Wall clock time and date at job start Sat Apr 11 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35788 * 116.99701 * 2 1 4 4 C 1.40346 * 120.91138 * 269.97906 * 3 2 1 5 5 O 1.35560 * 120.48188 * 0.04392 * 4 3 2 6 6 N 1.32395 * 119.02962 * 180.02562 * 4 3 2 7 7 C 1.32496 * 120.97615 * 0.02562 * 6 4 3 8 8 O 1.35547 * 118.99370 * 179.97438 * 7 6 4 9 9 N 1.31853 * 122.01294 * 359.73124 * 7 6 4 10 10 C 1.33532 * 120.87109 * 0.53266 * 9 7 6 11 11 C 1.48065 * 120.53648 * 179.76429 * 10 9 7 12 12 O 1.21524 * 119.99732 * 179.72349 * 11 10 9 13 13 N 1.34770 * 120.00259 * 359.71961 * 11 10 9 14 14 C 1.46500 * 120.00090 * 180.02562 * 13 11 10 15 15 C 1.53041 * 109.45870 * 204.99554 * 14 13 11 16 16 C 1.53197 * 109.31035 * 178.61223 * 15 14 13 17 17 N 1.46921 * 108.89220 * 54.56963 * 16 15 14 18 18 C 1.36934 * 120.63409 * 126.46494 * 17 16 15 19 19 H 1.08000 * 119.99464 * 331.92132 * 18 17 16 20 20 C 1.38810 * 120.00385 * 151.92408 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17 23 23 H 1.48499 * 109.47320 * 89.99982 * 22 20 18 24 24 H 1.48500 * 109.47299 * 209.99808 * 22 20 18 25 25 H 1.48507 * 109.47261 * 329.99989 * 22 20 18 26 26 C 1.46963 * 118.71124 * 306.63494 * 17 16 15 27 27 C 1.53042 * 109.46253 * 84.93146 * 14 13 11 28 28 H 1.09004 * 109.46758 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46991 * 299.99717 * 1 2 3 30 30 H 1.08994 * 109.47162 * 60.00127 * 1 2 3 31 31 H 0.96703 * 113.99809 * 89.99852 * 5 4 3 32 32 H 0.96694 * 114.00047 * 89.99615 * 8 7 6 33 33 H 0.97004 * 119.99852 * 359.97438 * 13 11 10 34 34 H 1.08996 * 109.46112 * 324.96788 * 14 13 11 35 35 H 1.09005 * 109.49645 * 58.66588 * 15 14 13 36 36 H 1.08998 * 109.50347 * 298.56326 * 15 14 13 37 37 H 1.09000 * 109.58445 * 174.42964 * 16 15 14 38 38 H 1.09004 * 109.58739 * 294.70519 * 16 15 14 39 39 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47297 * 293.57143 * 26 17 16 41 41 H 1.09005 * 109.70555 * 173.29008 * 26 17 16 42 42 H 1.09004 * 109.49452 * 301.34025 * 27 14 13 43 43 H 1.08996 * 109.50041 * 61.43208 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 2.3731 1.8521 -1.2041 5 8 2.0780 1.2740 -2.3942 6 7 2.9742 3.0309 -1.1606 7 6 3.2672 3.6047 -0.0029 8 8 3.8834 4.8120 -0.0052 9 7 2.9734 3.0394 1.1515 10 6 2.3717 1.8482 1.1977 11 6 2.0499 1.2178 2.4982 12 8 1.4977 0.1357 2.5288 13 7 2.3695 1.8439 3.6480 14 6 2.0516 1.2199 4.9348 15 6 1.9198 2.3030 6.0079 16 6 1.5533 1.6500 7.3444 17 7 2.5452 0.6115 7.6543 18 6 3.2051 0.6126 8.8542 19 1 3.3702 1.5421 9.3787 20 6 3.6618 -0.5809 9.3963 21 7 3.1912 -1.7275 8.9534 22 14 4.9440 -0.5596 10.7544 23 1 4.2661 -0.5072 12.0746 24 1 5.7728 -1.7890 10.6721 25 1 5.8128 0.6345 10.5964 26 6 2.8182 -0.4262 6.6500 27 6 3.1705 0.2500 5.3214 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.2055 1.5078 -2.7395 32 1 3.2754 5.5639 -0.0059 33 1 2.8107 2.7075 3.6236 34 1 1.1114 0.6748 4.8516 35 1 1.1385 3.0067 5.7205 36 1 2.8673 2.8321 6.1093 37 1 1.5551 2.4036 8.1319 38 1 0.5632 1.1998 7.2719 39 1 3.5100 -2.5615 9.3325 40 1 1.9325 -1.0481 6.5201 41 1 3.6537 -1.0446 6.9782 42 1 3.2796 -0.5076 4.5452 43 1 4.1063 0.7984 5.4291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003961628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:11 Heat of formation + Delta-G solvation = -60.041991 kcal Electronic energy + Delta-G solvation = -29744.021463 eV Core-core repulsion = 25406.393629 eV Total energy + Delta-G solvation = -4337.627834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.06160 -39.79122 -39.19544 -38.07495 -37.38319 -37.02702 -34.55792 -33.87153 -32.09673 -30.72863 -30.08750 -29.52341 -27.38817 -26.13129 -24.80721 -24.07012 -22.36911 -22.21276 -21.03008 -19.98303 -19.43026 -19.18421 -18.65866 -18.08400 -17.53653 -16.95014 -16.48894 -15.87540 -15.71955 -15.23277 -14.92855 -14.79744 -14.51236 -14.14668 -13.78470 -13.53541 -13.51118 -13.24411 -13.01636 -12.73897 -12.63338 -12.43914 -12.29892 -11.61688 -11.52124 -11.20386 -11.17659 -11.03751 -10.92890 -10.71447 -10.49455 -10.33924 -10.26798 -10.07746 -9.78113 -9.67598 -9.60156 -9.39719 -8.79500 -8.43995 -6.69075 -5.78967 -3.21976 -0.14403 0.07331 2.04922 2.48909 2.83025 2.93462 3.01719 3.30992 3.38059 3.45382 3.47448 3.90360 4.27263 4.29274 4.49574 4.80090 4.87240 5.08704 5.22105 5.28874 5.39307 5.41950 5.43675 5.58740 5.78051 5.89222 6.03697 6.20420 6.25198 6.38702 6.55526 6.59884 6.63443 6.74503 6.79275 6.82956 6.90704 6.99343 7.23934 7.35877 7.55621 7.67632 7.79548 8.12460 8.44700 9.20517 9.83761 10.40202 11.29787 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.002607 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.549633 B =10738.916869 C =11404.157517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.293 6.293 3 C 0.030 3.970 4 C 0.369 3.631 5 O -0.457 6.457 6 N -0.522 5.522 7 C 0.511 3.489 8 O -0.448 6.448 9 N -0.490 5.490 10 C 0.148 3.852 11 C 0.562 3.438 12 O -0.502 6.502 13 N -0.697 5.697 14 C 0.150 3.850 15 C -0.139 4.139 16 C 0.149 3.851 17 N -0.592 5.592 18 C -0.255 4.255 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.174 3.826 27 C -0.148 4.148 28 H 0.105 0.895 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.409 0.591 32 H 0.414 0.586 33 H 0.407 0.593 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.020 0.980 39 H 0.254 0.746 40 H 0.021 0.979 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 11.369 -21.628 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.206 6.206 3 C -0.022 4.022 4 C 0.178 3.822 5 O -0.264 6.264 6 N -0.260 5.260 7 C 0.207 3.793 8 O -0.251 6.251 9 N -0.221 5.221 10 C 0.001 3.999 11 C 0.344 3.656 12 O -0.375 6.375 13 N -0.347 5.347 14 C 0.047 3.953 15 C -0.179 4.179 16 C 0.022 3.978 17 N -0.315 5.315 18 C -0.385 4.385 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.048 3.952 27 C -0.188 4.188 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.269 0.731 32 H 0.274 0.726 33 H 0.242 0.758 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.040 0.960 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.796 10.529 -21.447 24.585 hybrid contribution -0.243 0.373 0.304 0.539 sum -6.039 10.902 -21.143 24.543 Atomic orbital electron populations 1.23033 0.77465 1.04542 1.00089 1.86163 1.20560 1.20415 1.93436 1.20483 1.00540 0.89727 0.91452 1.19583 0.90992 0.85870 0.85760 1.84834 1.40944 1.67548 1.33036 1.67304 1.14601 1.11907 1.32232 1.19652 0.89007 0.88693 0.81981 1.84829 1.33522 1.11820 1.94910 1.67999 1.13062 1.10750 1.30331 1.22235 0.93311 0.89047 0.95285 1.17456 0.80620 0.85087 0.82445 1.90874 1.41307 1.19169 1.86185 1.46245 1.59362 1.23544 1.05533 1.21196 0.99733 0.94602 0.79780 1.22356 1.01519 0.97062 0.96975 1.20828 0.92120 0.92049 0.92788 1.44096 1.43460 1.29137 1.14826 1.19152 1.29860 0.92240 0.97223 0.91666 1.25061 1.00552 0.95670 0.98283 1.70028 1.43066 0.96858 1.44544 0.86312 0.81630 0.77083 0.81811 1.21391 1.21552 1.20481 1.20756 1.00410 0.89984 0.84040 1.22594 0.97462 0.98281 1.00508 0.87671 0.92680 0.94223 0.73142 0.72574 0.75802 0.89660 0.92493 0.91602 0.92254 0.96180 0.93564 0.96049 0.89198 0.92664 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.55 101.05 1.07 1.43 16 2 O -0.29 -3.65 8.78 -46.79 -0.41 -4.06 16 3 C 0.03 0.36 5.81 -38.29 -0.22 0.14 16 4 C 0.37 3.87 7.86 -16.52 -0.13 3.74 16 5 O -0.46 -3.71 13.42 -30.77 -0.41 -4.12 16 6 N -0.52 -5.72 10.46 -14.65 -0.15 -5.88 16 7 C 0.51 5.48 8.69 -91.50 -0.80 4.68 16 8 O -0.45 -3.73 13.64 -18.33 -0.25 -3.98 16 9 N -0.49 -5.77 9.72 -11.30 -0.11 -5.88 16 10 C 0.15 1.92 6.79 -82.59 -0.56 1.36 16 11 C 0.56 8.46 7.78 -12.23 -0.10 8.37 16 12 O -0.50 -8.81 13.87 -16.05 -0.22 -9.03 16 13 N -0.70 -10.05 5.07 -54.64 -0.28 -10.32 16 14 C 0.15 2.53 2.42 -67.89 -0.16 2.37 16 15 C -0.14 -2.25 5.55 -26.61 -0.15 -2.39 16 16 C 0.15 2.99 6.51 -3.71 -0.02 2.97 16 17 N -0.59 -14.59 3.00 -172.29 -0.52 -15.11 16 18 C -0.26 -6.91 9.58 -15.06 -0.14 -7.06 16 19 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -26.17 11.20 55.49 0.62 -25.55 16 22 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 C 0.17 4.19 5.30 -3.69 -0.02 4.17 16 27 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.53 7.55 -51.93 -0.39 0.14 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.41 0.91 9.06 45.56 0.41 1.33 16 32 H 0.41 1.03 9.06 45.56 0.41 1.44 16 33 H 0.41 5.17 7.98 -40.82 -0.33 4.84 16 34 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -35.15 364.04 -6.69 -41.84 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.94 Total: 3.34 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: -1.47 Total: 16.69 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.44 Total: -62.74 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.30 Total: -21.19 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.15 -6.69 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003961628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.201 kcal (2) G-P(sol) polarization free energy of solvation -35.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds