Wall clock time and date at job start Sat Apr 11 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00496 * 2 1 4 4 C 1.50701 * 109.46829 * 269.99958 * 3 2 1 5 5 C 1.38378 * 119.92663 * 269.71746 * 4 3 2 6 6 C 1.38340 * 120.29204 * 179.77011 * 5 4 3 7 7 C 1.37983 * 120.14244 * 0.50767 * 6 5 4 8 8 C 1.39552 * 119.85208 * 359.75113 * 7 6 5 9 9 C 1.47852 * 120.13988 * 179.97438 * 8 7 6 10 10 N 1.34769 * 119.99973 * 0.02562 * 9 8 7 11 11 O 1.21557 * 119.99496 * 180.02562 * 9 8 7 12 12 C 1.37936 * 119.92559 * 89.99825 * 4 3 2 13 13 C 1.34778 * 119.99786 * 179.97438 * 2 1 3 14 14 O 1.21610 * 119.99918 * 185.30724 * 13 2 1 15 15 C 1.47430 * 119.99892 * 5.31054 * 13 2 1 16 16 C 1.39224 * 120.28549 * 313.06260 * 15 13 2 17 17 C 1.38220 * 120.09485 * 180.27827 * 16 15 13 18 18 C 1.38821 * 120.67291 * 359.70433 * 17 16 15 19 19 C 1.37601 * 120.57272 * 359.97438 * 18 17 16 20 20 C 1.40704 * 119.88315 * 0.02732 * 19 18 17 21 21 C 1.40884 * 120.32886 * 179.97438 * 20 19 18 22 22 H 1.08006 * 120.00090 * 149.58550 * 21 20 19 23 23 C 1.40270 * 120.00227 * 329.57961 * 21 20 19 24 24 N 1.30634 * 119.99946 * 336.13300 * 23 21 20 25 25 Si 1.86798 * 120.00070 * 156.13046 * 23 21 20 26 26 H 1.48504 * 109.47205 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.47095 * 300.00358 * 25 23 21 28 28 H 1.48500 * 109.47326 * 60.00112 * 25 23 21 29 29 H 1.08997 * 109.47109 * 265.77188 * 1 2 3 30 30 H 1.09007 * 109.46804 * 25.77036 * 1 2 3 31 31 H 1.08993 * 109.47249 * 145.76412 * 1 2 3 32 32 H 1.09001 * 109.46922 * 29.99725 * 3 2 1 33 33 H 1.08992 * 109.47430 * 149.99790 * 3 2 1 34 34 H 1.07997 * 119.85448 * 0.02562 * 5 4 3 35 35 H 1.07996 * 119.92966 * 180.26422 * 6 5 4 36 36 H 1.08001 * 120.06759 * 179.76674 * 7 6 5 37 37 H 0.96995 * 120.00551 * 359.97438 * 10 9 8 38 38 H 0.97010 * 119.99895 * 180.02562 * 10 9 8 39 39 H 1.08003 * 120.07688 * 359.95743 * 12 4 3 40 40 H 1.08002 * 119.95056 * 0.02562 * 16 15 13 41 41 H 1.07997 * 119.66272 * 179.71403 * 17 16 15 42 42 H 1.08004 * 119.71797 * 180.02562 * 18 17 16 43 43 H 1.07997 * 120.05979 * 180.02562 * 19 18 17 44 44 H 0.96996 * 120.00107 * 354.15528 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 6 3.6051 1.3080 -2.0698 6 6 3.8411 1.6990 -3.3756 7 6 2.9284 2.4955 -4.0361 8 6 1.7627 2.9024 -3.3856 9 6 0.7806 3.7565 -4.0872 10 7 1.0100 4.1432 -5.3576 11 8 -0.2336 4.1098 -3.5179 12 6 1.5282 2.5000 -2.0697 13 6 2.1388 -1.1672 0.0005 14 8 3.3510 -1.1695 0.0979 15 6 1.4063 -2.4413 -0.1171 16 6 0.2777 -2.6770 0.6634 17 6 -0.4027 -3.8751 0.5540 18 6 0.0232 -4.8528 -0.3347 19 6 1.1313 -4.6464 -1.1240 20 6 1.8418 -3.4354 -1.0321 21 6 2.9778 -3.2144 -1.8354 22 1 3.2298 -2.2125 -2.1505 23 6 3.7818 -4.2954 -2.2260 24 7 3.7906 -5.3925 -1.5169 25 14 4.8398 -4.1662 -3.7600 26 1 5.5885 -5.4341 -3.9532 27 1 3.9727 -3.9192 -4.9400 28 1 5.7989 -3.0429 -3.6067 29 1 -0.3633 -0.0758 1.0248 30 1 -0.3633 0.9255 -0.4468 31 1 -0.3633 -0.8495 -0.5781 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1383 0.5138 34 1 4.3247 0.6879 -1.5559 35 1 4.7436 1.3833 -3.8779 36 1 3.1156 2.8031 -5.0543 37 1 1.8195 3.8616 -5.8117 38 1 0.3658 4.7039 -5.8178 39 1 0.6279 2.8113 -1.5608 40 1 -0.0642 -1.9241 1.3581 41 1 -1.2746 -4.0524 1.1662 42 1 -0.5202 -5.7833 -0.4078 43 1 1.4551 -5.4126 -1.8129 44 1 3.3085 -5.4305 -0.6761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433620488.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:57 Heat of formation + Delta-G solvation = -30.778907 kcal Electronic energy + Delta-G solvation = -28927.619418 eV Core-core repulsion = 25002.109789 eV Total energy + Delta-G solvation = -3925.509629 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.27307 -39.39112 -38.23734 -37.03715 -35.05385 -34.08170 -33.85266 -31.85095 -31.02948 -29.94351 -29.40420 -27.01708 -25.85957 -24.94649 -24.13303 -22.32257 -21.60193 -21.02378 -20.29235 -18.93569 -18.15504 -17.72754 -16.91274 -16.29791 -16.01335 -15.71547 -15.33611 -14.96015 -14.83825 -14.73786 -14.43901 -14.14587 -13.99961 -13.75423 -13.38736 -12.84011 -12.68777 -12.55589 -12.30679 -12.23898 -12.03709 -11.85517 -11.67780 -11.49024 -11.29285 -11.12853 -10.91870 -10.76167 -10.43815 -10.20337 -10.09424 -9.94013 -9.60419 -9.08472 -9.05896 -8.94536 -8.62210 -8.16479 -7.75773 -7.66966 -7.24844 -4.51272 0.83164 1.30551 2.35338 2.72273 2.77319 3.12532 3.23605 3.30692 3.32426 3.54064 3.82852 3.97879 4.00519 4.52006 4.64497 4.69720 4.83984 5.06374 5.20428 5.36563 5.38018 5.47232 5.53454 5.69722 5.77727 5.82826 5.90091 6.01805 6.03798 6.13118 6.17315 6.21267 6.40389 6.42664 6.54024 6.63306 6.75961 6.87790 6.97785 7.02627 7.10958 7.25713 7.50119 7.58693 7.70139 7.80347 7.96579 8.05528 8.15448 8.16630 8.64701 8.76735 9.13189 9.98265 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.004154 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.434341 B = 6738.757950 C = 8145.921111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.623 5.623 3 C 0.156 3.844 4 C -0.107 4.107 5 C -0.061 4.061 6 C -0.128 4.128 7 C -0.087 4.087 8 C -0.151 4.151 9 C 0.567 3.433 10 N -0.853 5.853 11 O -0.544 6.544 12 C -0.046 4.046 13 C 0.584 3.416 14 O -0.536 6.536 15 C -0.259 4.259 16 C -0.048 4.048 17 C -0.261 4.261 18 C -0.073 4.073 19 C -0.210 4.210 20 C 0.129 3.871 21 C -0.482 4.482 22 H 0.079 0.921 23 C 0.040 3.960 24 N -0.786 5.786 25 Si 1.063 2.937 26 H -0.272 1.272 27 H -0.274 1.274 28 H -0.273 1.273 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.401 0.599 38 H 0.403 0.597 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 14.055 -5.433 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.358 5.358 3 C 0.033 3.967 4 C -0.108 4.108 5 C -0.080 4.080 6 C -0.146 4.146 7 C -0.106 4.106 8 C -0.154 4.154 9 C 0.354 3.646 10 N -0.417 5.417 11 O -0.422 6.422 12 C -0.066 4.066 13 C 0.377 3.623 14 O -0.412 6.412 15 C -0.264 4.264 16 C -0.066 4.066 17 C -0.281 4.281 18 C -0.092 4.092 19 C -0.229 4.229 20 C 0.125 3.875 21 C -0.509 4.509 22 H 0.097 0.903 23 C -0.183 4.183 24 N -0.408 5.408 25 Si 0.886 3.114 26 H -0.197 1.197 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.230 0.770 38 H 0.234 0.766 39 H 0.150 0.850 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.124 0.876 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.637 13.260 -5.775 14.477 hybrid contribution -1.127 0.880 0.496 1.513 sum -1.763 14.140 -5.279 15.196 Atomic orbital electron populations 1.21859 0.80108 1.02895 1.01103 1.47939 1.06557 1.05060 1.76237 1.20217 0.98926 0.85976 0.91627 1.20364 0.94639 0.97763 0.98062 1.21548 0.96656 0.95361 0.94390 1.21137 0.99909 0.98523 0.95066 1.21215 0.93223 0.97074 0.99042 1.19750 0.96352 1.03309 0.95986 1.18332 0.85597 0.79164 0.81492 1.43751 1.27071 1.55883 1.15019 1.90802 1.28187 1.56600 1.66569 1.21110 0.98133 0.94470 0.92837 1.18507 0.86875 0.83114 0.73811 1.90660 1.14251 1.87137 1.49181 1.19345 1.02613 0.97348 1.07046 1.20814 0.93175 0.96078 0.96560 1.20227 1.04233 0.96405 1.07214 1.20728 0.95935 0.96975 0.95521 1.21159 0.98057 0.99750 1.03933 1.17375 0.91886 0.89818 0.88465 1.20570 1.07419 0.97233 1.25726 0.90320 1.27078 0.97514 0.91176 1.02553 1.70366 1.30905 1.27759 1.11753 0.83676 0.76227 0.77384 0.74120 1.19696 1.19944 1.19871 0.93227 0.92197 0.90126 0.90184 0.88920 0.84572 0.85262 0.85957 0.76959 0.76617 0.84980 0.88555 0.88928 0.88975 0.87559 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 9.02 59.84 0.54 1.80 16 2 N -0.62 -11.09 2.86 -184.24 -0.53 -11.62 16 3 C 0.16 2.33 5.55 -5.19 -0.03 2.30 16 4 C -0.11 -1.58 5.46 -104.68 -0.57 -2.15 16 5 C -0.06 -0.92 9.69 -39.49 -0.38 -1.30 16 6 C -0.13 -1.62 10.03 -39.64 -0.40 -2.01 16 7 C -0.09 -0.96 9.54 -39.19 -0.37 -1.33 16 8 C -0.15 -1.94 5.87 -104.97 -0.62 -2.56 16 9 C 0.57 7.14 8.05 -12.33 -0.10 7.04 16 10 N -0.85 -6.75 8.82 30.53 0.27 -6.48 16 11 O -0.54 -8.82 17.18 5.32 0.09 -8.73 16 12 C -0.05 -0.64 9.24 -39.19 -0.36 -1.01 16 13 C 0.58 13.16 6.59 -12.52 -0.08 13.08 16 14 O -0.54 -13.52 15.07 5.27 0.08 -13.44 16 15 C -0.26 -6.19 5.03 -104.37 -0.53 -6.71 16 16 C -0.05 -1.01 7.68 -39.22 -0.30 -1.31 16 17 C -0.26 -5.47 10.03 -39.37 -0.39 -5.86 16 18 C -0.07 -1.61 10.01 -39.60 -0.40 -2.00 16 19 C -0.21 -5.18 7.97 -38.88 -0.31 -5.49 16 20 C 0.13 3.35 5.21 -106.54 -0.56 2.79 16 21 C -0.48 -12.82 7.73 -37.82 -0.29 -13.12 16 22 H 0.08 2.14 7.15 -52.48 -0.38 1.77 16 23 C 0.04 1.01 4.94 -17.30 -0.09 0.93 16 24 N -0.79 -20.77 12.47 55.56 0.69 -20.08 16 25 Si 1.06 21.65 30.00 -169.99 -5.10 16.55 16 26 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 28 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 29 H 0.05 0.66 7.07 -51.93 -0.37 0.30 16 30 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 31 H 0.08 1.37 6.08 -51.93 -0.32 1.06 16 32 H 0.08 0.96 8.01 -51.93 -0.42 0.54 16 33 H 0.09 1.46 7.29 -51.93 -0.38 1.08 16 34 H 0.14 2.26 7.85 -52.49 -0.41 1.85 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.12 0.89 6.41 -52.49 -0.34 0.55 16 37 H 0.40 2.09 6.86 -40.82 -0.28 1.81 16 38 H 0.40 2.56 8.93 -40.82 -0.36 2.20 16 39 H 0.13 1.80 7.65 -52.48 -0.40 1.40 16 40 H 0.10 1.77 6.09 -52.49 -0.32 1.45 16 41 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 43 H 0.11 2.68 6.82 -52.49 -0.36 2.33 16 44 H 0.30 8.20 6.80 -40.82 -0.28 7.93 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -32.64 370.61 -9.23 -41.87 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.08 Total: 13.25 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -5.24 Total: -16.91 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.44 Total: -38.17 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.17 Total: -22.17 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.10 Total: 16.55 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.64 -9.23 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433620488.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.086 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds