Wall clock time and date at job start Sat Apr 11 2020 05:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99647 * 2 1 4 4 O 1.21552 * 120.00463 * 0.02562 * 3 2 1 5 5 C 1.47852 * 119.99833 * 179.97438 * 3 2 1 6 6 C 1.39600 * 120.14420 * 359.97438 * 5 3 2 7 7 C 1.37933 * 119.85454 * 180.02562 * 6 5 3 8 8 C 1.38383 * 120.14299 * 359.72181 * 7 6 5 9 9 C 1.38342 * 120.29385 * 0.55477 * 8 7 6 10 10 C 1.50700 * 119.92869 * 179.72438 * 9 8 7 11 11 N 1.46497 * 109.46932 * 269.72291 * 10 9 8 12 12 C 1.34774 * 120.00234 * 179.97438 * 11 10 9 13 13 O 1.21618 * 119.99610 * 359.97438 * 12 11 10 14 14 C 1.47428 * 120.00477 * 180.02562 * 12 11 10 15 15 C 1.39232 * 120.28208 * 357.04743 * 14 12 11 16 16 C 1.38215 * 120.09251 * 180.27997 * 15 14 12 17 17 C 1.38828 * 120.67982 * 359.72196 * 16 15 14 18 18 C 1.37601 * 120.56733 * 359.97438 * 17 16 15 19 19 C 1.40710 * 119.87923 * 0.02562 * 18 17 16 20 20 C 1.40893 * 120.32484 * 179.97438 * 19 18 17 21 21 H 1.08007 * 119.99693 * 145.84936 * 20 19 18 22 22 C 1.40270 * 120.00340 * 325.85599 * 20 19 18 23 23 N 1.30628 * 119.99792 * 340.93931 * 22 20 19 24 24 Si 1.86802 * 120.00322 * 160.94274 * 22 20 19 25 25 H 1.48497 * 109.46888 * 269.99951 * 24 22 20 26 26 H 1.48499 * 109.46819 * 29.99664 * 24 22 20 27 27 H 1.48498 * 109.47235 * 149.99593 * 24 22 20 28 28 C 1.37975 * 120.14116 * 359.44226 * 9 8 7 29 29 H 1.08995 * 109.47252 * 59.99651 * 1 2 3 30 30 H 1.09000 * 109.47187 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46909 * 299.99931 * 1 2 3 32 32 H 0.96997 * 120.00193 * 180.02562 * 2 1 3 33 33 H 1.08003 * 120.07065 * 359.97438 * 6 5 3 34 34 H 1.07998 * 119.92691 * 179.97438 * 7 6 5 35 35 H 1.07996 * 119.85408 * 180.29665 * 8 7 6 36 36 H 1.08997 * 109.47118 * 149.72257 * 10 9 8 37 37 H 1.09003 * 109.46911 * 29.71952 * 10 9 8 38 38 H 0.97004 * 120.00040 * 0.02562 * 11 10 9 39 39 H 1.08001 * 119.94888 * 0.02562 * 15 14 12 40 40 H 1.07997 * 119.66332 * 179.73917 * 16 15 14 41 41 H 1.07994 * 119.72068 * 180.02562 * 17 16 15 42 42 H 1.07999 * 120.05974 * 180.02562 * 18 17 16 43 43 H 0.96993 * 120.00143 * 354.75992 * 23 22 20 44 44 H 1.08005 * 120.07154 * 180.25262 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6173 1.1673 0.0006 6 6 4.3184 -0.0399 0.0017 7 6 5.6977 -0.0329 0.0027 8 6 6.3865 1.1673 -0.0031 9 6 5.6979 2.3672 0.0016 10 6 6.4564 3.6694 0.0015 11 7 6.7011 4.0920 1.3826 12 6 7.3682 5.2369 1.6289 13 8 7.7675 5.9188 0.7045 14 6 7.6150 5.6620 3.0188 15 6 7.1087 4.9177 4.0810 16 6 7.3376 5.3230 5.3825 17 6 8.0761 6.4681 5.6483 18 6 8.5946 7.2209 4.6197 19 6 8.3760 6.8300 3.2858 20 6 8.9021 7.5941 2.2253 21 1 9.2353 7.1058 1.3214 22 6 8.9933 8.9888 2.3436 23 7 8.2761 9.6168 3.2366 24 14 10.1403 9.9482 1.2239 25 1 11.4776 10.0558 1.8604 26 1 10.2663 9.2431 -0.0769 27 1 9.5886 11.3083 0.9983 28 6 4.3182 2.3741 0.0004 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 3.7819 -0.9773 0.0025 34 1 6.2413 -0.9661 0.0040 35 1 7.4665 1.1673 -0.0071 36 1 5.8706 4.4310 -0.5132 37 1 7.4087 3.5351 -0.5116 38 1 6.3836 3.5475 2.1200 39 1 6.5329 4.0247 3.8876 40 1 6.9380 4.7428 6.2010 41 1 8.2458 6.7703 6.6711 42 1 9.1682 8.1100 4.8359 43 1 7.6252 9.1298 3.7658 44 1 3.7817 3.3115 -0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464493811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:12 Heat of formation + Delta-G solvation = -54.450274 kcal Electronic energy + Delta-G solvation = -27494.572520 eV Core-core repulsion = 23568.036424 eV Total energy + Delta-G solvation = -3926.536096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39766 -40.80700 -39.61072 -38.71733 -36.18551 -35.83931 -35.50194 -32.89392 -32.23721 -31.64302 -31.09702 -28.19807 -27.50715 -26.66834 -24.44092 -24.03662 -22.95771 -22.63019 -21.41503 -21.22988 -20.02531 -19.09241 -18.04679 -17.39095 -17.08016 -16.94604 -16.54698 -16.33323 -16.30146 -15.94779 -15.79681 -15.55188 -15.37485 -15.22740 -14.74399 -14.47384 -14.15660 -14.04006 -13.91176 -13.85078 -13.47111 -13.35050 -13.12911 -12.91983 -12.72016 -12.66629 -12.50598 -12.13486 -12.06634 -11.95595 -11.47594 -11.19059 -10.97243 -10.51098 -10.33157 -10.07464 -9.96215 -9.89200 -9.62797 -9.50908 -9.11062 -6.47495 -0.23898 0.21169 0.38035 0.89011 1.45543 1.61704 1.72025 1.76634 2.13917 2.22641 2.30483 2.42536 2.73119 2.89733 3.51283 3.54349 3.63689 3.84580 4.04753 4.18531 4.21824 4.22858 4.26008 4.40413 4.42898 4.58537 4.59004 4.62906 4.79019 4.81784 4.86531 4.92597 4.93615 5.12315 5.21363 5.30680 5.33906 5.41412 5.48332 5.50055 5.63966 5.69497 5.82108 5.87877 5.95303 6.18910 6.32026 6.44967 6.65467 6.83359 6.90314 7.12616 7.56055 8.03303 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.002445 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.747947 B =11447.575340 C =11862.470039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.714 5.714 3 C 0.551 3.449 4 O -0.587 6.587 5 C -0.153 4.153 6 C -0.064 4.064 7 C -0.116 4.116 8 C -0.072 4.072 9 C -0.114 4.114 10 C 0.166 3.834 11 N -0.723 5.723 12 C 0.558 3.442 13 O -0.578 6.578 14 C -0.283 4.283 15 C -0.042 4.042 16 C -0.244 4.244 17 C -0.071 4.071 18 C -0.224 4.224 19 C 0.095 3.905 20 C -0.509 4.509 21 H 0.082 0.918 22 C -0.005 4.005 23 N -0.818 5.818 24 Si 1.118 2.882 25 H -0.253 1.253 26 H -0.274 1.274 27 H -0.268 1.268 28 C -0.060 4.060 29 H 0.049 0.951 30 H 0.119 0.881 31 H 0.048 0.952 32 H 0.420 0.580 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.143 0.857 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.404 0.596 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.090 0.910 43 H 0.282 0.718 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.864 -25.736 -4.563 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C 0.339 3.661 4 O -0.469 6.469 5 C -0.156 4.156 6 C -0.083 4.083 7 C -0.134 4.134 8 C -0.091 4.091 9 C -0.115 4.115 10 C 0.043 3.957 11 N -0.378 5.378 12 C 0.351 3.649 13 O -0.459 6.459 14 C -0.288 4.288 15 C -0.060 4.060 16 C -0.263 4.263 17 C -0.090 4.090 18 C -0.244 4.244 19 C 0.091 3.909 20 C -0.537 4.537 21 H 0.100 0.900 22 C -0.220 4.220 23 N -0.442 5.442 24 Si 0.936 3.064 25 H -0.178 1.178 26 H -0.199 1.199 27 H -0.193 1.193 28 C -0.080 4.080 29 H 0.068 0.932 30 H 0.137 0.863 31 H 0.067 0.933 32 H 0.258 0.742 33 H 0.186 0.814 34 H 0.188 0.812 35 H 0.161 0.839 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.241 0.759 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.144 0.856 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.529 -23.008 -5.519 25.151 hybrid contribution -0.775 -1.323 0.694 1.683 sum -9.304 -24.331 -4.825 26.492 Atomic orbital electron populations 1.21735 0.78237 1.04692 1.01480 1.45598 1.08572 1.08159 1.74291 1.18628 0.87859 0.84030 0.75568 1.90782 1.70937 1.33272 1.51897 1.19882 0.92143 0.95070 1.08493 1.21708 0.94967 0.96820 0.94788 1.21523 0.93882 0.98890 0.99069 1.21610 1.01404 0.91437 0.94627 1.19667 0.92903 0.94786 1.04100 1.20050 0.99168 0.92854 0.83630 1.45825 1.59424 1.24130 1.08380 1.18448 0.76966 0.80184 0.89262 1.90664 1.53215 1.54725 1.47324 1.19775 1.12107 1.04897 0.91997 1.21124 0.95498 0.97045 0.92379 1.20803 1.08747 1.00475 0.96264 1.21163 0.95343 0.94390 0.98106 1.21216 1.07433 1.02815 0.92911 1.17917 0.88025 0.91748 0.93228 1.21135 1.35005 0.94636 1.02894 0.90034 1.28509 0.98281 0.97071 0.98105 1.70467 1.15644 1.41302 1.16789 0.82982 0.74690 0.74620 0.74125 1.17754 1.19933 1.19293 1.21101 0.93564 0.97949 0.95389 0.93183 0.86276 0.93298 0.74187 0.81399 0.81169 0.83884 0.93001 0.90857 0.75899 0.85148 0.84590 0.85639 0.89141 0.90516 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.70 127.77 1.37 2.23 16 2 N -0.71 -8.89 5.66 -487.47 -2.76 -11.65 16 3 C 0.55 12.41 7.77 86.79 0.67 13.08 16 4 O -0.59 -19.42 16.35 -3.88 -0.06 -19.48 16 5 C -0.15 -3.05 5.87 -20.09 -0.12 -3.17 16 6 C -0.06 -0.70 9.54 22.53 0.21 -0.49 16 7 C -0.12 -1.23 10.03 22.23 0.22 -1.00 16 8 C -0.07 -1.20 9.69 22.33 0.22 -0.99 16 9 C -0.11 -2.69 5.24 -19.90 -0.10 -2.80 16 10 C 0.17 5.18 5.80 85.63 0.50 5.67 16 11 N -0.72 -25.97 5.50 -470.10 -2.58 -28.55 16 12 C 0.56 26.85 7.73 86.66 0.67 27.52 16 13 O -0.58 -32.52 13.55 -4.09 -0.06 -32.57 16 14 C -0.28 -14.08 5.92 -19.70 -0.12 -14.20 16 15 C -0.04 -1.70 9.53 22.50 0.21 -1.48 16 16 C -0.24 -9.48 10.03 22.41 0.22 -9.26 16 17 C -0.07 -3.06 10.01 22.26 0.22 -2.84 16 18 C -0.22 -11.56 7.86 22.72 0.18 -11.38 16 19 C 0.09 5.30 5.18 -21.11 -0.11 5.19 16 20 C -0.51 -30.01 7.66 23.41 0.18 -29.83 16 21 H 0.08 5.08 5.91 -2.91 -0.02 5.07 16 22 C 0.00 -0.25 5.04 85.37 0.43 0.18 16 23 N -0.82 -46.76 12.57 21.88 0.27 -46.48 16 24 Si 1.12 48.19 29.98 68.60 2.06 50.25 16 25 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 C -0.06 -1.54 9.24 22.53 0.21 -1.33 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.42 1.73 6.86 -92.71 -0.64 1.09 16 33 H 0.17 0.32 6.41 -2.91 -0.02 0.30 16 34 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 35 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 37 H 0.07 2.27 8.08 -2.39 -0.02 2.25 16 38 H 0.40 12.33 6.50 -92.71 -0.60 11.72 16 39 H 0.13 4.17 6.41 -2.91 -0.02 4.15 16 40 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.09 4.86 6.93 -2.91 -0.02 4.84 16 43 H 0.28 16.66 6.54 -92.71 -0.61 16.06 16 44 H 0.11 3.34 7.65 -2.91 -0.02 3.32 16 Total: -1.00 -82.48 373.82 1.93 -80.55 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -0.01 Total: 32.80 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 5.07 Total: -24.87 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -5.07 Total: -86.68 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -0.12 Total: -52.05 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.06 Total: 50.25 kcal Total: -82.48 1.93 -80.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464493811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.101 kcal (2) G-P(sol) polarization free energy of solvation -82.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds