 * 6 4 3 8 8 O 1.35539 * 118.99885 * 180.02562 * 7 6 4 9 9 N 1.31862 * 122.00424 * 359.70832 * 7 6 4 10 10 C 1.33527 * 120.87541 * 0.57874 * 9 7 6 11 11 C 1.48066 * 120.54082 * 179.70953 * 10 9 7 12 12 O 1.21524 * 119.99826 * 179.72667 * 11 10 9 13 13 N 1.34775 * 119.99597 * 359.72492 * 11 10 9 14 14 C 1.46506 * 119.99693 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.46660 * 35.00912 * 14 13 11 16 16 C 1.52997 * 109.47289 * 275.00198 * 14 13 11 17 17 C 1.52999 * 109.46684 * 155.00124 * 14 13 11 18 18 C 1.53945 * 113.74529 * 278.73866 * 17 14 13 19 19 N 1.47807 * 86.04084 * 222.08774 * 18 17 14 20 20 C 1.36936 * 134.45937 * 204.64279 * 19 18 17 21 21 H 1.08005 * 120.00346 * 179.86277 * 20 19 18 22 22 C 1.38811 * 119.99896 * 359.87268 * 20 19 18 23 23 N 1.31623 * 120.00001 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00199 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47031 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47325 * 119.99616 * 24 22 20 27 27 H 1.48504 * 109.47317 * 239.99651 * 24 22 20 28 28 C 1.47576 * 91.04962 * 24.54882 * 19 18 17 29 29 H 1.09002 * 109.46924 * 59.99653 * 1 2 3 30 30 H 1.08995 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47039 * 300.00112 * 1 2 3 32 32 H 0.96702 * 114.00154 * 90.00379 * 5 4 3 33 33 H 0.96700 * 113.99836 * 89.99414 * 8 7 6 34 34 H 0.97000 * 120.00190 * 359.97438 * 13 11 10 35 35 H 1.09002 * 109.47153 * 179.97438 * 16 14 13 36 36 H 1.09001 * 109.46832 * 60.00146 * 16 14 13 37 37 H 1.09004 * 109.47261 * 300.00128 * 16 14 13 38 38 H 1.09002 * 112.94852 * 50.34103 * 17 14 13 39 39 H 1.08997 * 113.76654 * 336.35575 * 18 17 14 40 40 H 1.09002 * 113.76615 * 107.75050 * 18 17 14 41 41 H 0.96992 * 119.99763 * 180.02562 * 23 22 20 42 42 H 1.09006 * 113.77253 * 221.14869 * 28 19 18 43 43 H 1.09000 * 113.87108 * 89.76663 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 2.3732 1.8520 -1.2041 5 8 2.0781 1.2739 -2.3942 6 7 2.9745 3.0308 -1.1606 7 6 3.2676 3.6046 -0.0029 8 8 3.8830 4.8122 -0.0053 9 7 2.9734 3.0393 1.1515 10 6 2.3720 1.8481 1.1977 11 6 2.0508 1.2173 2.4982 12 8 1.4988 0.1350 2.5287 13 7 2.3707 1.8434 3.6480 14 6 2.0523 1.2195 4.9348 15 1 2.1623 0.1383 4.8514 16 6 0.6115 1.5573 5.3229 17 6 3.0067 1.7478 6.0076 18 6 4.3791 1.0503 6.0143 19 7 4.2601 1.0555 7.4875 20 6 5.1562 1.0188 8.5223 21 1 4.8036 1.0358 9.5430 22 6 6.5179 0.9599 8.2594 23 7 6.9477 0.9389 7.0155 24 14 7.7405 0.9105 9.6709 25 1 7.0075 0.9452 10.9620 26 1 8.5410 -0.3376 9.5890 27 1 8.6449 2.0852 9.5838 28 6 2.7885 1.1186 7.3956 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2056 1.5078 -2.7395 33 1 3.2745 5.5637 -0.0055 34 1 2.8116 2.7070 3.6236 35 1 0.3745 1.0928 6.2800 36 1 -0.0684 1.1809 4.5585 37 1 0.5016 2.6386 5.4063 38 1 3.0674 2.8360 6.0238 39 1 4.3668 0.0524 5.5760 40 1 5.1900 1.6726 5.6357 41 1 7.8992 0.8974 6.8318 42 1 2.3317 1.7953 8.1178 43 1 2.3062 0.1417 7.3641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970734653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:19 Heat of formation + Delta-G solvation = -61.080805 kcal Electronic energy + Delta-G solvation = -29617.911569 eV Core-core repulsion = 25280.238688 eV Total energy + Delta-G solvation = -4337.672881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.88275 -41.01025 -40.02056 -39.63397 -38.67822 -37.83443 -36.24437 -34.78885 -34.11386 -31.88188 -31.37533 -29.36074 -28.10266 -27.02546 -26.36253 -25.59566 -24.89361 -23.32329 -21.95102 -21.21975 -20.39309 -20.13069 -19.38222 -18.87232 -18.75491 -18.33994 -17.66778 -17.26076 -16.91181 -16.48429 -16.14108 -15.84235 -15.79252 -15.65553 -15.22885 -14.85060 -14.71241 -14.27927 -14.09877 -13.93548 -13.44256 -13.39811 -13.25667 -13.08557 -12.93289 -12.90851 -12.70995 -12.53991 -12.33564 -12.04160 -11.96724 -11.77750 -11.74701 -11.56992 -11.38324 -11.21104 -10.88096 -10.42074 -10.31312 -10.08686 -8.91768 -7.90222 -5.24003 -1.01380 -0.67694 1.28351 1.44771 1.46159 1.54915 1.56438 1.84532 2.12065 2.21305 2.42653 2.47282 2.97751 3.30941 3.37870 3.42090 3.63948 3.74147 3.91679 4.02923 4.30127 4.30771 4.45463 4.47156 4.58753 4.60496 4.75461 4.79107 4.83852 4.87419 5.02222 5.07889 5.12242 5.26306 5.35823 5.41247 5.55144 5.65994 5.93730 6.02211 6.27429 6.37812 6.45300 6.53840 6.91465 6.98241 7.61455 8.56958 9.26740 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014962 B = 0.002772 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.939786 B =10099.292888 C =10988.788399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.316 6.316 3 C 0.027 3.973 4 C 0.383 3.617 5 O -0.459 6.459 6 N -0.528 5.528 7 C 0.514 3.486 8 O -0.452 6.452 9 N -0.498 5.498 10 C 0.133 3.867 11 C 0.566 3.434 12 O -0.530 6.530 13 N -0.687 5.687 14 C 0.157 3.843 15 H 0.068 0.932 16 C -0.148 4.148 17 C -0.111 4.111 18 C 0.165 3.835 19 N -0.645 5.645 20 C -0.232 4.232 21 H 0.087 0.913 22 C -0.072 4.072 23 N -0.956 5.956 24 Si 0.979 3.021 25 H -0.262 1.262 26 H -0.296 1.296 27 H -0.291 1.291 28 C 0.133 3.867 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.043 0.957 32 H 0.434 0.566 33 H 0.438 0.562 34 H 0.416 0.584 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.004 0.996 40 H 0.037 0.963 41 H 0.246 0.754 42 H 0.067 0.933 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.707 7.132 -18.241 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C -0.026 4.026 4 C 0.191 3.809 5 O -0.270 6.270 6 N -0.267 5.267 7 C 0.210 3.790 8 O -0.259 6.259 9 N -0.230 5.230 10 C -0.013 4.013 11 C 0.349 3.651 12 O -0.406 6.406 13 N -0.338 5.338 14 C 0.053 3.947 15 H 0.087 0.913 16 C -0.206 4.206 17 C -0.131 4.131 18 C 0.039 3.961 19 N -0.371 5.371 20 C -0.360 4.360 21 H 0.105 0.895 22 C -0.264 4.264 23 N -0.605 5.605 24 Si 0.807 3.193 25 H -0.186 1.186 26 H -0.223 1.223 27 H -0.218 1.218 28 C 0.008 3.992 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.299 0.701 33 H 0.302 0.698 34 H 0.253 0.747 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.022 0.978 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.301 6.504 -17.970 26.460 hybrid contribution 0.359 -0.065 0.381 0.527 sum -17.942 6.438 -17.590 25.938 Atomic orbital electron populations 1.23244 0.75717 1.05430 1.01278 1.86115 1.22468 1.20790 1.93588 1.20531 1.00783 0.89645 0.91627 1.19518 0.90030 0.85336 0.86047 1.84794 1.42991 1.67383 1.31821 1.67430 1.14917 1.12202 1.32114 1.19764 0.88282 0.89254 0.81723 1.84809 1.34398 1.11976 1.94744 1.67968 1.13378 1.10630 1.30997 1.21907 0.94802 0.89906 0.94680 1.17629 0.79806 0.84572 0.83063 1.90822 1.42716 1.20302 1.86779 1.45922 1.59231 1.23887 1.04747 1.21025 0.95661 0.97413 0.80623 0.91333 1.22046 0.93281 1.02986 1.02254 1.23462 0.94425 1.00762 0.94401 1.22188 0.94482 0.95230 0.84193 1.46431 1.02084 1.86127 1.02499 1.19505 0.87140 1.42155 0.87248 0.89518 1.25669 0.98671 1.03159 0.98931 1.70038 1.13140 1.58385 1.18927 0.85000 0.78783 0.76591 0.78900 1.18600 1.22305 1.21834 1.22679 0.84593 0.97869 0.94010 0.90702 0.86912 0.93830 0.70108 0.69761 0.74700 0.90218 0.92485 0.90764 0.87827 0.97835 0.94418 0.94469 0.91453 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.55 113.37 1.20 1.74 16 2 O -0.32 -7.54 8.78 -64.73 -0.57 -8.10 16 3 C 0.03 0.63 5.81 23.11 0.13 0.76 16 4 C 0.38 7.68 7.86 85.12 0.67 8.35 16 5 O -0.46 -6.62 13.42 -76.81 -1.03 -7.65 16 6 N -0.53 -11.36 10.46 -425.95 -4.46 -15.81 16 7 C 0.51 11.22 8.69 180.65 1.57 12.79 16 8 O -0.45 -7.76 13.64 -88.43 -1.21 -8.97 16 9 N -0.50 -12.13 9.72 -302.82 -2.94 -15.07 16 10 C 0.13 3.47 6.79 41.82 0.28 3.75 16 11 C 0.57 16.63 7.78 86.85 0.68 17.30 16 12 O -0.53 -17.67 13.87 16.67 0.23 -17.44 16 13 N -0.69 -19.11 5.07 -445.20 -2.26 -21.37 16 14 C 0.16 4.59 2.38 44.99 0.11 4.69 16 15 H 0.07 2.36 7.41 -2.39 -0.02 2.34 16 16 C -0.15 -3.26 9.31 71.98 0.67 -2.59 16 17 C -0.11 -3.85 3.47 -10.13 -0.04 -3.89 16 18 C 0.16 8.02 7.08 86.44 0.61 8.63 16 19 N -0.64 -33.41 3.70 -716.08 -2.65 -36.06 16 20 C -0.23 -13.21 10.70 84.03 0.90 -12.31 16 21 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 22 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 23 N -0.96 -59.68 11.39 21.65 0.25 -59.43 16 24 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 25 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 28 C 0.13 5.08 7.64 86.49 0.66 5.74 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.04 0.74 7.55 -2.39 -0.02 0.72 16 32 H 0.43 0.76 9.06 -74.06 -0.67 0.09 16 33 H 0.44 2.09 9.06 -74.06 -0.67 1.42 16 34 H 0.42 10.80 7.98 -92.71 -0.74 10.06 16 35 H 0.08 1.64 7.52 -2.39 -0.02 1.62 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.00 0.20 7.99 -2.39 -0.02 0.18 16 40 H 0.04 2.08 7.17 -2.39 -0.02 2.06 16 41 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 Total: -1.00 -82.53 371.32 -5.68 -88.20 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -0.98 Total: 11.69 kcal Atomic # 6 Polarization: 33.34 SS G_CDS: 7.91 Total: 41.25 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -12.06 Total: -147.74 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -2.57 Total: -42.17 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -82.53 -5.68 -88.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970734653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.123 kcal (2) G-P(sol) polarization free energy of solvation -82.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds