Wall clock time and date at job start Sat Apr 11 2020 05:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99647 * 2 1 4 4 O 1.21552 * 120.00463 * 0.02562 * 3 2 1 5 5 C 1.47852 * 119.99833 * 179.97438 * 3 2 1 6 6 C 1.39600 * 120.14420 * 359.97438 * 5 3 2 7 7 C 1.37933 * 119.85454 * 180.02562 * 6 5 3 8 8 C 1.38383 * 120.14299 * 359.72181 * 7 6 5 9 9 C 1.38342 * 120.29385 * 0.55477 * 8 7 6 10 10 C 1.50700 * 119.92869 * 179.72438 * 9 8 7 11 11 N 1.46497 * 109.46932 * 269.72291 * 10 9 8 12 12 C 1.34774 * 120.00234 * 179.97438 * 11 10 9 13 13 O 1.21618 * 119.99610 * 359.97438 * 12 11 10 14 14 C 1.47428 * 120.00477 * 180.02562 * 12 11 10 15 15 C 1.39232 * 120.28208 * 357.04743 * 14 12 11 16 16 C 1.38215 * 120.09251 * 180.27997 * 15 14 12 17 17 C 1.38828 * 120.67982 * 359.72196 * 16 15 14 18 18 C 1.37601 * 120.56733 * 359.97438 * 17 16 15 19 19 C 1.40710 * 119.87923 * 0.02562 * 18 17 16 20 20 C 1.40893 * 120.32484 * 179.97438 * 19 18 17 21 21 H 1.08007 * 119.99693 * 145.84936 * 20 19 18 22 22 C 1.40270 * 120.00340 * 325.85599 * 20 19 18 23 23 N 1.30628 * 119.99792 * 340.93931 * 22 20 19 24 24 Si 1.86802 * 120.00322 * 160.94274 * 22 20 19 25 25 H 1.48497 * 109.46888 * 269.99951 * 24 22 20 26 26 H 1.48499 * 109.46819 * 29.99664 * 24 22 20 27 27 H 1.48498 * 109.47235 * 149.99593 * 24 22 20 28 28 C 1.37975 * 120.14116 * 359.44226 * 9 8 7 29 29 H 1.08995 * 109.47252 * 59.99651 * 1 2 3 30 30 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46909 * 299.99931 * 1 2 3 32 32 H 0.96997 * 120.00193 * 180.02562 * 2 1 3 33 33 H 1.08003 * 120.07065 * 359.97438 * 6 5 3 34 34 H 1.07998 * 119.92691 * 179.97438 * 7 6 5 35 35 H 1.07996 * 119.85408 * 180.29665 * 8 7 6 36 36 H 1.08997 * 109.47118 * 149.72257 * 10 9 8 37 37 H 1.09003 * 109.46911 * 29.71952 * 10 9 8 38 38 H 0.97004 * 120.00040 * 0.02562 * 11 10 9 39 39 H 1.08001 * 119.94888 * 0.02562 * 15 14 12 40 40 H 1.07997 * 119.66332 * 179.73917 * 16 15 14 41 41 H 1.07994 * 119.72068 * 180.02562 * 17 16 15 42 42 H 1.07999 * 120.05974 * 180.02562 * 18 17 16 43 43 H 0.96993 * 120.00143 * 354.75992 * 23 22 20 44 44 H 1.08005 * 120.07154 * 180.25262 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6173 1.1673 0.0006 6 6 4.3184 -0.0399 0.0017 7 6 5.6977 -0.0329 0.0027 8 6 6.3865 1.1673 -0.0031 9 6 5.6979 2.3672 0.0016 10 6 6.4564 3.6694 0.0015 11 7 6.7011 4.0920 1.3826 12 6 7.3682 5.2369 1.6289 13 8 7.7675 5.9188 0.7045 14 6 7.6150 5.6620 3.0188 15 6 7.1087 4.9177 4.0810 16 6 7.3376 5.3230 5.3825 17 6 8.0761 6.4681 5.6483 18 6 8.5946 7.2209 4.6197 19 6 8.3760 6.8300 3.2858 20 6 8.9021 7.5941 2.2253 21 1 9.2353 7.1058 1.3214 22 6 8.9933 8.9888 2.3436 23 7 8.2761 9.6168 3.2366 24 14 10.1403 9.9482 1.2239 25 1 11.4776 10.0558 1.8604 26 1 10.2663 9.2431 -0.0769 27 1 9.5886 11.3083 0.9983 28 6 4.3182 2.3741 0.0004 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 3.7819 -0.9773 0.0025 34 1 6.2413 -0.9661 0.0040 35 1 7.4665 1.1673 -0.0071 36 1 5.8706 4.4310 -0.5132 37 1 7.4087 3.5351 -0.5116 38 1 6.3836 3.5475 2.1200 39 1 6.5329 4.0247 3.8876 40 1 6.9380 4.7428 6.2010 41 1 8.2458 6.7703 6.6711 42 1 9.1682 8.1100 4.8359 43 1 7.6252 9.1298 3.7658 44 1 3.7817 3.3115 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464493811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:13 Heat of formation + Delta-G solvation = -31.621643 kcal Electronic energy + Delta-G solvation = -27493.582596 eV Core-core repulsion = 23568.036424 eV Total energy + Delta-G solvation = -3925.546172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.51400 -39.20582 -38.52648 -36.95303 -35.06724 -34.48820 -33.82985 -31.69178 -31.36942 -29.91973 -29.30998 -27.40904 -26.17919 -24.98191 -23.61641 -22.46234 -21.85854 -20.91759 -20.49126 -19.52721 -18.42677 -17.92110 -16.56193 -16.44263 -16.29025 -15.55686 -15.33693 -15.23079 -14.85254 -14.59757 -14.18880 -14.02937 -13.98684 -13.85346 -13.59439 -13.43691 -13.02275 -12.72996 -12.62994 -12.51285 -12.30326 -12.13031 -11.86806 -11.64589 -11.28084 -11.12584 -10.89324 -10.73912 -10.36111 -10.26847 -10.15613 -9.64099 -9.56559 -9.24505 -9.19793 -9.06741 -8.48243 -8.41457 -7.78305 -7.59821 -7.13063 -4.45306 0.55664 1.02186 2.24550 2.57041 2.74438 2.82277 3.21168 3.32237 3.43072 3.50413 4.04986 4.07159 4.11585 4.33125 4.41850 4.58275 4.65621 4.78387 4.82186 5.03624 5.13155 5.13419 5.35957 5.44940 5.47629 5.57508 5.77086 5.81618 5.88798 5.95241 6.01523 6.04680 6.08277 6.19185 6.35890 6.50671 6.57818 6.72558 6.99391 7.05715 7.08329 7.28714 7.50223 7.61681 7.73157 7.87645 7.89728 8.09931 8.22236 8.36094 8.74011 8.87224 9.34401 10.05657 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.002445 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.747947 B =11447.575340 C =11862.470039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.734 5.734 3 C 0.558 3.442 4 O -0.531 6.531 5 C -0.141 4.141 6 C -0.085 4.085 7 C -0.129 4.129 8 C -0.074 4.074 9 C -0.104 4.104 10 C 0.164 3.836 11 N -0.745 5.745 12 C 0.564 3.436 13 O -0.536 6.536 14 C -0.265 4.265 15 C -0.042 4.042 16 C -0.259 4.259 17 C -0.076 4.076 18 C -0.201 4.201 19 C 0.120 3.880 20 C -0.466 4.466 21 H 0.106 0.894 22 C 0.030 3.970 23 N -0.794 5.794 24 Si 1.073 2.927 25 H -0.275 1.275 26 H -0.273 1.273 27 H -0.276 1.276 28 C -0.040 4.040 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.401 0.599 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.392 0.608 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.299 0.701 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.352 -20.850 -5.566 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.387 5.387 3 C 0.346 3.654 4 O -0.408 6.408 5 C -0.145 4.145 6 C -0.104 4.104 7 C -0.147 4.147 8 C -0.092 4.092 9 C -0.104 4.104 10 C 0.040 3.960 11 N -0.401 5.401 12 C 0.358 3.642 13 O -0.414 6.414 14 C -0.270 4.270 15 C -0.061 4.061 16 C -0.279 4.279 17 C -0.094 4.094 18 C -0.220 4.220 19 C 0.116 3.884 20 C -0.493 4.493 21 H 0.124 0.876 22 C -0.191 4.191 23 N -0.417 5.417 24 Si 0.896 3.104 25 H -0.201 1.201 26 H -0.197 1.197 27 H -0.201 1.201 28 C -0.060 4.060 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.236 0.764 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.227 0.773 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.993 -18.011 -6.549 20.764 hybrid contribution -0.758 -2.479 0.917 2.749 sum -8.750 -20.489 -5.632 22.981 Atomic orbital electron populations 1.21561 0.79151 1.02291 1.02642 1.45698 1.07919 1.08584 1.76472 1.18351 0.87342 0.83720 0.76024 1.90808 1.69910 1.31109 1.48964 1.19854 0.92470 0.94530 1.07597 1.21252 0.94705 0.96576 0.97894 1.21089 0.93851 0.98369 1.01360 1.21401 1.00663 0.91663 0.95502 1.20051 0.93457 0.95555 1.01339 1.20022 0.98941 0.91389 0.85603 1.46062 1.61525 1.25920 1.06555 1.18393 0.76696 0.79174 0.89908 1.90686 1.51374 1.53016 1.46352 1.19362 1.12353 1.05056 0.90197 1.20716 0.96130 0.96269 0.93029 1.20240 1.11086 1.01389 0.95173 1.20745 0.96669 0.94763 0.97268 1.21256 1.05891 1.02261 0.92583 1.17512 0.87715 0.90698 0.92505 1.21217 1.31397 0.93665 1.02974 0.87612 1.27276 0.97886 0.96423 0.97546 1.70355 1.14478 1.41907 1.14968 0.83518 0.75369 0.75698 0.75779 1.20071 1.19734 1.20149 1.21276 0.93285 0.97979 0.93421 0.92032 0.90544 0.91987 0.76445 0.85801 0.85162 0.85067 0.90965 0.90944 0.77319 0.89171 0.88918 0.88878 0.87514 0.88746 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.70 59.85 0.64 1.19 16 2 N -0.73 -5.57 5.66 -68.04 -0.39 -5.95 16 3 C 0.56 6.52 7.77 -12.33 -0.10 6.42 16 4 O -0.53 -8.43 16.35 5.32 0.09 -8.34 16 5 C -0.14 -1.53 5.87 -104.96 -0.62 -2.14 16 6 C -0.09 -0.66 9.54 -39.19 -0.37 -1.04 16 7 C -0.13 -1.01 10.03 -39.64 -0.40 -1.41 16 8 C -0.07 -0.72 9.69 -39.49 -0.38 -1.10 16 9 C -0.10 -1.25 5.24 -104.68 -0.55 -1.80 16 10 C 0.16 2.47 5.80 -5.20 -0.03 2.44 16 11 N -0.75 -13.23 5.50 -62.56 -0.34 -13.57 16 12 C 0.56 13.08 7.73 -12.52 -0.10 12.98 16 13 O -0.54 -14.16 13.55 5.26 0.07 -14.09 16 14 C -0.26 -6.48 5.92 -104.37 -0.62 -7.09 16 15 C -0.04 -0.91 9.53 -39.22 -0.37 -1.28 16 16 C -0.26 -5.50 10.03 -39.37 -0.39 -5.89 16 17 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 18 C -0.20 -5.03 7.86 -38.88 -0.31 -5.34 16 19 C 0.12 3.22 5.18 -106.54 -0.55 2.67 16 20 C -0.47 -12.86 7.66 -37.81 -0.29 -13.15 16 21 H 0.11 3.05 5.91 -52.48 -0.31 2.73 16 22 C 0.03 0.79 5.04 -17.30 -0.09 0.71 16 23 N -0.79 -21.47 12.57 55.56 0.70 -20.78 16 24 Si 1.07 22.76 29.98 -169.99 -5.10 17.66 16 25 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 28 C -0.04 -0.50 9.24 -39.19 -0.36 -0.87 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.40 1.75 6.86 -40.82 -0.28 1.47 16 33 H 0.12 0.53 6.41 -52.48 -0.34 0.20 16 34 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 37 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 38 H 0.39 6.22 6.50 -40.82 -0.27 5.95 16 39 H 0.09 1.61 6.41 -52.49 -0.34 1.27 16 40 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.11 2.73 6.93 -52.49 -0.36 2.36 16 43 H 0.30 8.28 6.54 -40.82 -0.27 8.01 16 44 H 0.14 1.93 7.65 -52.48 -0.40 1.53 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -33.73 373.82 -9.77 -43.51 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -5.16 Total: 12.71 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -5.28 Total: -16.78 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -0.03 Total: -40.30 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.16 Total: -22.43 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.10 Total: 17.66 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.73 -9.77 -43.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464493811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.883 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds