Wall clock time and date at job start Sat Apr 11 2020 05:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99710 * 2 1 4 4 O 1.21583 * 120.00460 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99859 * 180.02562 * 3 2 1 6 6 C 1.46504 * 120.00450 * 179.97438 * 5 3 2 7 7 H 1.09001 * 110.63597 * 31.85359 * 6 5 3 8 8 C 1.55154 * 110.72118 * 154.99653 * 6 5 3 9 9 C 1.54910 * 101.57936 * 153.86799 * 8 6 5 10 10 N 1.47430 * 104.83024 * 322.99270 * 9 8 6 11 11 C 1.34784 * 125.64344 * 204.09365 * 10 9 8 12 12 O 1.21587 * 119.99271 * 180.02562 * 11 10 9 13 13 N 1.34770 * 120.00264 * 0.02562 * 11 10 9 14 14 C 1.46500 * 119.99955 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47175 * 324.99716 * 14 13 11 16 16 C 1.50697 * 109.46896 * 204.99514 * 14 13 11 17 17 H 1.07994 * 120.00496 * 0.02562 * 16 14 13 18 18 C 1.37887 * 119.99690 * 179.97438 * 16 14 13 19 19 N 1.31507 * 120.00093 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99676 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47116 * 60.00382 * 20 18 16 22 22 H 1.48503 * 109.46756 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47119 * 300.00049 * 20 18 16 24 24 C 1.53006 * 109.46998 * 84.99585 * 14 13 11 25 25 F 1.39900 * 109.46764 * 179.97438 * 24 14 13 26 26 F 1.39897 * 109.47129 * 299.99840 * 24 14 13 27 27 F 1.39903 * 109.46814 * 60.00332 * 24 14 13 28 28 C 1.47017 * 108.70290 * 24.35563 * 10 9 8 29 29 H 1.09002 * 109.47229 * 60.00097 * 1 2 3 30 30 H 1.09001 * 109.47592 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47382 * 300.00220 * 1 2 3 32 32 H 0.96997 * 119.99945 * 179.97438 * 2 1 3 33 33 H 0.97006 * 119.99645 * 359.97438 * 5 3 2 34 34 H 1.08999 * 111.00439 * 35.79722 * 8 6 5 35 35 H 1.08997 * 111.00402 * 271.94476 * 8 6 5 36 36 H 1.08998 * 110.36904 * 204.15363 * 9 8 6 37 37 H 1.09000 * 110.45945 * 81.87180 * 9 8 6 38 38 H 0.96997 * 119.99935 * 359.97438 * 13 11 10 39 39 H 0.96999 * 120.00118 * 179.97438 * 19 18 16 40 40 H 1.08996 * 109.88085 * 118.13331 * 28 10 9 41 41 H 1.09003 * 109.88103 * 239.29797 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1673 -0.0005 6 6 4.2191 2.4360 -0.0011 7 1 3.6611 3.2021 0.5373 8 6 5.6328 2.2539 0.6118 9 6 6.4194 3.3980 -0.0754 10 7 5.8807 3.4557 -1.4465 11 6 6.5253 3.9466 -2.5236 12 8 5.9813 3.9441 -3.6110 13 7 7.7728 4.4402 -2.3954 14 6 8.4732 4.9743 -3.5660 15 1 8.2023 4.3935 -4.4477 16 6 9.9612 4.8866 -3.3443 17 1 10.3467 4.4740 -2.4238 18 6 10.8306 5.3323 -4.3174 19 7 10.3613 5.8334 -5.4390 20 14 12.6751 5.2230 -4.0429 21 1 13.0619 3.8038 -3.8389 22 1 13.3850 5.7634 -5.2300 23 1 13.0445 6.0143 -2.8418 24 6 8.0741 6.4364 -3.7760 25 9 8.7434 6.9465 -4.8936 26 9 6.6927 6.5177 -3.9818 27 9 8.4218 7.1818 -2.6443 28 6 4.5217 2.8949 -1.4431 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.9499 -0.8400 0.0004 33 1 3.9716 0.3272 -0.0005 34 1 6.0497 1.2813 0.3503 35 1 5.6103 2.3897 1.6930 36 1 7.4845 3.1673 -0.0956 37 1 6.2462 4.3426 0.4402 38 1 8.2067 4.4425 -1.5278 39 1 10.9728 6.1473 -6.1233 40 1 3.8054 3.6572 -1.7497 41 1 4.4710 2.0420 -2.1199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434755961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:01 Heat of formation + Delta-G solvation = -180.598992 kcal Electronic energy + Delta-G solvation = -30532.835945 eV Core-core repulsion = 25648.123627 eV Total energy + Delta-G solvation = -4884.712318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.28272 -45.93387 -45.55600 -40.49162 -39.55087 -37.52056 -34.80935 -34.61722 -34.29683 -32.53221 -30.67513 -29.00087 -27.91623 -26.40924 -24.53690 -23.53704 -21.66545 -21.37251 -20.84287 -19.51246 -18.94661 -18.24078 -16.96735 -16.77828 -16.76023 -16.56363 -16.07169 -15.61909 -15.54729 -15.00281 -14.75428 -14.68277 -14.39093 -14.05029 -13.54630 -13.27536 -13.14251 -12.91151 -12.71561 -12.56757 -12.50451 -12.33987 -12.31606 -12.24733 -12.07037 -11.89230 -11.78290 -11.74104 -11.15472 -11.05444 -10.86131 -10.76471 -10.47051 -10.38490 -9.66760 -9.61279 -9.51820 -9.17041 -8.71055 -8.48640 -8.07538 -6.21941 -4.46032 2.34763 2.93382 3.05982 3.20042 3.25164 3.27124 3.76292 3.96183 4.18125 4.27089 4.38853 4.60729 4.69410 4.85693 4.86492 4.95428 5.09107 5.20767 5.23127 5.48297 5.51597 5.54912 5.77008 5.81436 5.88352 5.93129 5.95385 6.11288 6.24029 6.25127 6.45816 6.59930 6.91062 7.23975 7.40585 7.63199 7.68188 7.69685 8.33465 8.49969 8.62108 9.15356 9.26360 10.69731 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.002678 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.320896 B =10453.841126 C =10966.426587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.752 5.752 3 C 0.702 3.298 4 O -0.585 6.585 5 N -0.735 5.735 6 C 0.152 3.848 7 H 0.108 0.892 8 C -0.136 4.136 9 C 0.101 3.899 10 N -0.641 5.641 11 C 0.717 3.283 12 O -0.578 6.578 13 N -0.723 5.723 14 C 0.263 3.737 15 H 0.085 0.915 16 C -0.552 4.552 17 H 0.076 0.924 18 C 0.065 3.935 19 N -0.839 5.839 20 Si 0.916 3.084 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.416 3.584 25 F -0.138 7.138 26 F -0.216 7.216 27 F -0.210 7.210 28 C 0.119 3.881 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.397 0.603 33 H 0.398 0.602 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.394 0.606 39 H 0.269 0.731 40 H 0.071 0.929 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.501 -12.560 13.981 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.407 5.407 3 C 0.402 3.598 4 O -0.462 6.462 5 N -0.390 5.390 6 C 0.046 3.954 7 H 0.126 0.874 8 C -0.174 4.174 9 C -0.023 4.023 10 N -0.382 5.382 11 C 0.419 3.581 12 O -0.455 6.455 13 N -0.376 5.376 14 C 0.157 3.843 15 H 0.102 0.898 16 C -0.589 4.589 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.472 5.472 20 Si 0.742 3.258 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.359 3.641 25 F -0.119 7.119 26 F -0.198 7.198 27 F -0.192 7.192 28 C -0.007 4.007 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.230 0.770 33 H 0.232 0.768 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.228 0.772 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.406 -11.406 12.841 20.617 hybrid contribution 1.493 -0.496 0.463 1.640 sum -9.912 -11.903 13.304 20.418 Atomic orbital electron populations 1.21400 0.78059 1.01935 1.02412 1.44912 1.07841 1.07111 1.80873 1.15984 0.81783 0.84353 0.77671 1.90961 1.67746 1.30242 1.57279 1.45033 1.04617 1.09197 1.80126 1.21837 0.92019 0.85868 0.95680 0.87380 1.23051 0.93896 0.99754 1.00733 1.22213 0.98854 0.98266 0.82944 1.47456 1.16577 1.66927 1.07276 1.15566 0.81454 0.78255 0.82808 1.90931 1.67251 1.62663 1.24656 1.45267 1.14210 1.64958 1.13196 1.19607 0.92966 0.85026 0.86747 0.89753 1.20819 0.87454 1.45930 1.04717 0.90593 1.25080 1.00421 0.93938 0.94959 1.70393 1.35019 1.35706 1.06097 0.86269 0.82945 0.78606 0.77977 1.19836 1.20879 1.19832 1.23163 0.72789 0.93817 0.74316 1.93398 1.78195 1.88882 1.51403 1.93078 1.34410 1.97275 1.95033 1.92982 1.92171 1.80321 1.53741 1.22066 0.83365 0.98882 0.96356 0.92239 0.90705 0.92371 0.76977 0.76772 0.89928 0.89144 0.90151 0.91129 0.77246 0.92048 0.91074 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.67 10.70 59.84 0.64 1.31 16 2 N -0.75 -5.32 5.72 -72.07 -0.41 -5.73 16 3 C 0.70 7.58 8.57 -86.92 -0.74 6.84 16 4 O -0.59 -9.06 15.99 5.29 0.08 -8.98 16 5 N -0.73 -6.20 5.11 -56.88 -0.29 -6.49 16 6 C 0.15 1.54 3.31 -66.09 -0.22 1.32 16 7 H 0.11 1.22 7.55 -51.93 -0.39 0.83 16 8 C -0.14 -1.04 6.72 -24.58 -0.17 -1.20 16 9 C 0.10 1.10 6.57 -2.53 -0.02 1.08 16 10 N -0.64 -10.11 3.33 -176.24 -0.59 -10.70 16 11 C 0.72 15.13 8.02 -86.92 -0.70 14.43 16 12 O -0.58 -14.69 15.24 5.29 0.08 -14.61 16 13 N -0.72 -15.27 4.94 -59.81 -0.30 -15.56 16 14 C 0.26 6.66 2.21 -69.08 -0.15 6.51 16 15 H 0.08 2.40 7.58 -51.93 -0.39 2.01 16 16 C -0.55 -14.10 8.46 -34.44 -0.29 -14.39 16 17 H 0.08 1.81 7.74 -52.49 -0.41 1.40 16 18 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 19 N -0.84 -23.16 9.51 55.43 0.53 -22.63 16 20 Si 0.92 20.01 29.54 -169.99 -5.02 14.99 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 C 0.42 10.96 2.81 37.16 0.10 11.06 16 25 F -0.14 -3.88 12.91 2.25 0.03 -3.85 16 26 F -0.22 -5.76 15.68 2.25 0.04 -5.72 16 27 F -0.21 -5.30 16.94 2.25 0.04 -5.26 16 28 C 0.12 1.69 6.63 -3.07 -0.02 1.66 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.40 1.50 8.84 -40.82 -0.36 1.14 16 33 H 0.40 2.13 8.58 -40.82 -0.35 1.78 16 34 H 0.08 0.55 8.01 -51.93 -0.42 0.13 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.81 7.30 -51.93 -0.38 0.43 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.39 7.13 7.02 -40.82 -0.29 6.84 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -35.71 353.22 -7.21 -42.92 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.07 Total: 6.10 kcal Atomic # 6 Polarization: 31.88 SS G_CDS: -1.65 Total: 30.22 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -1.06 Total: -61.11 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.17 Total: -23.59 kcal Atomic # 9 Polarization: -14.95 SS G_CDS: 0.10 Total: -14.84 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.71 -7.21 -42.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434755961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.678 kcal (2) G-P(sol) polarization free energy of solvation -35.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds