Wall clock time and date at job start Sat Apr 11 2020 05:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.46969 * 2 1 4 4 C 1.36035 * 116.99621 * 180.02562 * 3 2 1 5 5 C 1.38648 * 119.99657 * 0.02562 * 4 3 2 6 6 C 1.38129 * 120.03959 * 179.97438 * 5 4 3 7 7 C 1.38834 * 120.02591 * 359.72491 * 6 5 4 8 8 N 1.40143 * 120.00996 * 180.30228 * 7 6 5 9 9 C 1.34775 * 119.99931 * 213.35525 * 8 7 6 10 10 O 1.21596 * 120.00406 * 5.06386 * 9 8 7 11 11 N 1.34778 * 120.00121 * 185.06952 * 9 8 7 12 12 C 1.47029 * 125.64529 * 359.68851 * 11 9 8 13 13 C 1.54328 * 107.26400 * 178.85064 * 12 11 9 14 14 C 1.55157 * 103.02163 * 338.14301 * 13 12 11 15 15 O 1.42908 * 111.00083 * 277.22956 * 14 13 12 16 16 C 1.50705 * 111.03848 * 153.40098 * 14 13 12 17 17 H 1.07999 * 119.99138 * 274.85437 * 16 14 13 18 18 C 1.37870 * 120.00418 * 94.85255 * 16 14 13 19 19 N 1.31519 * 119.99949 * 173.09220 * 18 16 14 20 20 Si 1.86797 * 120.00050 * 353.09674 * 18 16 14 21 21 H 1.48503 * 109.47471 * 87.13004 * 20 18 16 22 22 H 1.48502 * 109.47027 * 207.12994 * 20 18 16 23 23 H 1.48500 * 109.47286 * 327.13055 * 20 18 16 24 24 C 1.47419 * 125.65170 * 179.97438 * 11 9 8 25 25 C 1.38821 * 119.98572 * 0.55507 * 7 6 5 26 26 C 1.38281 * 119.95896 * 359.44095 * 25 7 6 27 27 F 1.35107 * 120.00785 * 180.25438 * 26 25 7 28 28 H 1.08993 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46970 * 300.00728 * 1 2 3 30 30 H 1.09004 * 109.46811 * 59.99937 * 1 2 3 31 31 H 1.09000 * 109.46970 * 239.99272 * 2 1 3 32 32 H 1.09002 * 109.46398 * 119.99728 * 2 1 3 33 33 H 1.08000 * 119.97326 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.98599 * 180.02562 * 6 5 4 35 35 H 0.96997 * 119.99941 * 33.34342 * 8 7 6 36 36 H 1.08996 * 109.87925 * 298.39346 * 12 11 9 37 37 H 1.08994 * 109.88143 * 59.56181 * 12 11 9 38 38 H 1.09005 * 110.85179 * 219.67047 * 13 12 11 39 39 H 1.09002 * 110.51572 * 96.45189 * 13 12 11 40 40 H 0.96697 * 113.99427 * 177.45821 * 15 14 13 41 41 H 0.97001 * 120.00172 * 180.02562 * 19 18 16 42 42 H 1.09004 * 110.36871 * 322.93199 * 24 11 9 43 43 H 1.09003 * 110.36495 * 85.14263 * 24 11 9 44 44 H 1.08000 * 120.02339 * 179.72170 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3549 1.5254 -0.0005 5 6 4.1994 0.4258 -0.0016 6 6 5.5690 0.6057 -0.0027 7 6 6.1012 1.8879 -0.0085 8 7 7.4907 2.0700 -0.0160 9 6 8.0354 3.1258 0.6205 10 8 7.3321 3.8687 1.2778 11 7 9.3598 3.3584 0.5283 12 6 10.3230 2.5409 -0.2237 13 6 11.7079 3.2033 -0.0655 14 6 11.3546 4.6675 0.3067 15 8 11.0660 5.4377 -0.8620 16 6 12.4600 5.3034 1.1097 17 1 12.4967 5.1672 2.1804 18 6 13.4245 6.0590 0.4774 19 7 14.3087 6.7247 1.1879 20 14 13.4752 6.1374 -1.3882 21 1 12.5804 7.2235 -1.8626 22 1 14.8650 6.4106 -1.8345 23 1 13.0207 4.8404 -1.9507 24 6 10.0834 4.4712 1.1696 25 6 5.2567 2.9897 -0.0016 26 6 3.8857 2.8090 -0.0006 27 9 3.0629 3.8806 0.0010 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.7861 -0.5720 -0.0024 34 1 6.2260 -0.2515 -0.0039 35 1 8.0604 1.4362 -0.4791 36 1 10.3456 1.5289 0.1806 37 1 10.0446 2.5153 -1.2772 38 1 12.2646 3.1669 -1.0020 39 1 12.2700 2.7262 0.7373 40 1 10.8019 6.3493 -0.6769 41 1 14.9870 7.2566 0.7431 42 1 9.4747 5.3754 1.1596 43 1 10.3542 4.2083 2.1922 44 1 5.6701 3.9874 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425223363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:48 Heat of formation + Delta-G solvation = -120.065399 kcal Electronic energy + Delta-G solvation = -29097.776272 eV Core-core repulsion = 24737.625666 eV Total energy + Delta-G solvation = -4360.150606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.81945 -40.77562 -39.90871 -38.45902 -37.27604 -34.91991 -34.36787 -32.42713 -32.08665 -30.91924 -30.46386 -28.77252 -28.16428 -25.35900 -24.54790 -23.00244 -22.58008 -22.00406 -20.00867 -19.87274 -18.75189 -18.38712 -17.56055 -17.48901 -16.70892 -16.56821 -15.83590 -15.67674 -15.40688 -15.29381 -15.10151 -14.76250 -14.57237 -14.22227 -13.91118 -13.68760 -13.39892 -13.21921 -13.13733 -12.80503 -12.62237 -12.50840 -12.30438 -12.11365 -12.05539 -11.74995 -11.62680 -11.39719 -11.21817 -11.06893 -10.60404 -10.44603 -10.29743 -10.07639 -9.94596 -9.34577 -9.01775 -8.72457 -8.63218 -8.26420 -7.83080 -6.26488 -4.38741 0.93441 1.03661 2.57384 2.83257 3.10943 3.38066 3.47524 3.54225 3.63906 3.90393 4.13406 4.41065 4.41215 4.51874 4.62589 4.77626 4.84156 4.89912 4.94233 5.02945 5.13436 5.23837 5.29137 5.38431 5.45174 5.54578 5.62025 5.65032 5.71567 5.74964 5.86659 5.97953 6.01733 6.25227 6.39223 6.44925 6.54225 6.64230 6.65988 6.95601 7.08541 7.10057 7.35995 8.01000 8.02998 8.55185 8.61697 8.74067 9.33459 10.82336 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031678 B = 0.002241 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.680982 B =12489.134257 C =12767.706453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.310 6.310 4 C 0.073 3.927 5 C -0.161 4.161 6 C -0.122 4.122 7 C 0.172 3.828 8 N -0.686 5.686 9 C 0.716 3.284 10 O -0.578 6.578 11 N -0.621 5.621 12 C 0.097 3.903 13 C -0.118 4.118 14 C 0.220 3.780 15 O -0.559 6.559 16 C -0.554 4.554 17 H 0.083 0.917 18 C 0.072 3.928 19 N -0.884 5.884 20 Si 0.952 3.048 21 H -0.294 1.294 22 H -0.326 1.326 23 H -0.271 1.271 24 C 0.107 3.893 25 C -0.120 4.120 26 C 0.093 3.907 27 F -0.130 7.130 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.408 0.592 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.374 0.626 41 H 0.268 0.732 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.082 -16.859 -5.052 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.225 6.225 4 C 0.027 3.973 5 C -0.180 4.180 6 C -0.144 4.144 7 C 0.076 3.924 8 N -0.334 5.334 9 C 0.419 3.581 10 O -0.456 6.456 11 N -0.357 5.357 12 C -0.026 4.026 13 C -0.157 4.157 14 C 0.179 3.821 15 O -0.367 6.367 16 C -0.592 4.592 17 H 0.101 0.899 18 C -0.133 4.133 19 N -0.519 5.519 20 Si 0.788 3.212 21 H -0.222 1.222 22 H -0.258 1.258 23 H -0.197 1.197 24 C -0.015 4.015 25 C -0.142 4.142 26 C 0.072 3.928 27 F -0.108 7.108 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.244 0.756 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.223 0.777 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.463 -16.539 -4.812 26.747 hybrid contribution 0.304 0.169 -0.789 0.862 sum -20.159 -16.370 -5.601 26.565 Atomic orbital electron populations 1.21774 0.92645 1.02832 1.03700 1.22812 0.96016 0.81892 1.01421 1.86147 1.17907 1.29312 1.89109 1.18862 0.83413 0.92730 1.02320 1.20822 0.93051 0.97686 1.06431 1.20687 0.94765 0.95550 1.03364 1.17075 0.82349 0.92602 1.00357 1.42653 1.04965 1.28894 1.56870 1.15446 0.81383 0.81221 0.80053 1.90931 1.59910 1.49106 1.45642 1.47749 1.04282 1.30934 1.52708 1.22143 0.91090 0.93998 0.95399 1.22923 0.93517 0.96157 1.03060 1.20238 0.90873 0.88741 0.82232 1.86140 1.88006 1.27569 1.34977 1.21101 1.09088 1.33210 0.95782 0.89905 1.25150 0.94473 0.93420 1.00288 1.69960 1.16919 1.28180 1.36793 0.85637 0.73195 0.79008 0.83401 1.22154 1.25760 1.19718 1.23073 0.93437 0.87798 0.97185 1.21069 0.89940 1.01403 1.01742 1.16712 0.87419 0.80988 1.07678 1.91507 1.71558 1.53653 1.94125 0.90314 0.91430 0.91455 0.91929 0.91909 0.84262 0.84721 0.75579 0.92465 0.92133 0.90078 0.89485 0.77747 0.92280 0.90939 0.90939 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.05 0.37 5.46 37.16 0.20 0.57 16 3 O -0.31 -3.50 10.00 -19.85 -0.20 -3.70 16 4 C 0.07 0.87 6.69 -39.19 -0.26 0.61 16 5 C -0.16 -1.49 9.03 -39.47 -0.36 -1.85 16 6 C -0.12 -1.19 9.96 -39.40 -0.39 -1.58 16 7 C 0.17 2.20 6.29 -83.62 -0.53 1.67 16 8 N -0.69 -8.89 5.30 -14.19 -0.08 -8.96 16 9 C 0.72 12.23 8.23 -86.92 -0.72 11.51 16 10 O -0.58 -11.81 14.26 5.28 0.08 -11.73 16 11 N -0.62 -10.59 3.33 -176.25 -0.59 -11.18 16 12 C 0.10 1.41 6.16 -3.06 -0.02 1.39 16 13 C -0.12 -2.13 5.96 -24.89 -0.15 -2.28 16 14 C 0.22 4.60 0.71 -89.63 -0.06 4.54 16 15 O -0.56 -11.71 8.69 -35.23 -0.31 -12.02 16 16 C -0.55 -14.03 8.87 -34.44 -0.31 -14.34 16 17 H 0.08 2.29 8.01 -52.49 -0.42 1.87 16 18 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 19 N -0.88 -25.39 13.96 55.43 0.77 -24.62 16 20 Si 0.95 22.43 24.67 -169.99 -4.19 18.24 16 21 H -0.29 -6.81 7.07 56.52 0.40 -6.41 16 22 H -0.33 -7.96 7.11 56.52 0.40 -7.56 16 23 H -0.27 -6.23 5.59 56.52 0.32 -5.92 16 24 C 0.11 2.09 6.09 -2.55 -0.02 2.08 16 25 C -0.12 -1.76 8.63 -39.35 -0.34 -2.10 16 26 C 0.09 1.31 7.31 -39.32 -0.29 1.02 16 27 F -0.13 -1.99 17.11 2.25 0.04 -1.96 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 32 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 33 H 0.14 0.86 6.29 -52.49 -0.33 0.53 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.41 4.04 7.81 -40.82 -0.32 3.72 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.49 6.89 -51.93 -0.36 1.14 16 39 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 40 H 0.37 7.24 8.47 45.56 0.39 7.63 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 43 H 0.07 1.44 7.99 -51.93 -0.42 1.03 16 44 H 0.16 2.63 6.39 -52.49 -0.34 2.29 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -32.46 362.54 -7.13 -39.59 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.18 Total: 8.22 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.94 Total: 2.65 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.11 Total: -44.76 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.43 Total: -27.45 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.19 Total: 18.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.46 -7.13 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425223363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.476 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds