Wall clock time and date at job start Sat Apr 11 2020 05:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21276 * 120.00150 * 2 1 4 4 N 1.34779 * 119.99854 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99964 * 180.02562 * 4 2 1 6 6 C 1.50698 * 109.46756 * 180.02562 * 5 4 2 7 7 C 1.38405 * 119.92143 * 269.97026 * 6 5 4 8 8 C 1.38353 * 120.30821 * 180.02562 * 7 6 5 9 9 C 1.37963 * 120.15334 * 359.72825 * 8 7 6 10 10 C 1.39639 * 119.83896 * 0.57407 * 9 8 7 11 11 C 1.47694 * 120.15076 * 179.69703 * 10 9 8 12 12 O 1.21581 * 120.00305 * 207.81422 * 11 10 9 13 13 N 1.34776 * 119.99610 * 27.82044 * 11 10 9 14 14 C 1.36925 * 119.99715 * 182.31016 * 13 11 10 15 15 H 1.08006 * 119.99417 * 223.47720 * 14 13 11 16 16 C 1.38975 * 120.00588 * 43.47241 * 14 13 11 17 17 N 1.31370 * 119.99761 * 24.82650 * 16 14 13 18 18 Si 1.86803 * 120.00067 * 204.83329 * 16 14 13 19 19 H 1.48498 * 109.47198 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47100 * 119.99939 * 18 16 14 21 21 H 1.48506 * 109.46732 * 239.99641 * 18 16 14 22 22 C 1.39710 * 120.00431 * 2.30102 * 13 11 10 23 23 C 1.38979 * 120.08034 * 228.08162 * 22 13 11 24 24 C 1.38075 * 119.91670 * 179.70051 * 23 22 13 25 25 C 1.38318 * 120.08380 * 0.27464 * 24 23 22 26 26 C 1.38313 * 120.15500 * 0.02562 * 25 24 23 27 27 C 1.38080 * 120.08116 * 0.02562 * 26 25 24 28 28 C 1.37910 * 119.92618 * 90.00327 * 6 5 4 29 29 H 1.09000 * 109.47228 * 240.00082 * 1 2 3 30 30 H 1.09002 * 109.46732 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.46928 * 120.00034 * 1 2 3 32 32 H 0.97001 * 119.99891 * 0.02562 * 4 2 1 33 33 H 1.08999 * 109.46982 * 60.00257 * 5 4 2 34 34 H 1.09000 * 109.47064 * 300.00277 * 5 4 2 35 35 H 1.08000 * 119.84849 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.92606 * 180.02562 * 8 7 6 37 37 H 1.07993 * 120.08014 * 180.29876 * 9 8 7 38 38 H 0.97001 * 120.00521 * 184.91502 * 17 16 14 39 39 H 1.07992 * 120.04038 * 359.97438 * 23 22 13 40 40 H 1.08007 * 119.95961 * 180.25283 * 24 23 22 41 41 H 1.07994 * 119.92201 * 180.02562 * 25 24 23 42 42 H 1.08004 * 119.95564 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.03827 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.07282 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 6 4.1481 -2.5881 0.0010 7 6 4.3783 -3.2391 1.2005 8 6 4.8399 -4.5433 1.2097 9 6 5.0686 -5.2059 0.0214 10 6 4.8445 -4.5531 -1.1924 11 6 5.0934 -5.2537 -2.4686 12 8 5.3957 -4.6199 -3.4612 13 7 4.9854 -6.5955 -2.5328 14 6 5.2621 -7.2494 -3.7036 15 1 4.6134 -8.0423 -4.0456 16 6 6.3776 -6.8927 -4.4519 17 7 7.4052 -6.3202 -3.8670 18 14 6.4156 -7.2270 -6.2894 19 1 5.1448 -7.8758 -6.7008 20 1 6.5778 -5.9458 -7.0224 21 1 7.5547 -8.1258 -6.6054 22 6 4.5911 -7.3195 -1.4048 23 6 5.3073 -8.4445 -1.0138 24 6 4.9184 -9.1539 0.1051 25 6 3.8142 -8.7494 0.8333 26 6 3.0954 -7.6338 0.4435 27 6 3.4779 -6.9202 -0.6749 28 6 4.3779 -3.2365 -1.1943 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6958 -2.0073 0.0005 33 1 4.0089 -0.6533 0.8911 34 1 4.0096 -0.6536 -0.8888 35 1 4.1976 -2.7263 2.1337 36 1 5.0170 -5.0455 2.1493 37 1 5.4243 -6.2256 0.0300 38 1 8.1534 -6.0066 -4.3989 39 1 6.1695 -8.7610 -1.5819 40 1 5.4768 -10.0260 0.4120 41 1 3.5125 -9.3059 1.7083 42 1 2.2335 -7.3211 1.0143 43 1 2.9159 -6.0495 -0.9789 44 1 4.1988 -2.7270 -2.1295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519791176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:20:55 Heat of formation + Delta-G solvation = 3.928792 kcal Electronic energy + Delta-G solvation = -28964.123562 eV Core-core repulsion = 25040.118972 eV Total energy + Delta-G solvation = -3924.004590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.45557 -39.65427 -38.32871 -37.50835 -34.91833 -34.44500 -32.48821 -31.60051 -30.67897 -30.30171 -29.60517 -28.73562 -25.81133 -25.33077 -23.21482 -21.93985 -21.77583 -21.26869 -20.70456 -19.61365 -17.48262 -17.45350 -16.66585 -16.13528 -15.95239 -15.71467 -15.57502 -15.19079 -14.87720 -14.39044 -14.23269 -13.84941 -13.74616 -13.55673 -13.31479 -12.96708 -12.91759 -12.84852 -12.82570 -12.71519 -12.33330 -12.10276 -11.76609 -11.62472 -11.30464 -11.05445 -10.94137 -10.88682 -10.73132 -10.51761 -10.34245 -10.07834 -9.22342 -9.17906 -8.84273 -8.70082 -8.52532 -8.48398 -8.07681 -7.13702 -6.43189 -4.15121 1.25631 1.51719 1.91144 2.01451 2.53751 3.16947 3.22008 3.30587 3.32332 3.72706 4.07735 4.29517 4.49038 4.56204 4.66602 4.79919 5.01879 5.07700 5.12272 5.16804 5.20359 5.37116 5.40571 5.43973 5.49893 5.57647 5.64981 5.68746 5.75826 5.84595 5.97398 6.11739 6.14734 6.25436 6.29241 6.41623 6.57498 6.67133 6.69183 6.79661 6.94468 7.05980 7.15798 7.17602 7.37176 7.41032 7.50269 8.03707 8.10962 8.66596 8.81164 9.29009 9.83369 10.63374 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010682 B = 0.003894 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.712297 B = 7189.473307 C = 8869.611861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.508 3.492 3 O -0.552 6.552 4 N -0.725 5.725 5 C 0.165 3.835 6 C -0.130 4.130 7 C -0.093 4.093 8 C -0.133 4.133 9 C -0.070 4.070 10 C -0.109 4.109 11 C 0.523 3.477 12 O -0.516 6.516 13 N -0.395 5.395 14 C -0.357 4.357 15 H 0.089 0.911 16 C 0.081 3.919 17 N -0.823 5.823 18 Si 0.912 3.088 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.283 1.283 22 C 0.169 3.831 23 C -0.138 4.138 24 C -0.104 4.104 25 C -0.166 4.166 26 C -0.103 4.103 27 C -0.155 4.155 28 C -0.057 4.057 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.403 0.597 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.139 0.861 38 H 0.271 0.729 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.052 1.619 11.998 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.295 3.705 3 O -0.430 6.430 4 N -0.377 5.377 5 C 0.043 3.957 6 C -0.131 4.131 7 C -0.112 4.112 8 C -0.151 4.151 9 C -0.089 4.089 10 C -0.112 4.112 11 C 0.314 3.686 12 O -0.393 6.393 13 N -0.107 5.107 14 C -0.482 4.482 15 H 0.107 0.893 16 C -0.132 4.132 17 N -0.455 5.455 18 Si 0.738 3.262 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.209 1.209 22 C 0.073 3.927 23 C -0.159 4.159 24 C -0.123 4.123 25 C -0.185 4.185 26 C -0.122 4.122 27 C -0.176 4.176 28 C -0.076 4.076 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.238 0.762 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.156 0.844 38 H 0.081 0.919 39 H 0.147 0.853 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.185 2.805 11.348 14.866 hybrid contribution 0.038 -0.666 -0.812 1.051 sum -9.147 2.139 10.535 14.115 Atomic orbital electron populations 1.21919 0.91748 1.05398 1.04322 1.20830 0.90617 0.83451 0.75612 1.90721 1.70938 1.31479 1.49820 1.46206 1.07312 1.08868 1.75338 1.20144 0.79504 0.93146 1.02949 1.19600 1.04537 0.95476 0.93445 1.21054 0.98491 0.94778 0.96898 1.20993 1.01503 0.94671 0.97935 1.22021 0.95346 0.99946 0.91564 1.20370 1.01402 0.94878 0.94549 1.18073 0.81230 0.82200 0.87138 1.90624 1.46804 1.65083 1.36758 1.41037 1.58486 1.03593 1.07625 1.19145 1.09396 1.22326 0.97329 0.89300 1.25272 0.92757 0.94991 1.00138 1.69906 1.04816 1.34067 1.36674 0.86157 0.78220 0.78208 0.83628 1.19129 1.20203 1.20901 1.18352 0.92918 0.93796 0.87595 1.21179 1.00386 0.97123 0.97179 1.20941 0.96903 0.99172 0.95264 1.20849 0.97878 0.98630 1.01117 1.20737 0.99413 0.95498 0.96550 1.21081 0.96763 1.01631 0.98140 1.21064 0.95915 0.93012 0.97657 0.89443 0.89080 0.89317 0.76246 0.90755 0.90627 0.86333 0.85978 0.84353 0.91864 0.85287 0.86769 0.87149 0.86927 0.86737 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.32 36.01 0.37 -0.87 16 2 C 0.51 5.89 7.94 -10.98 -0.09 5.81 16 3 O -0.55 -8.90 17.09 5.56 0.10 -8.81 16 4 N -0.73 -7.74 5.55 -61.47 -0.34 -8.08 16 5 C 0.17 2.06 5.79 -5.19 -0.03 2.03 16 6 C -0.13 -1.78 5.24 -104.68 -0.55 -2.33 16 7 C -0.09 -1.17 9.69 -39.48 -0.38 -1.55 16 8 C -0.13 -1.84 10.03 -39.64 -0.40 -2.24 16 9 C -0.07 -1.22 6.46 -39.16 -0.25 -1.47 16 10 C -0.11 -2.15 4.44 -104.97 -0.47 -2.62 16 11 C 0.52 12.99 6.59 -12.40 -0.08 12.91 16 12 O -0.52 -14.67 14.74 5.29 0.08 -14.59 16 13 N -0.40 -9.66 2.66 -60.02 -0.16 -9.82 16 14 C -0.36 -9.44 8.52 -15.00 -0.13 -9.57 16 15 H 0.09 2.30 7.95 -52.48 -0.42 1.88 16 16 C 0.08 2.19 4.16 -17.48 -0.07 2.11 16 17 N -0.82 -23.25 12.25 55.50 0.68 -22.57 16 18 Si 0.91 21.04 29.62 -169.99 -5.04 16.00 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.17 3.45 3.46 -83.72 -0.29 3.16 16 23 C -0.14 -2.63 9.01 -39.37 -0.35 -2.98 16 24 C -0.10 -1.59 10.04 -39.61 -0.40 -1.99 16 25 C -0.17 -2.28 10.04 -39.52 -0.40 -2.68 16 26 C -0.10 -1.47 9.99 -39.61 -0.40 -1.87 16 27 C -0.16 -2.67 6.02 -39.36 -0.24 -2.91 16 28 C -0.06 -0.98 9.24 -39.16 -0.36 -1.34 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.66 8.12 -51.93 -0.42 0.23 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.40 3.49 8.46 -40.82 -0.35 3.14 16 33 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.14 2.59 4.72 -52.49 -0.25 2.34 16 38 H 0.27 7.33 8.32 -40.82 -0.34 6.99 16 39 H 0.13 2.68 7.88 -52.49 -0.41 2.27 16 40 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 41 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 43 H 0.11 1.98 6.98 -52.49 -0.37 1.62 16 44 H 0.13 2.29 7.90 -52.49 -0.41 1.88 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -33.14 373.29 -9.13 -42.27 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.56 Total: 8.38 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -4.51 Total: -8.41 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.18 Total: -40.47 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.17 Total: -23.39 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.04 Total: 16.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.14 -9.13 -42.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519791176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.195 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds