Wall clock time and date at job start Sat Apr 11 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35788 * 116.99701 * 2 1 4 4 C 1.40346 * 120.91138 * 269.97906 * 3 2 1 5 5 O 1.35560 * 120.48188 * 0.04392 * 4 3 2 6 6 N 1.32395 * 119.02962 * 180.02562 * 4 3 2 7 7 C 1.32496 * 120.97615 * 0.02562 * 6 4 3 8 8 O 1.35547 * 118.99370 * 179.97438 * 7 6 4 9 9 N 1.31853 * 122.01294 * 359.73124 * 7 6 4 10 10 C 1.33532 * 120.87109 * 0.53266 * 9 7 6 11 11 C 1.48065 * 120.53648 * 179.76429 * 10 9 7 12 12 O 1.21524 * 119.99732 * 179.72349 * 11 10 9 13 13 N 1.34770 * 120.00259 * 359.71961 * 11 10 9 14 14 C 1.46500 * 120.00090 * 180.02562 * 13 11 10 15 15 C 1.53041 * 109.45870 * 204.99554 * 14 13 11 16 16 C 1.53197 * 109.31035 * 178.61223 * 15 14 13 17 17 N 1.46921 * 108.89220 * 54.56963 * 16 15 14 18 18 C 1.36934 * 120.63409 * 126.46494 * 17 16 15 19 19 H 1.08000 * 119.99464 * 331.92132 * 18 17 16 20 20 C 1.38810 * 120.00385 * 151.92408 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17 23 23 H 1.48499 * 109.47320 * 89.99982 * 22 20 18 24 24 H 1.48500 * 109.47299 * 209.99808 * 22 20 18 25 25 H 1.48507 * 109.47261 * 329.99989 * 22 20 18 26 26 C 1.46963 * 118.71124 * 306.63494 * 17 16 15 27 27 C 1.53042 * 109.46253 * 84.93146 * 14 13 11 28 28 H 1.09004 * 109.46758 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46991 * 299.99717 * 1 2 3 30 30 H 1.08994 * 109.47162 * 60.00127 * 1 2 3 31 31 H 0.96703 * 113.99809 * 89.99852 * 5 4 3 32 32 H 0.96694 * 114.00047 * 89.99615 * 8 7 6 33 33 H 0.97004 * 119.99852 * 359.97438 * 13 11 10 34 34 H 1.08996 * 109.46112 * 324.96788 * 14 13 11 35 35 H 1.09005 * 109.49645 * 58.66588 * 15 14 13 36 36 H 1.08998 * 109.50347 * 298.56326 * 15 14 13 37 37 H 1.09000 * 109.58445 * 174.42964 * 16 15 14 38 38 H 1.09004 * 109.58739 * 294.70519 * 16 15 14 39 39 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 40 40 H 1.09000 * 109.47297 * 293.57143 * 26 17 16 41 41 H 1.09005 * 109.70555 * 173.29008 * 26 17 16 42 42 H 1.09004 * 109.49452 * 301.34025 * 27 14 13 43 43 H 1.08996 * 109.50041 * 61.43208 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 2.3731 1.8521 -1.2041 5 8 2.0780 1.2740 -2.3942 6 7 2.9742 3.0309 -1.1606 7 6 3.2672 3.6047 -0.0029 8 8 3.8834 4.8120 -0.0052 9 7 2.9734 3.0394 1.1515 10 6 2.3717 1.8482 1.1977 11 6 2.0499 1.2178 2.4982 12 8 1.4977 0.1357 2.5288 13 7 2.3695 1.8439 3.6480 14 6 2.0516 1.2199 4.9348 15 6 1.9198 2.3030 6.0079 16 6 1.5533 1.6500 7.3444 17 7 2.5452 0.6115 7.6543 18 6 3.2051 0.6126 8.8542 19 1 3.3702 1.5421 9.3787 20 6 3.6618 -0.5809 9.3963 21 7 3.1912 -1.7275 8.9534 22 14 4.9440 -0.5596 10.7544 23 1 4.2661 -0.5072 12.0746 24 1 5.7728 -1.7890 10.6721 25 1 5.8128 0.6345 10.5964 26 6 2.8182 -0.4262 6.6500 27 6 3.1705 0.2500 5.3214 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.2055 1.5078 -2.7395 32 1 3.2754 5.5639 -0.0059 33 1 2.8107 2.7075 3.6236 34 1 1.1114 0.6748 4.8516 35 1 1.1385 3.0067 5.7205 36 1 2.8673 2.8321 6.1093 37 1 1.5551 2.4036 8.1319 38 1 0.5632 1.1998 7.2719 39 1 3.5100 -2.5615 9.3325 40 1 1.9325 -1.0481 6.5201 41 1 3.6537 -1.0446 6.9782 42 1 3.2796 -0.5076 4.5452 43 1 4.1063 0.7984 5.4291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003961628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:21:10 Heat of formation + Delta-G solvation = -93.660069 kcal Electronic energy + Delta-G solvation = -29745.479253 eV Core-core repulsion = 25406.393629 eV Total energy + Delta-G solvation = -4339.085623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.90127 -40.97435 -39.98011 -39.10739 -38.59303 -37.82697 -36.08576 -34.81080 -33.81379 -31.83256 -31.53384 -31.17558 -28.19432 -27.35780 -26.31771 -24.92448 -23.94281 -23.77040 -22.19781 -21.24678 -20.53839 -20.19567 -19.40412 -18.91831 -18.81925 -18.29518 -17.60013 -17.20096 -16.72968 -16.50237 -16.12092 -15.86916 -15.72508 -15.34833 -15.25603 -15.16750 -14.73651 -14.51571 -14.13624 -14.10508 -13.94202 -13.41996 -13.20052 -13.02530 -12.93494 -12.70034 -12.55517 -12.35910 -12.15140 -12.10396 -12.02837 -11.88276 -11.77477 -11.56007 -11.55453 -11.28834 -10.57815 -10.44725 -10.31344 -10.08646 -8.70088 -7.87107 -5.32771 -1.03624 -0.69533 1.26064 1.47443 1.49670 1.52193 1.58983 1.82367 2.10263 2.18827 2.41231 2.52201 2.96074 3.29515 3.38683 3.62155 3.67195 3.83322 4.00333 4.05004 4.27360 4.31142 4.42665 4.46691 4.57007 4.65994 4.75435 4.79157 4.84709 5.01330 5.05435 5.09508 5.13739 5.32341 5.41402 5.46978 5.65027 5.70513 6.00347 6.25899 6.36638 6.39513 6.44195 6.52406 6.97805 7.14343 7.85389 8.37606 9.20076 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.002607 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.549633 B =10738.916869 C =11404.157517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.317 6.317 3 C 0.025 3.975 4 C 0.385 3.615 5 O -0.459 6.459 6 N -0.527 5.527 7 C 0.516 3.484 8 O -0.450 6.450 9 N -0.496 5.496 10 C 0.136 3.864 11 C 0.563 3.437 12 O -0.532 6.532 13 N -0.687 5.687 14 C 0.162 3.838 15 C -0.123 4.123 16 C 0.143 3.857 17 N -0.610 5.610 18 C -0.261 4.261 19 H 0.073 0.927 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.283 1.283 24 H -0.296 1.296 25 H -0.268 1.268 26 C 0.184 3.816 27 C -0.133 4.133 28 H 0.111 0.889 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.434 0.566 32 H 0.438 0.562 33 H 0.418 0.582 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.017 0.983 39 H 0.249 0.751 40 H -0.005 1.005 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.989 13.920 -23.263 27.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.230 6.230 3 C -0.028 4.028 4 C 0.193 3.807 5 O -0.270 6.270 6 N -0.266 5.266 7 C 0.211 3.789 8 O -0.258 6.258 9 N -0.227 5.227 10 C -0.010 4.010 11 C 0.346 3.654 12 O -0.407 6.407 13 N -0.337 5.337 14 C 0.058 3.942 15 C -0.162 4.162 16 C 0.017 3.983 17 N -0.334 5.334 18 C -0.392 4.392 19 H 0.090 0.910 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.193 1.193 26 C 0.058 3.942 27 C -0.173 4.173 28 H 0.129 0.871 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.299 0.701 32 H 0.303 0.697 33 H 0.256 0.744 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.035 0.965 39 H 0.058 0.942 40 H 0.013 0.987 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.836 13.170 -23.114 27.235 hybrid contribution -0.317 -0.383 0.695 0.855 sum -6.153 12.787 -22.419 26.532 Atomic orbital electron populations 1.23229 0.75817 1.05372 1.01210 1.86113 1.22354 1.20976 1.93587 1.20577 1.00780 0.89662 0.91748 1.19505 0.89964 0.85301 0.85967 1.84788 1.42988 1.67447 1.31817 1.67445 1.14915 1.12038 1.32190 1.19762 0.88184 0.89277 0.81659 1.84797 1.34343 1.11897 1.94736 1.67956 1.13514 1.10297 1.30968 1.21830 0.94912 0.89952 0.94347 1.17742 0.79747 0.84656 0.83233 1.90859 1.42537 1.20549 1.86799 1.45957 1.59495 1.23800 1.04496 1.20834 0.97658 0.94366 0.81360 1.22162 1.03150 0.96778 0.94117 1.21031 0.90870 0.91119 0.95275 1.44342 1.44689 1.29966 1.14376 1.19541 1.29443 0.92420 0.97752 0.90961 1.25845 1.02657 0.95431 1.00921 1.70194 1.44600 0.97246 1.46247 0.85284 0.79171 0.76908 0.79124 1.21008 1.22275 1.19310 1.20450 0.97774 0.89937 0.86075 1.22340 0.98636 0.98578 0.97792 0.87092 0.94138 0.90465 0.70070 0.69693 0.74423 0.91049 0.88693 0.90915 0.91381 0.96533 0.94192 0.98735 0.92788 0.93382 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.55 113.37 1.20 1.79 16 2 O -0.32 -7.64 8.78 -64.67 -0.57 -8.21 16 3 C 0.02 0.56 5.81 23.11 0.13 0.70 16 4 C 0.39 7.22 7.86 85.12 0.67 7.89 16 5 O -0.46 -6.20 13.42 -76.81 -1.03 -7.23 16 6 N -0.53 -10.28 10.46 -425.94 -4.46 -14.74 16 7 C 0.52 9.86 8.69 180.65 1.57 11.44 16 8 O -0.45 -6.27 13.64 -88.52 -1.21 -7.48 16 9 N -0.50 -10.75 9.72 -302.82 -2.94 -13.70 16 10 C 0.14 3.35 6.79 41.82 0.28 3.64 16 11 C 0.56 16.63 7.78 86.85 0.68 17.31 16 12 O -0.53 -18.87 13.87 16.67 0.23 -18.64 16 13 N -0.69 -18.90 5.07 -445.08 -2.26 -21.16 16 14 C 0.16 5.35 2.42 45.02 0.11 5.46 16 15 C -0.12 -3.68 5.55 30.67 0.17 -3.51 16 16 C 0.14 5.59 6.51 86.37 0.56 6.15 16 17 N -0.61 -30.41 3.00 -699.00 -2.10 -32.50 16 18 C -0.26 -14.24 9.58 84.03 0.81 -13.44 16 19 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 20 C -0.05 -3.00 4.92 84.86 0.42 -2.58 16 21 N -0.94 -56.42 11.20 21.65 0.24 -56.17 16 22 Si 0.97 45.04 29.59 68.60 2.03 47.07 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C 0.18 9.22 5.30 86.35 0.46 9.67 16 27 C -0.13 -5.36 5.65 30.67 0.17 -5.18 16 28 H 0.11 1.60 8.14 -2.38 -0.02 1.59 16 29 H 0.04 0.77 7.55 -2.39 -0.02 0.75 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.43 0.50 9.06 -74.06 -0.67 -0.17 16 32 H 0.44 0.86 9.06 -74.06 -0.67 0.19 16 33 H 0.42 9.71 7.98 -92.71 -0.74 8.97 16 34 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 35 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 38 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 40 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.05 3.07 6.07 -2.38 -0.01 3.06 16 42 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -77.79 364.04 -5.81 -83.60 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -0.98 Total: 9.84 kcal Atomic # 6 Polarization: 32.10 SS G_CDS: 7.22 Total: 39.32 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -11.51 Total: -138.27 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -2.58 Total: -41.57 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -77.79 -5.81 -83.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003961628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.056 kcal (2) G-P(sol) polarization free energy of solvation -77.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds