Wall clock time and date at job start Sat Apr 11 2020 05:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47146 * 240.00314 * 3 2 1 5 5 H 1.48498 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47160 * 119.99989 * 3 2 1 7 7 C 1.38820 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99510 * 164.52033 * 7 2 1 9 9 N 1.36936 * 120.00123 * 344.52273 * 7 2 1 10 10 C 1.47003 * 121.37507 * 335.96662 * 9 7 2 11 11 C 1.50318 * 109.16607 * 222.97291 * 10 9 7 12 12 C 1.29455 * 123.65476 * 349.01875 * 11 10 9 13 13 C 1.50698 * 117.69764 * 180.86169 * 12 11 10 14 14 N 1.46494 * 109.47331 * 95.00486 * 13 12 11 15 15 C 1.34767 * 120.00200 * 180.02562 * 14 13 12 16 16 O 1.21491 * 120.00272 * 359.97438 * 15 14 13 17 17 C 1.48363 * 120.00209 * 179.97438 * 15 14 13 18 18 C 1.40163 * 119.20333 * 179.97438 * 17 15 14 19 19 C 1.36631 * 119.70656 * 179.67166 * 18 17 15 20 20 C 1.40596 * 118.20712 * 0.62984 * 19 18 17 21 21 C 1.40735 * 121.38988 * 179.67781 * 20 19 18 22 22 C 1.36581 * 118.13771 * 179.72238 * 21 20 19 23 23 C 1.39433 * 119.84885 * 0.02562 * 22 21 20 24 24 N 1.31020 * 121.83463 * 0.02562 * 23 22 21 25 25 C 1.33858 * 121.42383 * 359.96376 * 24 23 22 26 26 N 1.31886 * 119.20060 * 0.02562 * 17 15 14 27 27 C 1.49977 * 124.60495 * 1.14375 * 12 11 10 28 28 C 1.47338 * 121.37253 * 155.99144 * 9 7 2 29 29 H 0.96992 * 120.00020 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.52175 * 103.06552 * 10 9 7 31 31 H 1.09003 * 109.52409 * 342.87712 * 10 9 7 32 32 H 1.08004 * 118.17769 * 169.00194 * 11 10 9 33 33 H 1.08998 * 109.47104 * 335.00120 * 13 12 11 34 34 H 1.09005 * 109.46977 * 215.00179 * 13 12 11 35 35 H 0.97006 * 119.99890 * 359.97438 * 14 13 12 36 36 H 1.08001 * 120.15144 * 0.02562 * 18 17 15 37 37 H 1.08001 * 120.89854 * 180.27979 * 19 18 17 38 38 H 1.08008 * 120.93225 * 359.70339 * 21 20 19 39 39 H 1.07998 * 120.07702 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.08250 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.31201 * 101.01044 * 27 12 11 42 42 H 1.08999 * 109.30901 * 220.43257 * 27 12 11 43 43 H 1.09000 * 109.77596 * 237.78623 * 28 9 7 44 44 H 1.08998 * 109.77801 * 358.59724 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0609 -1.2190 -0.2502 9 7 1.3628 -2.3668 0.3154 10 6 0.1444 -2.3662 1.1378 11 6 0.2246 -3.4841 2.1395 12 6 1.1202 -4.4181 2.1021 13 6 1.0637 -5.4858 3.1641 14 7 0.3200 -6.6411 2.6560 15 6 0.1405 -7.7239 3.4379 16 8 0.5959 -7.7422 4.5641 17 6 -0.6131 -8.8938 2.9235 18 6 -0.7894 -10.0114 3.7509 19 6 -1.4875 -11.0916 3.2900 20 6 -1.9974 -11.0440 1.9807 21 6 -2.7204 -12.1216 1.4359 22 6 -3.1903 -12.0020 0.1591 23 6 -2.9467 -10.8348 -0.5636 24 7 -2.2723 -9.8341 -0.0534 25 6 -1.7835 -9.8846 1.1918 26 7 -1.1002 -8.8573 1.6984 27 6 2.2138 -4.5090 1.0797 28 6 1.8590 -3.6721 -0.1545 29 1 -0.4850 0.8400 0.0004 30 1 -0.7265 -2.5115 0.4988 31 1 0.0585 -1.4138 1.6611 32 1 -0.5055 -3.5095 2.9350 33 1 0.5634 -5.0921 4.0488 34 1 2.0766 -5.7921 3.4256 35 1 -0.0439 -6.6264 1.7569 36 1 -0.3801 -10.0163 4.7503 37 1 -1.6387 -11.9610 3.9127 38 1 -2.8983 -13.0182 2.0113 39 1 -3.7494 -12.8097 -0.2897 40 1 -3.3237 -10.7536 -1.5724 41 1 3.1441 -4.1421 1.5134 42 1 2.3436 -5.5496 0.7824 43 1 1.0847 -4.1738 -0.7349 44 1 2.7476 -3.5293 -0.7694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000710774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:19:30 Heat of formation + Delta-G solvation = 81.632517 kcal Electronic energy + Delta-G solvation = -27521.421745 eV Core-core repulsion = 23633.079393 eV Total energy + Delta-G solvation = -3888.342352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.64936 -39.83781 -38.05900 -37.52112 -35.05852 -34.51008 -32.90403 -31.61150 -31.35823 -30.73090 -29.67136 -27.30278 -25.82102 -24.71654 -23.89467 -23.03169 -22.69766 -21.32382 -20.89241 -19.30668 -18.50342 -17.62577 -17.56922 -16.60477 -15.99192 -15.78919 -15.60345 -15.18474 -15.11279 -14.78918 -14.63406 -14.47630 -13.91643 -13.71089 -13.61058 -13.55180 -13.30457 -13.02102 -12.50374 -12.34195 -12.20540 -11.99864 -11.54612 -11.53027 -11.32536 -11.09705 -10.88281 -10.70826 -10.43055 -10.32210 -10.22405 -9.79529 -9.57894 -9.43106 -9.41560 -9.33643 -8.97577 -8.65111 -8.02953 -6.71427 -5.76819 -3.15509 -0.36116 0.07152 1.43215 2.01305 2.54556 2.96512 3.10398 3.41186 3.46617 3.47971 3.48559 3.75663 3.93394 4.15206 4.19854 4.32421 4.47107 4.52037 4.62457 4.85252 4.88592 5.15423 5.19829 5.36625 5.37614 5.42369 5.42492 5.60945 5.66005 5.73051 5.83161 5.93398 6.11597 6.12699 6.21127 6.38775 6.41607 6.55177 6.77609 6.87439 6.92705 7.20281 7.28761 7.35791 7.51097 7.71569 7.75623 7.85211 8.09949 8.40993 9.22331 9.85163 10.43633 11.33682 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018564 B = 0.002236 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.927292 B =12517.055461 C =13519.761113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.194 3.806 11 C -0.121 4.121 12 C -0.168 4.168 13 C 0.155 3.845 14 N -0.693 5.693 15 C 0.563 3.437 16 O -0.534 6.534 17 C 0.149 3.851 18 C -0.130 4.130 19 C -0.048 4.048 20 C -0.144 4.144 21 C -0.047 4.047 22 C -0.173 4.173 23 C 0.159 3.841 24 N -0.456 5.456 25 C 0.302 3.698 26 N -0.432 5.432 27 C -0.090 4.090 28 C 0.144 3.856 29 H 0.254 0.746 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.415 0.585 36 H 0.157 0.843 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.170 0.830 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.025 0.975 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.898 -27.743 4.518 28.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.069 3.931 11 C -0.142 4.142 12 C -0.168 4.168 13 C 0.033 3.967 14 N -0.343 5.343 15 C 0.346 3.654 16 O -0.411 6.411 17 C -0.008 4.008 18 C -0.150 4.150 19 C -0.074 4.074 20 C -0.149 4.149 21 C -0.074 4.074 22 C -0.193 4.193 23 C -0.018 4.018 24 N -0.164 5.164 25 C 0.064 3.936 26 N -0.145 5.145 27 C -0.129 4.129 28 C 0.017 3.983 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.252 0.748 36 H 0.175 0.825 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.187 0.813 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.333 -25.977 4.305 27.083 hybrid contribution -0.169 -0.676 0.591 0.914 sum -6.503 -26.653 4.897 27.869 Atomic orbital electron populations 1.70001 1.05159 1.25606 1.54766 1.24994 0.95398 0.98286 1.01289 0.86316 0.78805 0.83277 0.78077 1.20946 1.21655 1.21088 1.19144 0.92203 0.84358 1.41777 0.91403 1.44121 1.29198 1.01228 1.57289 1.19763 0.88867 0.94708 0.89772 1.23297 0.95593 0.96701 0.98606 1.20464 1.00215 0.97066 0.99080 1.20585 0.96168 0.84203 0.95791 1.46136 1.54339 1.15230 1.18637 1.17876 0.80140 0.82200 0.85179 1.90785 1.50289 1.81357 1.18619 1.21546 0.95021 0.94877 0.89389 1.21857 0.98526 0.92533 1.02100 1.21468 0.93833 0.98627 0.93510 1.19745 1.01545 0.97000 0.96611 1.21499 0.93329 0.97168 0.95383 1.22088 1.01672 1.00014 0.95519 1.23203 0.91068 0.87583 0.99957 1.67681 1.09032 1.29158 1.10540 1.19215 0.95181 0.88535 0.90686 1.67409 1.07537 1.27423 1.12120 1.20785 0.96463 0.99127 0.96505 1.20994 0.97396 0.87135 0.92770 0.93563 0.94003 0.88862 0.88757 0.91217 0.91136 0.74810 0.82523 0.83221 0.83780 0.83697 0.81287 0.91708 0.92856 0.95695 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.47 11.08 55.49 0.61 -25.85 16 2 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 3 Si 0.91 21.93 29.58 -169.99 -5.03 16.90 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.79 9.71 -15.06 -0.15 -6.94 16 8 H 0.07 1.84 7.88 -52.49 -0.41 1.42 16 9 N -0.60 -15.11 3.01 -173.57 -0.52 -15.64 16 10 C 0.19 4.67 5.23 -5.10 -0.03 4.65 16 11 C -0.12 -2.38 9.47 -35.78 -0.34 -2.71 16 12 C -0.17 -2.99 5.22 -100.99 -0.53 -3.51 16 13 C 0.15 2.41 5.66 -5.20 -0.03 2.38 16 14 N -0.69 -10.28 5.53 -62.27 -0.34 -10.62 16 15 C 0.56 8.28 7.81 -12.10 -0.09 8.19 16 16 O -0.53 -8.84 16.28 5.37 0.09 -8.76 16 17 C 0.15 1.93 6.75 -82.95 -0.56 1.37 16 18 C -0.13 -1.27 9.54 -39.44 -0.38 -1.65 16 19 C -0.05 -0.36 9.89 -39.27 -0.39 -0.74 16 20 C -0.14 -1.30 5.75 -106.68 -0.61 -1.92 16 21 C -0.05 -0.27 9.90 -39.24 -0.39 -0.66 16 22 C -0.17 -0.88 10.04 -39.73 -0.40 -1.28 16 23 C 0.16 1.20 11.14 -17.45 -0.19 1.00 16 24 N -0.46 -5.54 10.43 -12.59 -0.13 -5.67 16 25 C 0.30 3.80 7.61 -157.91 -1.20 2.60 16 26 N -0.43 -6.06 9.56 -9.19 -0.09 -6.14 16 27 C -0.09 -1.62 5.95 -28.08 -0.17 -1.79 16 28 C 0.14 3.05 6.59 -3.44 -0.02 3.03 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 2.49 6.41 -51.93 -0.33 2.15 16 32 H 0.09 1.66 7.73 -52.48 -0.41 1.26 16 33 H 0.07 1.08 7.78 -51.93 -0.40 0.68 16 34 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 35 H 0.42 6.21 7.77 -40.82 -0.32 5.89 16 36 H 0.16 1.34 7.60 -52.49 -0.40 0.94 16 37 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.14 0.34 8.06 -52.48 -0.42 -0.09 16 39 H 0.15 0.24 8.06 -52.49 -0.42 -0.18 16 40 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -34.10 372.40 -10.99 -45.09 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.62 Total: 3.22 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -5.56 Total: 1.87 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -0.47 Total: -63.93 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.10 -10.99 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000710774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.720 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds