Wall clock time and date at job start Sat Apr 11 2020 05:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99710 * 2 1 4 4 O 1.21583 * 120.00460 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99859 * 180.02562 * 3 2 1 6 6 C 1.46504 * 120.00450 * 179.97438 * 5 3 2 7 7 H 1.09001 * 110.63597 * 31.85359 * 6 5 3 8 8 C 1.55154 * 110.72118 * 154.99653 * 6 5 3 9 9 C 1.54910 * 101.57936 * 153.86799 * 8 6 5 10 10 N 1.47430 * 104.83024 * 322.99270 * 9 8 6 11 11 C 1.34784 * 125.64344 * 204.09365 * 10 9 8 12 12 O 1.21587 * 119.99271 * 180.02562 * 11 10 9 13 13 N 1.34770 * 120.00264 * 0.02562 * 11 10 9 14 14 C 1.46500 * 119.99955 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47175 * 324.99716 * 14 13 11 16 16 C 1.50697 * 109.46896 * 204.99514 * 14 13 11 17 17 H 1.07994 * 120.00496 * 0.02562 * 16 14 13 18 18 C 1.37887 * 119.99690 * 179.97438 * 16 14 13 19 19 N 1.31507 * 120.00093 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99676 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47116 * 60.00382 * 20 18 16 22 22 H 1.48503 * 109.46756 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47119 * 300.00049 * 20 18 16 24 24 C 1.53006 * 109.46998 * 84.99585 * 14 13 11 25 25 F 1.39900 * 109.46764 * 179.97438 * 24 14 13 26 26 F 1.39897 * 109.47129 * 299.99840 * 24 14 13 27 27 F 1.39903 * 109.46814 * 60.00332 * 24 14 13 28 28 C 1.47017 * 108.70290 * 24.35563 * 10 9 8 29 29 H 1.09002 * 109.47229 * 60.00097 * 1 2 3 30 30 H 1.09001 * 109.47592 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47382 * 300.00220 * 1 2 3 32 32 H 0.96997 * 119.99945 * 179.97438 * 2 1 3 33 33 H 0.97006 * 119.99645 * 359.97438 * 5 3 2 34 34 H 1.08999 * 111.00439 * 35.79722 * 8 6 5 35 35 H 1.08997 * 111.00402 * 271.94476 * 8 6 5 36 36 H 1.08998 * 110.36904 * 204.15363 * 9 8 6 37 37 H 1.09000 * 110.45945 * 81.87180 * 9 8 6 38 38 H 0.96997 * 119.99935 * 359.97438 * 13 11 10 39 39 H 0.96999 * 120.00118 * 179.97438 * 19 18 16 40 40 H 1.08996 * 109.88085 * 118.13331 * 28 10 9 41 41 H 1.09003 * 109.88103 * 239.29797 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1673 -0.0005 6 6 4.2191 2.4360 -0.0011 7 1 3.6611 3.2021 0.5373 8 6 5.6328 2.2539 0.6118 9 6 6.4194 3.3980 -0.0754 10 7 5.8807 3.4557 -1.4465 11 6 6.5253 3.9466 -2.5236 12 8 5.9813 3.9441 -3.6110 13 7 7.7728 4.4402 -2.3954 14 6 8.4732 4.9743 -3.5660 15 1 8.2023 4.3935 -4.4477 16 6 9.9612 4.8866 -3.3443 17 1 10.3467 4.4740 -2.4238 18 6 10.8306 5.3323 -4.3174 19 7 10.3613 5.8334 -5.4390 20 14 12.6751 5.2230 -4.0429 21 1 13.0619 3.8038 -3.8389 22 1 13.3850 5.7634 -5.2300 23 1 13.0445 6.0143 -2.8418 24 6 8.0741 6.4364 -3.7760 25 9 8.7434 6.9465 -4.8936 26 9 6.6927 6.5177 -3.9818 27 9 8.4218 7.1818 -2.6443 28 6 4.5217 2.8949 -1.4431 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.9499 -0.8400 0.0004 33 1 3.9716 0.3272 -0.0005 34 1 6.0497 1.2813 0.3503 35 1 5.6103 2.3897 1.6930 36 1 7.4845 3.1673 -0.0956 37 1 6.2462 4.3426 0.4402 38 1 8.2067 4.4425 -1.5278 39 1 10.9728 6.1473 -6.1233 40 1 3.8054 3.6572 -1.7497 41 1 4.4710 2.0420 -2.1199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434755961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:01 Heat of formation + Delta-G solvation = -209.451327 kcal Electronic energy + Delta-G solvation = -30534.087076 eV Core-core repulsion = 25648.123627 eV Total energy + Delta-G solvation = -4885.963450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.41645 -48.05384 -47.72649 -41.53508 -40.80900 -38.76322 -36.49250 -35.56651 -35.35130 -34.39979 -31.81912 -30.34514 -29.27591 -27.18819 -26.56657 -24.76635 -23.25040 -22.33666 -21.86482 -21.10564 -19.90103 -19.56107 -18.88377 -18.75568 -18.60303 -17.83165 -17.66062 -16.97930 -16.67826 -16.43218 -16.40947 -15.64422 -15.45303 -15.14253 -15.03673 -14.95384 -14.53532 -14.46934 -14.45327 -14.29526 -14.11137 -14.03186 -13.93967 -13.79428 -13.46973 -13.05899 -13.00653 -12.84538 -12.74222 -12.67142 -12.58702 -12.20760 -11.84381 -11.59745 -11.43806 -11.30223 -10.66829 -10.45319 -10.21696 -9.85945 -9.54086 -8.19761 -6.51356 1.38030 1.49249 1.51353 1.60103 1.84298 2.07613 2.11562 2.38037 2.55050 2.95371 3.04152 3.33345 3.50459 3.58551 3.78658 3.87350 4.07509 4.16919 4.21002 4.33690 4.47293 4.63224 4.68182 4.72823 4.77173 4.85428 4.98539 4.99645 5.09402 5.29604 5.41619 5.46964 5.50525 5.56624 5.65475 5.99526 6.07214 6.53701 7.02760 7.09748 7.19009 7.57147 7.58652 8.73188 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.002678 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.320896 B =10453.841126 C =10966.426587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.737 5.737 3 C 0.694 3.306 4 O -0.638 6.638 5 N -0.719 5.719 6 C 0.164 3.836 7 H 0.098 0.902 8 C -0.113 4.113 9 C 0.088 3.912 10 N -0.635 5.635 11 C 0.710 3.290 12 O -0.632 6.632 13 N -0.714 5.714 14 C 0.271 3.729 15 H 0.044 0.956 16 C -0.560 4.560 17 H 0.095 0.905 18 C 0.013 3.987 19 N -0.876 5.876 20 Si 0.987 3.013 21 H -0.260 1.260 22 H -0.286 1.286 23 H -0.264 1.264 24 C 0.411 3.589 25 F -0.150 7.150 26 F -0.222 7.222 27 F -0.203 7.203 28 C 0.116 3.884 29 H 0.040 0.960 30 H 0.114 0.886 31 H 0.049 0.951 32 H 0.416 0.584 33 H 0.417 0.583 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.410 0.590 39 H 0.269 0.731 40 H 0.038 0.962 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 -14.667 16.916 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.393 5.393 3 C 0.394 3.606 4 O -0.519 6.519 5 N -0.375 5.375 6 C 0.057 3.943 7 H 0.116 0.884 8 C -0.151 4.151 9 C -0.034 4.034 10 N -0.373 5.373 11 C 0.412 3.588 12 O -0.513 6.513 13 N -0.369 5.369 14 C 0.163 3.837 15 H 0.062 0.938 16 C -0.597 4.597 17 H 0.113 0.887 18 C -0.192 4.192 19 N -0.510 5.510 20 Si 0.810 3.190 21 H -0.185 1.185 22 H -0.212 1.212 23 H -0.189 1.189 24 C 0.355 3.645 25 F -0.131 7.131 26 F -0.204 7.204 27 F -0.184 7.184 28 C -0.009 4.009 29 H 0.059 0.941 30 H 0.132 0.868 31 H 0.067 0.933 32 H 0.253 0.747 33 H 0.255 0.745 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.247 0.753 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.066 -13.608 15.873 23.205 hybrid contribution 0.962 0.137 -0.449 1.071 sum -9.103 -13.471 15.423 22.410 Atomic orbital electron populations 1.21531 0.77464 1.04085 1.01093 1.44826 1.08259 1.06848 1.79344 1.16297 0.82340 0.84557 0.77441 1.90931 1.68915 1.32421 1.59663 1.44806 1.03944 1.09498 1.79262 1.21622 0.93730 0.86419 0.92561 0.88403 1.23045 0.90670 0.99307 1.02104 1.22660 1.00122 1.00475 0.80136 1.47413 1.16844 1.65059 1.08030 1.15773 0.81345 0.78315 0.83387 1.90886 1.68353 1.64667 1.27347 1.44950 1.14312 1.64831 1.12766 1.19199 0.93698 0.83875 0.86881 0.93816 1.21178 0.87314 1.45716 1.05453 0.88682 1.26051 1.05323 0.93316 0.94502 1.70536 1.36631 1.36763 1.07090 0.85165 0.76838 0.79191 0.77846 1.18481 1.21191 1.18873 1.23409 0.72427 0.94540 0.74147 1.93373 1.78446 1.89134 1.52194 1.93065 1.34879 1.97334 1.95088 1.92980 1.92083 1.80206 1.53173 1.22179 0.81891 0.97506 0.99344 0.94073 0.86779 0.93269 0.74723 0.74537 0.87938 0.85659 0.88725 0.90036 0.75315 0.92149 0.94345 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.15 10.70 127.77 1.37 2.52 16 2 N -0.74 -9.08 5.72 -500.19 -2.86 -11.94 16 3 C 0.69 14.31 8.57 179.05 1.53 15.84 16 4 O -0.64 -20.08 15.99 -3.98 -0.06 -20.14 16 5 N -0.72 -10.66 5.11 -452.14 -2.31 -12.97 16 6 C 0.16 3.05 3.31 46.18 0.15 3.20 16 7 H 0.10 2.12 7.55 -2.39 -0.02 2.10 16 8 C -0.11 -1.28 6.72 31.99 0.21 -1.06 16 9 C 0.09 1.67 6.57 86.85 0.57 2.24 16 10 N -0.63 -19.76 3.33 -829.75 -2.76 -22.52 16 11 C 0.71 30.52 8.02 179.05 1.44 31.96 16 12 O -0.63 -33.63 15.24 -3.99 -0.06 -33.69 16 13 N -0.71 -30.14 4.94 -461.41 -2.28 -32.42 16 14 C 0.27 14.02 2.21 44.25 0.10 14.12 16 15 H 0.04 2.63 7.58 -2.39 -0.02 2.61 16 16 C -0.56 -28.27 8.46 25.60 0.22 -28.06 16 17 H 0.10 4.33 7.74 -2.91 -0.02 4.31 16 18 C 0.01 0.69 5.20 84.66 0.44 1.13 16 19 N -0.88 -49.12 9.51 21.45 0.20 -48.92 16 20 Si 0.99 40.12 29.54 68.60 2.03 42.14 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 22 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 24 C 0.41 22.15 2.81 71.98 0.20 22.36 16 25 F -0.15 -8.71 12.91 44.97 0.58 -8.13 16 26 F -0.22 -12.23 15.68 44.97 0.70 -11.52 16 27 F -0.20 -10.20 16.94 44.97 0.76 -9.44 16 28 C 0.12 3.34 6.63 86.73 0.58 3.92 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.42 1.92 8.84 -92.71 -0.82 1.10 16 33 H 0.42 3.08 8.58 -92.70 -0.80 2.28 16 34 H 0.10 0.84 8.01 -2.39 -0.02 0.82 16 35 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 1.57 7.30 -2.39 -0.02 1.56 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.41 14.25 7.02 -92.71 -0.65 13.60 16 39 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.75 8.03 -2.39 -0.02 1.73 16 Total: -1.00 -82.22 353.22 -0.40 -82.62 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -1.15 Total: 18.79 kcal Atomic # 6 Polarization: 61.35 SS G_CDS: 6.81 Total: 68.16 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -10.01 Total: -128.77 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -0.12 Total: -53.84 kcal Atomic # 9 Polarization: -31.14 SS G_CDS: 2.05 Total: -29.10 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Total: -82.22 -0.40 -82.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434755961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.831 kcal (2) G-P(sol) polarization free energy of solvation -82.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds